RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 PRPF4BQ13523 1007 aaKnown RBP16.91■□□□□ 0.3
CUX1-214ENST00000550008 KRBA2Q6ZNG9 492 aa16.91■□□□□ 0.3
CUX1-214ENST00000550008 ERMNQ8TAM6 284 aa16.91■□□□□ 0.3
CUX1-214ENST00000550008 TRERF1Q96PN7 1200 aa16.91■□□□□ 0.3
CUX1-214ENST00000550008 MRPL12P52815 198 aaKnown RBP16.91■□□□□ 0.3
CUX1-214ENST00000550008 MECOMQ03112 1051 aa16.91■□□□□ 0.3
CUX1-214ENST00000550008 CSGALNACT2Q8N6G5 542 aa16.91■□□□□ 0.3
CUX1-214ENST00000550008 DESI2Q9BSY9 194 aa16.91■□□□□ 0.3
CUX1-214ENST00000550008 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.91■□□□□ 0.3
CUX1-214ENST00000550008 CPVLQ9H3G5 476 aa16.91■□□□□ 0.3
CUX1-214ENST00000550008 HDAC9Q9UKV0 1011 aa16.91■□□□□ 0.3
CUX1-214ENST00000550008 ZNF609O15014 1411 aa16.9■□□□□ 0.3
CUX1-214ENST00000550008 TRAF5O00463 557 aa16.9■□□□□ 0.3
CUX1-214ENST00000550008 RFX5P48382 616 aaPredicted RBP16.9■□□□□ 0.3
CUX1-214ENST00000550008 MAPK8IP2Q13387 824 aaPredicted RBP16.9■□□□□ 0.3
CUX1-214ENST00000550008 CCDC42Q96M95 316 aa16.9■□□□□ 0.3
CUX1-214ENST00000550008 CSRNP2Q9H175 543 aa16.9■□□□□ 0.3
CUX1-214ENST00000550008 LRWD1Q9UFC0 647 aa16.9■□□□□ 0.3
CUX1-214ENST00000550008 ZHX1Q9UKY1 873 aaPredicted RBP16.9■□□□□ 0.3
CUX1-214ENST00000550008 LEKR1Q6ZMV7 388 aa16.9■□□□□ 0.3
CUX1-214ENST00000550008 BLIDQ8IZY5 108 aa16.9■□□□□ 0.3
CUX1-214ENST00000550008 TXLNBQ8N3L3 684 aa16.9■□□□□ 0.3
CUX1-214ENST00000550008 QTRT2Q9H974 415 aaKnown RBP16.9■□□□□ 0.3
CUX1-214ENST00000550008 RIPOR2Q9Y4F9 1068 aa16.9■□□□□ 0.3
CUX1-214ENST00000550008 SERPINB2P05120 415 aa16.9■□□□□ 0.3
CUX1-214ENST00000550008 SV2BQ7L1I2 683 aa16.9■□□□□ 0.3
CUX1-214ENST00000550008 REXO1Q8N1G1 1221 aaKnown RBP16.9■□□□□ 0.3
CUX1-214ENST00000550008 FNBP4Q8N3X1 1017 aaPredicted RBP16.9■□□□□ 0.3
CUX1-214ENST00000550008 SNX29Q8TEQ0 813 aa16.9■□□□□ 0.3
CUX1-214ENST00000550008 PCDHB6Q9Y5E3 794 aa16.9■□□□□ 0.3
CUX1-214ENST00000550008 NMT2O60551 498 aa16.89■□□□□ 0.3
CUX1-214ENST00000550008 TBC1D9BQ66K14 1250 aa16.89■□□□□ 0.3
CUX1-214ENST00000550008 USP17L3A6NCW0 530 aa16.89■□□□□ 0.29
CUX1-214ENST00000550008 USP17L4A6NCW7 530 aa16.89■□□□□ 0.29
CUX1-214ENST00000550008 RHOXF2BP0C7M4 288 aa16.89■□□□□ 0.29
CUX1-214ENST00000550008 CYLC1P35663 651 aaPredicted RBP16.89■□□□□ 0.29
CUX1-214ENST00000550008 USP17L1Q7RTZ2 530 aa16.89■□□□□ 0.29
CUX1-214ENST00000550008 SYMPKQ92797 1274 aaKnown RBP16.89■□□□□ 0.29
CUX1-214ENST00000550008 RHOXF2Q9BQY4 288 aa16.89■□□□□ 0.29
CUX1-214ENST00000550008 MACROD2A1Z1Q3 448 aa16.89■□□□□ 0.29
CUX1-214ENST00000550008 PLEKHA8P1O95397 391 aa16.89■□□□□ 0.29
CUX1-214ENST00000550008 PAK1Q13153 545 aa16.89■□□□□ 0.29
CUX1-214ENST00000550008 PPP2R5BQ15173 497 aa16.89■□□□□ 0.29
CUX1-214ENST00000550008 VPS36Q86VN1 386 aa16.89■□□□□ 0.29
CUX1-214ENST00000550008 CACTINQ8WUQ7 758 aaKnown RBP16.89■□□□□ 0.29
CUX1-214ENST00000550008 MINPP1Q9UNW1 487 aa16.89■□□□□ 0.29
CUX1-214ENST00000550008 KRT9P35527 623 aa16.89■□□□□ 0.29
CUX1-214ENST00000550008 TECP42680 631 aa16.89■□□□□ 0.29
CUX1-214ENST00000550008 ARID5BQ14865 1188 aa16.89■□□□□ 0.29
CUX1-214ENST00000550008 IQCEQ6IPM2 695 aa16.89■□□□□ 0.29
CUX1-214ENST00000550008 CDC27P30260 824 aa16.88■□□□□ 0.29
CUX1-214ENST00000550008 FERMT2Q96AC1 680 aa16.88■□□□□ 0.29
CUX1-214ENST00000550008 POLR3EQ9NVU0 708 aa16.88■□□□□ 0.29
CUX1-214ENST00000550008 MYOM1P52179 1685 aa16.88■□□□□ 0.29
CUX1-214ENST00000550008 PLCD1P51178 756 aa16.88■□□□□ 0.29
CUX1-214ENST00000550008 NELFCDQ8IXH7 590 aa16.88■□□□□ 0.29
CUX1-214ENST00000550008 CPXCR1Q8N123 301 aa16.88■□□□□ 0.29
CUX1-214ENST00000550008 NOC4LQ9BVI4 516 aaKnown RBP16.88■□□□□ 0.29
CUX1-214ENST00000550008 H0YIN7 160 aa16.88■□□□□ 0.29
CUX1-214ENST00000550008 IFNAR1P17181 557 aa16.88■□□□□ 0.29
CUX1-214ENST00000550008 MAEAQ7L5Y9 396 aa16.88■□□□□ 0.29
CUX1-214ENST00000550008 SLC44A5Q8NCS7 719 aa16.88■□□□□ 0.29
CUX1-214ENST00000550008 U2AF2P26368 475 aaKnown RBP eCLIP16.87■□□□□ 0.291e-7■■■■■ 27.9
CUX1-214ENST00000550008 HLTFQ14527 1009 aaKnown RBP eCLIP16.87■□□□□ 0.29
CUX1-214ENST00000550008 CABP7Q86V35 215 aa16.87■□□□□ 0.29
CUX1-214ENST00000550008 LARGE2Q8N3Y3 721 aa16.87■□□□□ 0.29
CUX1-214ENST00000550008 NELFBQ8WX92 580 aa16.87■□□□□ 0.29
CUX1-214ENST00000550008 CARD6Q9BX69 1037 aa16.87■□□□□ 0.29
CUX1-214ENST00000550008 DBNDD1Q9H9R9 158 aa16.87■□□□□ 0.29
CUX1-214ENST00000550008 ATP8A2Q9NTI2 1148 aa16.87■□□□□ 0.29
CUX1-214ENST00000550008 PXDNQ92626 1479 aa16.87■□□□□ 0.29
CUX1-214ENST00000550008 A0A1W2PQ27 194 aa16.87■□□□□ 0.29
CUX1-214ENST00000550008 A0A1W2PQ64 194 aa16.87■□□□□ 0.29
CUX1-214ENST00000550008 A0A1W2PQD8 194 aa16.87■□□□□ 0.29
CUX1-214ENST00000550008 ZNF500O60304 480 aaPredicted RBP16.87■□□□□ 0.29
CUX1-214ENST00000550008 FMNL1O95466 1100 aaPredicted RBP16.87■□□□□ 0.29
CUX1-214ENST00000550008 ADCY7P51828 1080 aa16.87■□□□□ 0.29
CUX1-214ENST00000550008 ATP1A3P13637 1013 aa16.87■□□□□ 0.29
CUX1-214ENST00000550008 CASP1P29466 404 aa16.87■□□□□ 0.29
CUX1-214ENST00000550008 TRIM28Q13263 835 aaKnown RBP16.87■□□□□ 0.29
CUX1-214ENST00000550008 DCAF17Q5H9S7 520 aaPredicted RBP16.87■□□□□ 0.29
CUX1-214ENST00000550008 LRRC27Q9C0I9 530 aa16.87■□□□□ 0.29
CUX1-214ENST00000550008 ELF2Q15723 593 aa16.86■□□□□ 0.29
CUX1-214ENST00000550008 USP17L2Q6R6M4 530 aa16.86■□□□□ 0.29
CUX1-214ENST00000550008 MB21D2Q8IYB1 491 aaPredicted RBP16.86■□□□□ 0.29
CUX1-214ENST00000550008 TBC1D22AQ8WUA7 517 aa16.86■□□□□ 0.29
CUX1-214ENST00000550008 EPSTI1Q96J88 318 aa16.86■□□□□ 0.29
CUX1-214ENST00000550008 CFBP00751 764 aa16.86■□□□□ 0.29
CUX1-214ENST00000550008 JDP2Q8WYK2 163 aa16.86■□□□□ 0.29
CUX1-214ENST00000550008 ALS2CR12Q96Q35 445 aa16.86■□□□□ 0.29
CUX1-214ENST00000550008 SRRTQ9BXP5 876 aaKnown RBP16.86■□□□□ 0.29
CUX1-214ENST00000550008 GOLPH3LQ9H4A5 285 aa16.86■□□□□ 0.29
CUX1-214ENST00000550008 EHMT1Q9H9B1 1298 aa16.86■□□□□ 0.29
CUX1-214ENST00000550008 GJA3Q9Y6H8 435 aa16.86■□□□□ 0.29
CUX1-214ENST00000550008 CCDC66A2RUB6 948 aa16.86■□□□□ 0.29
CUX1-214ENST00000550008 CTAGE15A4D2H0 777 aa16.86■□□□□ 0.29
CUX1-214ENST00000550008 CTAGE9A4FU28 777 aa16.86■□□□□ 0.29
CUX1-214ENST00000550008 CTAGE8P0CG41 777 aa16.86■□□□□ 0.29
CUX1-214ENST00000550008 CALCRLQ16602 461 aa16.86■□□□□ 0.29
CUX1-214ENST00000550008 CTAGE6Q86UF2 777 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms