RNA–Protein interactions for RNA: ENST00000543162.1

DDB1-221, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 4

Gene DDB1, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-221ENST00000543162 CABP5Q9NP86 173 aa12.5□□□□□ -0.41
DDB1-221ENST00000543162 MTMR4Q9NYA4 1195 aa12.5□□□□□ -0.41
DDB1-221ENST00000543162 STX8Q9UNK0 236 aa12.5□□□□□ -0.41
DDB1-221ENST00000543162 CLEC11AQ9Y240 323 aa12.5□□□□□ -0.41
DDB1-221ENST00000543162 IGKV6D-41A0A0C4DH26 115 aa12.49□□□□□ -0.41
DDB1-221ENST00000543162 GH2P01242 217 aa12.49□□□□□ -0.41
DDB1-221ENST00000543162 RRP1BQ14684 758 aaKnown RBP12.49□□□□□ -0.41
DDB1-221ENST00000543162 USP48Q86UV5 1035 aa12.49□□□□□ -0.41
DDB1-221ENST00000543162 MICU3Q86XE3 530 aa12.49□□□□□ -0.41
DDB1-221ENST00000543162 ZNF654Q8IZM8 581 aa12.49□□□□□ -0.41
DDB1-221ENST00000543162 ZNF526Q8TF50 670 aaPredicted RBP12.49□□□□□ -0.41
DDB1-221ENST00000543162 GTF3C6Q969F1 213 aa12.49□□□□□ -0.41
DDB1-221ENST00000543162 CHMP4CQ96CF2 233 aa12.49□□□□□ -0.41
DDB1-221ENST00000543162 ZNF341Q9BYN7 854 aa12.49□□□□□ -0.41
DDB1-221ENST00000543162 KANSL2Q9H9L4 492 aa12.49□□□□□ -0.41
DDB1-221ENST00000543162 FOXD4L1Q9NU39 408 aa12.49□□□□□ -0.41
DDB1-221ENST00000543162 GOLGA8AA7E2F4 631 aa12.48□□□□□ -0.41
DDB1-221ENST00000543162 PHF20L1A8MW92 1017 aa12.48□□□□□ -0.41
DDB1-221ENST00000543162 DHX16O60231 1041 aaKnown RBP12.48□□□□□ -0.41
DDB1-221ENST00000543162 DDAH1O94760 285 aa12.48□□□□□ -0.41
DDB1-221ENST00000543162 TTLL1O95922 423 aa12.48□□□□□ -0.41
DDB1-221ENST00000543162 CALM1P0DP23 149 aa12.48□□□□□ -0.41
DDB1-221ENST00000543162 CALM2P0DP24 149 aa12.48□□□□□ -0.41
DDB1-221ENST00000543162 CALM3P0DP25 149 aa12.48□□□□□ -0.41
DDB1-221ENST00000543162 TOP1P11387 765 aaKnown RBP12.48□□□□□ -0.41
DDB1-221ENST00000543162 CAP2P40123 477 aa12.48□□□□□ -0.41
DDB1-221ENST00000543162 NOVP48745 357 aa12.48□□□□□ -0.41
DDB1-221ENST00000543162 METAP2P50579 478 aaKnown RBP eCLIP12.48□□□□□ -0.418e-7■■■■□ 21.2
DDB1-221ENST00000543162 RCAN1P53805 252 aa12.48□□□□□ -0.41
DDB1-221ENST00000543162 CCT2P78371 535 aaKnown RBP12.48□□□□□ -0.41
DDB1-221ENST00000543162 SCRN1Q12765 414 aa12.48□□□□□ -0.41
DDB1-221ENST00000543162 SEPT2Q15019 361 aa12.48□□□□□ -0.41
DDB1-221ENST00000543162 RAB3GAP1Q15042 981 aa12.48□□□□□ -0.41
DDB1-221ENST00000543162 SHROOM1Q2M3G4 852 aaPredicted RBP12.48□□□□□ -0.41
DDB1-221ENST00000543162 CDC37L1Q7L3B6 337 aa12.48□□□□□ -0.41
DDB1-221ENST00000543162 RAB11FIP4Q86YS3 637 aa12.48□□□□□ -0.41
DDB1-221ENST00000543162 PNMA1Q8ND90 353 aa12.48□□□□□ -0.41
DDB1-221ENST00000543162 INTS4Q96HW7 963 aaKnown RBP12.48□□□□□ -0.41
DDB1-221ENST00000543162 TMEM47Q9BQJ4 181 aa12.48□□□□□ -0.41
DDB1-221ENST00000543162 MYL10Q9BUA6 226 aa12.48□□□□□ -0.41
DDB1-221ENST00000543162 NMRK2Q9NPI5 230 aa12.48□□□□□ -0.41
DDB1-221ENST00000543162 HPS5Q9UPZ3 1129 aa12.48□□□□□ -0.41
DDB1-221ENST00000543162 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.48□□□□□ -0.41
DDB1-221ENST00000543162 GREB1LQ9C091 1923 aaPredicted RBP12.48□□□□□ -0.41
DDB1-221ENST00000543162 CTNND1O60716 968 aaKnown RBP12.47□□□□□ -0.41
DDB1-221ENST00000543162 RXRAP19793 462 aa12.47□□□□□ -0.41
DDB1-221ENST00000543162 NF2P35240 595 aa12.47□□□□□ -0.41
DDB1-221ENST00000543162 JAG1P78504 1218 aa12.47□□□□□ -0.41
DDB1-221ENST00000543162 ATP2B2Q01814 1243 aa12.47□□□□□ -0.41
DDB1-221ENST00000543162 ICA1Q05084 483 aa12.47□□□□□ -0.41
DDB1-221ENST00000543162 ST3GAL1Q11201 340 aa12.47□□□□□ -0.41
DDB1-221ENST00000543162 CLEC10AQ8IUN9 316 aa12.47□□□□□ -0.41
DDB1-221ENST00000543162 CCDC144CPQ8IYA2 1237 aa12.47□□□□□ -0.41
DDB1-221ENST00000543162 NUP133Q8WUM0 1156 aa12.47□□□□□ -0.41
DDB1-221ENST00000543162 CDCA5Q96FF9 252 aa12.47□□□□□ -0.41
DDB1-221ENST00000543162 GLIS2Q9BZE0 524 aaPredicted RBP12.47□□□□□ -0.41
DDB1-221ENST00000543162 NCOA5Q9HCD5 579 aaKnown RBP12.47□□□□□ -0.41
DDB1-221ENST00000543162 CLIP2Q9UDT6 1046 aa12.47□□□□□ -0.41
DDB1-221ENST00000543162 ZBTB21Q9ULJ3 1066 aa12.47□□□□□ -0.41
DDB1-221ENST00000543162 SSC5DA1L4H1 1573 aa12.47□□□□□ -0.41
DDB1-221ENST00000543162 CCDC196A0A1B0GTZ2 297 aa12.46□□□□□ -0.41
DDB1-221ENST00000543162 CPLX1O14810 134 aa12.46□□□□□ -0.41
DDB1-221ENST00000543162 ASNSP08243 561 aa12.46□□□□□ -0.41
DDB1-221ENST00000543162 POTEIP0CG38 1075 aa12.46□□□□□ -0.41
DDB1-221ENST00000543162 POTEJP0CG39 1038 aa12.46□□□□□ -0.41
DDB1-221ENST00000543162 EEF2P13639 858 aaKnown RBP12.46□□□□□ -0.41
DDB1-221ENST00000543162 GUCY1A2P33402 732 aa12.46□□□□□ -0.41
DDB1-221ENST00000543162 TROAPQ12815 778 aa12.46□□□□□ -0.41
DDB1-221ENST00000543162 RTN1Q16799 776 aa12.46□□□□□ -0.41
DDB1-221ENST00000543162 CPLX2Q6PUV4 134 aaKnown RBP12.46□□□□□ -0.41
DDB1-221ENST00000543162 DLK2Q6UY11 383 aa12.46□□□□□ -0.41
DDB1-221ENST00000543162 LDHDQ86WU2 507 aa12.46□□□□□ -0.41
DDB1-221ENST00000543162 FANCBQ8NB91 859 aa12.46□□□□□ -0.41
DDB1-221ENST00000543162 WRNIP1Q96S55 665 aa12.46□□□□□ -0.41
DDB1-221ENST00000543162 LLPHQ9BRT6 129 aaKnown RBP12.46□□□□□ -0.41
DDB1-221ENST00000543162 GINM1Q9NU53 330 aa12.46□□□□□ -0.41
DDB1-221ENST00000543162 NYAP2Q9P242 653 aa12.46□□□□□ -0.41
DDB1-221ENST00000543162 ZNF112Q9UJU3 913 aa12.46□□□□□ -0.41
DDB1-221ENST00000543162 SMC3Q9UQE7 1217 aa12.46□□□□□ -0.41
DDB1-221ENST00000543162 NID2Q14112 1375 aa12.45□□□□□ -0.42
DDB1-221ENST00000543162 PPP1R12BO60237 982 aaPredicted RBP12.45□□□□□ -0.42
DDB1-221ENST00000543162 INPP5BP32019 993 aa12.45□□□□□ -0.42
DDB1-221ENST00000543162 PRKG1Q13976 671 aa12.45□□□□□ -0.42
DDB1-221ENST00000543162 PPP2R5BQ15173 497 aa12.45□□□□□ -0.42
DDB1-221ENST00000543162 MAP1SQ66K74 1059 aaPredicted RBP12.45□□□□□ -0.42
DDB1-221ENST00000543162 LRRC47Q8N1G4 583 aaKnown RBP12.45□□□□□ -0.42
DDB1-221ENST00000543162 CTCFLQ8NI51 663 aaPredicted RBP12.45□□□□□ -0.42
DDB1-221ENST00000543162 ARHGEF10LQ9HCE6 1279 aa12.45□□□□□ -0.42
DDB1-221ENST00000543162 CWC22Q9HCG8 908 aaKnown RBP12.45□□□□□ -0.42
DDB1-221ENST00000543162 MTMR7Q9Y216 660 aa12.45□□□□□ -0.42
DDB1-221ENST00000543162 MYH4Q9Y623 1939 aa12.45□□□□□ -0.42
DDB1-221ENST00000543162 ATAD5Q96QE3 1844 aa12.44□□□□□ -0.42
DDB1-221ENST00000543162 USP2O75604 605 aaPredicted RBP12.44□□□□□ -0.42
DDB1-221ENST00000543162 CDKL5O76039 1030 aa12.44□□□□□ -0.42
DDB1-221ENST00000543162 CDC27P30260 824 aa12.44□□□□□ -0.42
DDB1-221ENST00000543162 KIF5BP33176 963 aa12.44□□□□□ -0.42
DDB1-221ENST00000543162 ADD1P35611 737 aaKnown RBP12.44□□□□□ -0.42
DDB1-221ENST00000543162 SIAH1Q8IUQ4 282 aa12.44□□□□□ -0.42
DDB1-221ENST00000543162 SCYL3Q8IZE3 742 aa12.44□□□□□ -0.42
DDB1-221ENST00000543162 MKL1Q969V6 931 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms