RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 XRCC5P13010 732 aaKnown RBP18.87■□□□□ 0.61
CLSTN3-213ENST00000541953 ZKSCAN1P17029 563 aaPredicted RBP18.87■□□□□ 0.61
CLSTN3-213ENST00000541953 MAPK4P31152 587 aa18.87■□□□□ 0.61
CLSTN3-213ENST00000541953 MAGEA10P43363 369 aaPredicted RBP18.87■□□□□ 0.61
CLSTN3-213ENST00000541953 USP5P45974 858 aa18.87■□□□□ 0.61
CLSTN3-213ENST00000541953 RLFQ13129 1914 aa18.87■□□□□ 0.61
CLSTN3-213ENST00000541953 RAB3GAP1Q15042 981 aa18.87■□□□□ 0.61
CLSTN3-213ENST00000541953 EYSQ5T1H1 3165 aa18.87■□□□□ 0.61
CLSTN3-213ENST00000541953 PANK1Q8TE04 598 aa18.87■□□□□ 0.61
CLSTN3-213ENST00000541953 GINM1Q9NU53 330 aa18.87■□□□□ 0.61
CLSTN3-213ENST00000541953 BTBD7Q9P203 1132 aa18.87■□□□□ 0.61
CLSTN3-213ENST00000541953 SERPINB13Q9UIV8 391 aa18.87■□□□□ 0.61
CLSTN3-213ENST00000541953 A0A0G2JMZ2 1700 aa18.86■□□□□ 0.61
CLSTN3-213ENST00000541953 VCAM1P19320 739 aa18.86■□□□□ 0.61
CLSTN3-213ENST00000541953 HNRNPUQ00839 825 aaKnown RBP eCLIP18.86■□□□□ 0.61
CLSTN3-213ENST00000541953 PLEKHH3Q7Z736 793 aa18.86■□□□□ 0.61
CLSTN3-213ENST00000541953 AACSQ86V21 672 aa18.86■□□□□ 0.61
CLSTN3-213ENST00000541953 EHD4Q9H223 541 aa18.86■□□□□ 0.61
CLSTN3-213ENST00000541953 IL1RAPL2Q9NP60 686 aa18.86■□□□□ 0.61
CLSTN3-213ENST00000541953 CAPN2P17655 700 aa18.85■□□□□ 0.61
CLSTN3-213ENST00000541953 PDE3AQ14432 1141 aa18.85■□□□□ 0.61
CLSTN3-213ENST00000541953 LRRC26Q2I0M4 334 aa18.85■□□□□ 0.61
CLSTN3-213ENST00000541953 SLFNL1Q499Z3 407 aa18.85■□□□□ 0.61
CLSTN3-213ENST00000541953 FEZ1Q99689 392 aa18.85■□□□□ 0.61
CLSTN3-213ENST00000541953 APBA2Q99767 749 aa18.85■□□□□ 0.61
CLSTN3-213ENST00000541953 SMIM22K7EJ46 135 aa18.84■□□□□ 0.61
CLSTN3-213ENST00000541953 BMP8BP34820 402 aa18.84■□□□□ 0.61
CLSTN3-213ENST00000541953 RGS2P41220 211 aa18.84■□□□□ 0.61
CLSTN3-213ENST00000541953 GABPAQ06546 454 aa18.84■□□□□ 0.61
CLSTN3-213ENST00000541953 CERKLQ49MI3 558 aaPredicted RBP18.84■□□□□ 0.61
CLSTN3-213ENST00000541953 KIAA1755Q5JYT7 1200 aa18.84■□□□□ 0.61
CLSTN3-213ENST00000541953 CATSPERGQ6ZRH7 1159 aa18.84■□□□□ 0.61
CLSTN3-213ENST00000541953 Q7L0L9 218 aa18.84■□□□□ 0.61
CLSTN3-213ENST00000541953 EDC3Q96F86 508 aaKnown RBP18.84■□□□□ 0.61
CLSTN3-213ENST00000541953 A0A1W2PRG0 241 aa18.83■□□□□ 0.6
CLSTN3-213ENST00000541953 SPDYE16A6NNV3 312 aaPredicted RBP18.83■□□□□ 0.6
CLSTN3-213ENST00000541953 USP17L15C9J2P7 530 aa18.83■□□□□ 0.6
CLSTN3-213ENST00000541953 USP17L13C9JLJ4 530 aa18.83■□□□□ 0.6
CLSTN3-213ENST00000541953 USP17L11C9JVI0 530 aa18.83■□□□□ 0.6
CLSTN3-213ENST00000541953 USP17L18D6R9N7 530 aa18.83■□□□□ 0.6
CLSTN3-213ENST00000541953 USP17L22D6RA61 530 aa18.83■□□□□ 0.6
CLSTN3-213ENST00000541953 USP17L17D6RBQ6 530 aa18.83■□□□□ 0.6
CLSTN3-213ENST00000541953 USP17L19D6RCP7 530 aa18.83■□□□□ 0.6
CLSTN3-213ENST00000541953 USP17L20D6RJB6 530 aa18.83■□□□□ 0.6
CLSTN3-213ENST00000541953 CHGBP05060 677 aa18.83■□□□□ 0.6
CLSTN3-213ENST00000541953 CYP2D6P10635 497 aa18.83■□□□□ 0.6
CLSTN3-213ENST00000541953 USP17L24Q0WX57 530 aa18.83■□□□□ 0.6
CLSTN3-213ENST00000541953 MAP2K5Q13163 448 aa18.83■□□□□ 0.6
CLSTN3-213ENST00000541953 SEPT2Q15019 361 aa18.83■□□□□ 0.6
CLSTN3-213ENST00000541953 ABCB5Q2M3G0 1257 aa18.83■□□□□ 0.6
CLSTN3-213ENST00000541953 CLEC10AQ8IUN9 316 aa18.83■□□□□ 0.6
CLSTN3-213ENST00000541953 SLC44A5Q8NCS7 719 aa18.83■□□□□ 0.6
CLSTN3-213ENST00000541953 NPLOC4Q8TAT6 608 aa18.83■□□□□ 0.6
CLSTN3-213ENST00000541953 KIAA1683Q9H0B3 1180 aa18.83■□□□□ 0.6
CLSTN3-213ENST00000541953 RABGAP1Q9Y3P9 1069 aa18.83■□□□□ 0.6
CLSTN3-213ENST00000541953 PARP14Q460N5 1801 aa18.82■□□□□ 0.6
CLSTN3-213ENST00000541953 PDE6AP16499 860 aa18.82■□□□□ 0.6
CLSTN3-213ENST00000541953 MAP3K12Q12852 859 aa18.82■□□□□ 0.6
CLSTN3-213ENST00000541953 TRPV1Q8NER1 839 aa18.82■□□□□ 0.6
CLSTN3-213ENST00000541953 SDR42E1Q8WUS8 393 aa18.82■□□□□ 0.6
CLSTN3-213ENST00000541953 RPAP3Q9H6T3 665 aaPredicted RBP18.82■□□□□ 0.6
CLSTN3-213ENST00000541953 BAZ2AQ9UIF9 1905 aaKnown RBP18.82■□□□□ 0.6
CLSTN3-213ENST00000541953 TCRBV5S4A2TA0A5A2 114 aa18.81■□□□□ 0.6
CLSTN3-213ENST00000541953 APBB1O00213 710 aa18.81■□□□□ 0.6
CLSTN3-213ENST00000541953 IGSF3O75054 1194 aa18.81■□□□□ 0.6
CLSTN3-213ENST00000541953 PTPREP23469 700 aa18.81■□□□□ 0.6
CLSTN3-213ENST00000541953 WDR78Q5VTH9 848 aa18.81■□□□□ 0.6
CLSTN3-213ENST00000541953 CCAR1Q8IX12 1150 aaKnown RBP18.81■□□□□ 0.6
CLSTN3-213ENST00000541953 LCORLQ8N3X6 602 aa18.81■□□□□ 0.6
CLSTN3-213ENST00000541953 RHPN1Q8TCX5 695 aa18.81■□□□□ 0.6
CLSTN3-213ENST00000541953 GTF3C2Q8WUA4 911 aaPredicted RBP18.81■□□□□ 0.6
CLSTN3-213ENST00000541953 ZNF236Q9UL36 1845 aa18.81■□□□□ 0.6
CLSTN3-213ENST00000541953 CDH23Q9H251 3354 aa18.81■□□□□ 0.6
CLSTN3-213ENST00000541953 MYH8P13535 1937 aa18.8■□□□□ 0.6
CLSTN3-213ENST00000541953 ZNF532Q9HCE3 1301 aa18.8■□□□□ 0.6
CLSTN3-213ENST00000541953 MAGEB6P1A0A0J9YX57 407 aa18.8■□□□□ 0.6
CLSTN3-213ENST00000541953 IGHA2P01877 340 aa18.8■□□□□ 0.6
CLSTN3-213ENST00000541953 GRB14Q14449 540 aa18.8■□□□□ 0.6
CLSTN3-213ENST00000541953 LBX2Q6XYB7 198 aa18.8■□□□□ 0.6
CLSTN3-213ENST00000541953 SIRT2Q8IXJ6 389 aa18.8■□□□□ 0.6
CLSTN3-213ENST00000541953 MIER1Q8N108 512 aa18.8■□□□□ 0.6
CLSTN3-213ENST00000541953 LTBP2Q14767 1821 aa18.79■□□□□ 0.6
CLSTN3-213ENST00000541953 CYP2C19P33261 490 aa18.79■□□□□ 0.6
CLSTN3-213ENST00000541953 USP14P54578 494 aa18.79■□□□□ 0.6
CLSTN3-213ENST00000541953 SLC9C2Q5TAH2 1124 aa18.79■□□□□ 0.6
CLSTN3-213ENST00000541953 TTC6Q86TZ1 520 aa18.79■□□□□ 0.6
CLSTN3-213ENST00000541953 TRMT44Q8IYL2 757 aaKnown RBP18.79■□□□□ 0.6
CLSTN3-213ENST00000541953 DYNLL2Q96FJ2 89 aa18.79■□□□□ 0.6
CLSTN3-213ENST00000541953 BCL11AQ9H165 835 aa18.79■□□□□ 0.6
CLSTN3-213ENST00000541953 SLC15A5A6NIM6 579 aa18.78■□□□□ 0.6
CLSTN3-213ENST00000541953 GOLIM4O00461 696 aa18.78■□□□□ 0.6
CLSTN3-213ENST00000541953 PRKAB2O43741 272 aa18.78■□□□□ 0.6
CLSTN3-213ENST00000541953 POLR3DP05423 398 aaPredicted RBP18.78■□□□□ 0.6
CLSTN3-213ENST00000541953 MDM2Q00987 491 aaPredicted RBP18.78■□□□□ 0.6
CLSTN3-213ENST00000541953 TDHQ8IZJ6 230 aa18.78■□□□□ 0.6
CLSTN3-213ENST00000541953 DNAJC2Q99543 621 aaKnown RBP18.78■□□□□ 0.6
CLSTN3-213ENST00000541953 CWC22Q9HCG8 908 aaKnown RBP18.78■□□□□ 0.6
CLSTN3-213ENST00000541953 DCP1AQ9NPI6 582 aaPredicted RBP18.78■□□□□ 0.6
CLSTN3-213ENST00000541953 MCM9Q9NXL9 1143 aa18.78■□□□□ 0.6
CLSTN3-213ENST00000541953 COL11A1P12107 1806 aaPredicted RBP18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms