RNA–Protein interactions for RNA: ENST00000541667.5

CLSTN3-211, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 671 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-211ENST00000541667 H0YGN5 161 aa14.3□□□□□ -0.12
CLSTN3-211ENST00000541667 POLR3DP05423 398 aaPredicted RBP14.3□□□□□ -0.12
CLSTN3-211ENST00000541667 IRX3P78415 501 aaPredicted RBP14.3□□□□□ -0.12
CLSTN3-211ENST00000541667 SEPT2Q15019 361 aa14.3□□□□□ -0.12
CLSTN3-211ENST00000541667 RAB3GAP1Q15042 981 aa14.3□□□□□ -0.12
CLSTN3-211ENST00000541667 HABP4Q5JVS0 413 aaKnown RBP14.3□□□□□ -0.12
CLSTN3-211ENST00000541667 SLC44A5Q8NCS7 719 aa14.3□□□□□ -0.12
CLSTN3-211ENST00000541667 LRRCC1Q9C099 1032 aa14.3□□□□□ -0.12
CLSTN3-211ENST00000541667 PORCNQ9H237 461 aa14.3□□□□□ -0.12
CLSTN3-211ENST00000541667 CEP290O15078 2479 aa14.29□□□□□ -0.12
CLSTN3-211ENST00000541667 MNX1P50219 401 aaPredicted RBP14.29□□□□□ -0.12
CLSTN3-211ENST00000541667 ERVK-9P63128 1117 aa14.29□□□□□ -0.12
CLSTN3-211ENST00000541667 ERVK-24P63145 666 aa14.29□□□□□ -0.12
CLSTN3-211ENST00000541667 UBE3CQ15386 1083 aa14.29□□□□□ -0.12
CLSTN3-211ENST00000541667 KIAA1755Q5JYT7 1200 aa14.29□□□□□ -0.12
CLSTN3-211ENST00000541667 DYNLL2Q96FJ2 89 aa14.29□□□□□ -0.12
CLSTN3-211ENST00000541667 DEFB118Q96PH6 123 aa14.29□□□□□ -0.12
CLSTN3-211ENST00000541667 PCDHB15Q9Y5E8 787 aa14.29□□□□□ -0.12
CLSTN3-211ENST00000541667 CYP2D7A0A087X1C5 515 aa14.28□□□□□ -0.12
CLSTN3-211ENST00000541667 USP17L15C9J2P7 530 aa14.28□□□□□ -0.12
CLSTN3-211ENST00000541667 USP17L13C9JLJ4 530 aa14.28□□□□□ -0.12
CLSTN3-211ENST00000541667 USP17L11C9JVI0 530 aa14.28□□□□□ -0.12
CLSTN3-211ENST00000541667 USP17L18D6R9N7 530 aa14.28□□□□□ -0.12
CLSTN3-211ENST00000541667 USP17L22D6RA61 530 aa14.28□□□□□ -0.12
CLSTN3-211ENST00000541667 USP17L17D6RBQ6 530 aa14.28□□□□□ -0.12
CLSTN3-211ENST00000541667 USP17L19D6RCP7 530 aa14.28□□□□□ -0.12
CLSTN3-211ENST00000541667 USP17L20D6RJB6 530 aa14.28□□□□□ -0.12
CLSTN3-211ENST00000541667 MBD4O95243 580 aa14.28□□□□□ -0.12
CLSTN3-211ENST00000541667 XRCC5P13010 732 aaKnown RBP14.28□□□□□ -0.12
CLSTN3-211ENST00000541667 VCAM1P19320 739 aa14.28□□□□□ -0.12
CLSTN3-211ENST00000541667 USP17L24Q0WX57 530 aa14.28□□□□□ -0.12
CLSTN3-211ENST00000541667 ZYXQ15942 572 aaKnown RBP14.28□□□□□ -0.12
CLSTN3-211ENST00000541667 MORN1Q5T089 497 aa14.28□□□□□ -0.12
CLSTN3-211ENST00000541667 MAP3K21Q5TCX8 1036 aa14.28□□□□□ -0.12
CLSTN3-211ENST00000541667 C12orf60Q5U649 245 aa14.28□□□□□ -0.12
CLSTN3-211ENST00000541667 LBX2Q6XYB7 198 aa14.28□□□□□ -0.12
CLSTN3-211ENST00000541667 TRIB2Q92519 343 aa14.28□□□□□ -0.12
CLSTN3-211ENST00000541667 PUS7LQ9H0K6 701 aaKnown RBP14.28□□□□□ -0.12
CLSTN3-211ENST00000541667 ATP8A2Q9NTI2 1148 aa14.28□□□□□ -0.12
CLSTN3-211ENST00000541667 CYP2B6P20813 491 aa14.27□□□□□ -0.13
CLSTN3-211ENST00000541667 USP14P54578 494 aa14.27□□□□□ -0.13
CLSTN3-211ENST00000541667 GCC1Q96CN9 775 aa14.27□□□□□ -0.13
CLSTN3-211ENST00000541667 CABP5Q9NP86 173 aa14.27□□□□□ -0.13
CLSTN3-211ENST00000541667 ECHDC1Q9NTX5 307 aa14.27□□□□□ -0.13
CLSTN3-211ENST00000541667 BTBD7Q9P203 1132 aa14.27□□□□□ -0.13
CLSTN3-211ENST00000541667 TAOK2Q9UL54 1235 aa14.27□□□□□ -0.13
CLSTN3-211ENST00000541667 COLQQ9Y215 455 aaPredicted RBP14.27□□□□□ -0.13
CLSTN3-211ENST00000541667 RABGAP1Q9Y3P9 1069 aa14.27□□□□□ -0.13
CLSTN3-211ENST00000541667 RPTORQ8N122 1335 aa14.26□□□□□ -0.13
CLSTN3-211ENST00000541667 USP17L12C9JPN9 530 aa14.26□□□□□ -0.13
CLSTN3-211ENST00000541667 USP17L21D6R901 530 aa14.26□□□□□ -0.13
CLSTN3-211ENST00000541667 IGHA2P01877 340 aa14.26□□□□□ -0.13
CLSTN3-211ENST00000541667 HMGCRP04035 888 aa14.26□□□□□ -0.13
CLSTN3-211ENST00000541667 AKR1B1P15121 316 aa14.26□□□□□ -0.13
CLSTN3-211ENST00000541667 CAPN2P17655 700 aa14.26□□□□□ -0.13
CLSTN3-211ENST00000541667 MAPK4P31152 587 aa14.26□□□□□ -0.13
CLSTN3-211ENST00000541667 GPR142Q7Z601 462 aa14.26□□□□□ -0.13
CLSTN3-211ENST00000541667 GTF3C2Q8WUA4 911 aaPredicted RBP14.26□□□□□ -0.13
CLSTN3-211ENST00000541667 STRBPQ96SI9 672 aaKnown RBP14.26□□□□□ -0.13
CLSTN3-211ENST00000541667 NUDT12Q9BQG2 462 aa14.26□□□□□ -0.13
CLSTN3-211ENST00000541667 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.26□□□□□ -0.136e-7■■■■□ 21.6
CLSTN3-211ENST00000541667 NAV1Q8NEY1 1877 aa14.26□□□□□ -0.13
CLSTN3-211ENST00000541667 RLFQ13129 1914 aa14.25□□□□□ -0.13
CLSTN3-211ENST00000541667 SPDYE16A6NNV3 312 aaPredicted RBP14.25□□□□□ -0.13
CLSTN3-211ENST00000541667 FARP2O94887 1054 aaPredicted RBP14.25□□□□□ -0.13
CLSTN3-211ENST00000541667 TFRCP02786 760 aaKnown RBP14.25□□□□□ -0.13
CLSTN3-211ENST00000541667 CDK8P49336 464 aa14.25□□□□□ -0.13
CLSTN3-211ENST00000541667 CCL14Q16627 93 aa14.25□□□□□ -0.13
CLSTN3-211ENST00000541667 TSHZ3Q63HK5 1081 aa14.25□□□□□ -0.13
CLSTN3-211ENST00000541667 CTR9Q6PD62 1173 aa14.25□□□□□ -0.13
CLSTN3-211ENST00000541667 PLEKHH3Q7Z736 793 aa14.25□□□□□ -0.13
CLSTN3-211ENST00000541667 FEZ1Q99689 392 aa14.25□□□□□ -0.13
CLSTN3-211ENST00000541667 PAGR1Q9BTK6 254 aa14.25□□□□□ -0.13
CLSTN3-211ENST00000541667 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.25□□□□□ -0.13
CLSTN3-211ENST00000541667 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.25□□□□□ -0.13
CLSTN3-211ENST00000541667 PRO3102Q9H379 93 aa14.25□□□□□ -0.13
CLSTN3-211ENST00000541667 RPAP3Q9H6T3 665 aaPredicted RBP14.25□□□□□ -0.13
CLSTN3-211ENST00000541667 SWAP70Q9UH65 585 aa14.25□□□□□ -0.13
CLSTN3-211ENST00000541667 RANBP2P49792 3224 aaKnown RBP14.25□□□□□ -0.13
CLSTN3-211ENST00000541667 BAZ2AQ9UIF9 1905 aaKnown RBP14.25□□□□□ -0.13
CLSTN3-211ENST00000541667 TMEM179Q6ZVK1 233 aa14.24□□□□□ -0.13
CLSTN3-211ENST00000541667 C16orf86Q6ZW13 317 aa14.24□□□□□ -0.13
CLSTN3-211ENST00000541667 CLEC10AQ8IUN9 316 aa14.24□□□□□ -0.13
CLSTN3-211ENST00000541667 DIS3LQ8TF46 1054 aaKnown RBP14.24□□□□□ -0.13
CLSTN3-211ENST00000541667 DPF3Q92784 378 aa14.24□□□□□ -0.13
CLSTN3-211ENST00000541667 OSBP2Q969R2 916 aa14.24□□□□□ -0.13
CLSTN3-211ENST00000541667 PAWRQ96IZ0 340 aaKnown RBP14.24□□□□□ -0.13
CLSTN3-211ENST00000541667 HMX1Q9NP08 348 aaPredicted RBP14.24□□□□□ -0.13
CLSTN3-211ENST00000541667 SLC4A4Q9Y6R1 1079 aa14.24□□□□□ -0.13
CLSTN3-211ENST00000541667 GSG1L2A8MUP6 293 aa14.23□□□□□ -0.13
CLSTN3-211ENST00000541667 MPHOSPH10O00566 681 aaKnown RBP14.23□□□□□ -0.13
CLSTN3-211ENST00000541667 PTPREP23469 700 aa14.23□□□□□ -0.13
CLSTN3-211ENST00000541667 FXR1P51114 621 aaKnown RBP eCLIP14.23□□□□□ -0.13
CLSTN3-211ENST00000541667 CACNB2Q08289 660 aaPredicted RBP14.23□□□□□ -0.13
CLSTN3-211ENST00000541667 COG2Q14746 738 aa14.23□□□□□ -0.13
CLSTN3-211ENST00000541667 LHX8Q68G74 356 aa14.23□□□□□ -0.13
CLSTN3-211ENST00000541667 KBTBD3Q8NAB2 608 aa14.23□□□□□ -0.13
CLSTN3-211ENST00000541667 OTUD7AQ8TE49 926 aaPredicted RBP14.23□□□□□ -0.13
CLSTN3-211ENST00000541667 SOCS4Q8WXH5 440 aa14.23□□□□□ -0.13
CLSTN3-211ENST00000541667 FLRT1Q9NZU1 646 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms