RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	HOOK2	Q96ED9	719 aa		11.21	□□□□□ -0.61
YBX3-215	ENST00000544504	CLMN	Q96JQ2	1002 aa		11.21	□□□□□ -0.61
YBX3-215	ENST00000544504	TRIM34	Q9BYJ4	488 aa		11.21	□□□□□ -0.61
YBX3-215	ENST00000544504	DEFB129	Q9H1M3	183 aa		11.21	□□□□□ -0.61
YBX3-215	ENST00000544504	TOMM22	Q9NS69	142 aa		11.21	□□□□□ -0.61
YBX3-215	ENST00000544504	PDRG1	Q9NUG6	133 aa		11.21	□□□□□ -0.61
YBX3-215	ENST00000544504	PI4KB	Q9UBF8	816 aa		11.21	□□□□□ -0.61
YBX3-215	ENST00000544504	PTCH2	Q9Y6C5	1203 aa		11.21	□□□□□ -0.61
YBX3-215	ENST00000544504	CUL9	Q8IWT3	2517 aa		11.21	□□□□□ -0.61
YBX3-215	ENST00000544504	CEP290	O15078	2479 aa		11.21	□□□□□ -0.61
YBX3-215	ENST00000544504	MYH1	P12882	1939 aa		11.2	□□□□□ -0.62
YBX3-215	ENST00000544504	BAZ2A	Q9UIF9	1905 aa	Known RBP	11.2	□□□□□ -0.62
YBX3-215	ENST00000544504	ERICH2	A1L162	156 aa		11.2	□□□□□ -0.62
YBX3-215	ENST00000544504	TESPA1	A2RU30	521 aa	Predicted RBP	11.2	□□□□□ -0.62
YBX3-215	ENST00000544504	MNX1	P50219	401 aa	Predicted RBP	11.2	□□□□□ -0.62
YBX3-215	ENST00000544504	FGD1	P98174	961 aa		11.2	□□□□□ -0.62
YBX3-215	ENST00000544504	CAP1	Q01518	475 aa		11.2	□□□□□ -0.62
YBX3-215	ENST00000544504	CTDSPL2	Q05D32	466 aa		11.2	□□□□□ -0.62
YBX3-215	ENST00000544504	ADCK5	Q3MIX3	580 aa		11.2	□□□□□ -0.62
YBX3-215	ENST00000544504	PPP4R3B	Q5MIZ7	849 aa		11.2	□□□□□ -0.62
YBX3-215	ENST00000544504	DPF3	Q92784	378 aa		11.2	□□□□□ -0.62
YBX3-215	ENST00000544504	TMEM87B	Q96K49	555 aa		11.2	□□□□□ -0.62
YBX3-215	ENST00000544504	UPF3B	Q9BZI7	483 aa	Known RBP	11.2	□□□□□ -0.62
YBX3-215	ENST00000544504	MKNK2	Q9HBH9	465 aa		11.2	□□□□□ -0.62
YBX3-215	ENST00000544504	VEZT	Q9HBM0	779 aa		11.2	□□□□□ -0.62
YBX3-215	ENST00000544504	SAP30BP	Q9UHR5	308 aa	Known RBP	11.2	□□□□□ -0.62
YBX3-215	ENST00000544504	SERPINB13	Q9UIV8	391 aa		11.2	□□□□□ -0.62
YBX3-215	ENST00000544504	FZD1	Q9UP38	647 aa		11.2	□□□□□ -0.62
YBX3-215	ENST00000544504	PPP2R3B	Q9Y5P8	575 aa		11.2	□□□□□ -0.62
YBX3-215	ENST00000544504	DDX60L	Q5H9U9	1706 aa	Known RBP	11.2	□□□□□ -0.62
YBX3-215	ENST00000544504	CLRN2	A0PK11	232 aa		11.19	□□□□□ -0.62
YBX3-215	ENST00000544504	TCP10	Q12799	353 aa		11.19	□□□□□ -0.62
YBX3-215	ENST00000544504	NFIA	Q12857	509 aa		11.19	□□□□□ -0.62
YBX3-215	ENST00000544504	SUPT20HL1	Q3ZLR7	823 aa		11.19	□□□□□ -0.62
YBX3-215	ENST00000544504	STOX1	Q6ZVD7	989 aa		11.19	□□□□□ -0.62
YBX3-215	ENST00000544504	C16orf86	Q6ZW13	317 aa		11.19	□□□□□ -0.62
YBX3-215	ENST00000544504	IQCA1	Q86XH1	822 aa		11.19	□□□□□ -0.62
YBX3-215	ENST00000544504	ZNF444	Q8N0Y2	327 aa	Predicted RBP	11.19	□□□□□ -0.62
YBX3-215	ENST00000544504	TMTC2	Q8N394	836 aa		11.19	□□□□□ -0.62
YBX3-215	ENST00000544504	FBXL16	Q8N461	479 aa		11.19	□□□□□ -0.62
YBX3-215	ENST00000544504	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	11.19	□□□□□ -0.62
YBX3-215	ENST00000544504	ZSCAN31	Q96LW9	406 aa	Predicted RBP	11.19	□□□□□ -0.62
YBX3-215	ENST00000544504	CCDC17	Q96LX7	622 aa		11.19	□□□□□ -0.62
YBX3-215	ENST00000544504	PTPN18	Q99952	460 aa		11.19	□□□□□ -0.62
YBX3-215	ENST00000544504	NBPF3	Q9H094	633 aa		11.19	□□□□□ -0.62
YBX3-215	ENST00000544504	PRO3102	Q9H379	93 aa		11.19	□□□□□ -0.62
YBX3-215	ENST00000544504	DDX4	Q9NQI0	724 aa	Known RBP	11.19	□□□□□ -0.62
YBX3-215	ENST00000544504	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.19	□□□□□ -0.62
YBX3-215	ENST00000544504	FAM198A	Q9UFP1	575 aa		11.19	□□□□□ -0.62
YBX3-215	ENST00000544504	HERC5	Q9UII4	1024 aa	Known RBP	11.19	□□□□□ -0.62
YBX3-215	ENST00000544504	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	11.19	□□□□□ -0.62
YBX3-215	ENST00000544504	VCAN	P13611	3396 aa		11.18	□□□□□ -0.62
YBX3-215	ENST00000544504	CYP2D7	A0A087X1C5	515 aa		11.18	□□□□□ -0.62
YBX3-215	ENST00000544504		A0A1W2PPC1	479 aa		11.18	□□□□□ -0.62
YBX3-215	ENST00000544504		B4E1Z4	1266 aa		11.18	□□□□□ -0.62
YBX3-215	ENST00000544504	TCP10L2	B9ZVM9	353 aa		11.18	□□□□□ -0.62
YBX3-215	ENST00000544504	PRC1	O43663	620 aa		11.18	□□□□□ -0.62
YBX3-215	ENST00000544504	EXOSC10	Q01780	885 aa	Known RBP	11.18	□□□□□ -0.62
YBX3-215	ENST00000544504	RRP12	Q5JTH9	1297 aa	Known RBP	11.18	□□□□□ -0.62
YBX3-215	ENST00000544504	MB21D2	Q8IYB1	491 aa	Predicted RBP	11.18	□□□□□ -0.62
YBX3-215	ENST00000544504	TTC14	Q96N46	770 aa		11.18	□□□□□ -0.62
YBX3-215	ENST00000544504	UBAC1	Q9BSL1	405 aa		11.18	□□□□□ -0.62
YBX3-215	ENST00000544504	SH2B1	Q9NRF2	756 aa	Predicted RBP	11.18	□□□□□ -0.62
YBX3-215	ENST00000544504	LIMCH1	Q9UPQ0	1083 aa		11.18	□□□□□ -0.62
YBX3-215	ENST00000544504	PCDHAC2	Q9Y5I4	1007 aa		11.18	□□□□□ -0.62
YBX3-215	ENST00000544504	NEDD4	P46934	1319 aa		11.17	□□□□□ -0.62
YBX3-215	ENST00000544504	SSC5D	A1L4H1	1573 aa		11.17	□□□□□ -0.62
YBX3-215	ENST00000544504	TSPY2	A6NKD2	308 aa		11.17	□□□□□ -0.62
YBX3-215	ENST00000544504		K7ELQ4	463 aa	Predicted RBP	11.17	□□□□□ -0.62
YBX3-215	ENST00000544504	RANBP6	O60518	1105 aa	Known RBP	11.17	□□□□□ -0.62
YBX3-215	ENST00000544504	KDM4A	O75164	1064 aa		11.17	□□□□□ -0.62
YBX3-215	ENST00000544504	MYC	P01106	439 aa	Predicted RBP	11.17	□□□□□ -0.62
YBX3-215	ENST00000544504	CYP2D6	P10635	497 aa		11.17	□□□□□ -0.62
YBX3-215	ENST00000544504	GJA5	P36382	358 aa		11.17	□□□□□ -0.62
YBX3-215	ENST00000544504	IREB2	P48200	963 aa	Known RBP	11.17	□□□□□ -0.62
YBX3-215	ENST00000544504	CDK8	P49336	464 aa		11.17	□□□□□ -0.62
YBX3-215	ENST00000544504	PLCD1	P51178	756 aa		11.17	□□□□□ -0.62
YBX3-215	ENST00000544504	CACNB3	P54284	484 aa		11.17	□□□□□ -0.62
YBX3-215	ENST00000544504	METTL16	Q86W50	562 aa	Known RBP	11.17	□□□□□ -0.62
YBX3-215	ENST00000544504	ANKRD13A	Q8IZ07	590 aa		11.17	□□□□□ -0.62
YBX3-215	ENST00000544504	IPO9	Q96P70	1041 aa	Known RBP	11.17	□□□□□ -0.62
YBX3-215	ENST00000544504	ZFYVE28	Q9HCC9	887 aa		11.17	□□□□□ -0.62
YBX3-215	ENST00000544504	TAF6L	Q9Y6J9	622 aa		11.17	□□□□□ -0.62
YBX3-215	ENST00000544504	IFIT3	O14879	490 aa	Known RBP	11.16	□□□□□ -0.62
YBX3-215	ENST00000544504	TBC1D12	O60347	775 aa		11.16	□□□□□ -0.62
YBX3-215	ENST00000544504	TSPY3	P0CV98	308 aa		11.16	□□□□□ -0.62
YBX3-215	ENST00000544504	TSPY8	P0CW00	308 aa		11.16	□□□□□ -0.62
YBX3-215	ENST00000544504	LIFR	P42702	1097 aa		11.16	□□□□□ -0.62
YBX3-215	ENST00000544504	AK2	P54819	239 aa		11.16	□□□□□ -0.62
YBX3-215	ENST00000544504	GABPA	Q06546	454 aa		11.16	□□□□□ -0.62
YBX3-215	ENST00000544504	RASA3	Q14644	834 aa		11.16	□□□□□ -0.62
YBX3-215	ENST00000544504	DCAF15	Q66K64	600 aa		11.16	□□□□□ -0.62
YBX3-215	ENST00000544504	SYNE3	Q6ZMZ3	975 aa		11.16	□□□□□ -0.62
YBX3-215	ENST00000544504		Q6ZUG5	572 aa		11.16	□□□□□ -0.62
YBX3-215	ENST00000544504	NKX2-3	Q8TAU0	364 aa		11.16	□□□□□ -0.62
YBX3-215	ENST00000544504	SH3TC2	Q8TF17	1288 aa		11.16	□□□□□ -0.62
YBX3-215	ENST00000544504	HTATIP2	Q9BUP3	242 aa		11.16	□□□□□ -0.62
YBX3-215	ENST00000544504	AGXT2	Q9BYV1	514 aa		11.16	□□□□□ -0.62
YBX3-215	ENST00000544504	TCP11L1	Q9NUJ3	509 aa		11.16	□□□□□ -0.62
YBX3-215	ENST00000544504	ZSWIM5	Q9P217	1185 aa		11.16	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms