RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 USP21Q9UK80 565 aa19.35■□□□□ 0.69
USP28-208ENST00000540438 MYH15Q9Y2K3 1946 aa19.35■□□□□ 0.69
USP28-208ENST00000540438 TERF1P54274 439 aa19.35■□□□□ 0.69
USP28-208ENST00000540438 DHX8Q14562 1220 aaKnown RBP19.35■□□□□ 0.69
USP28-208ENST00000540438 AK7Q96M32 723 aa19.35■□□□□ 0.69
USP28-208ENST00000540438 CDCA7Q9BWT1 371 aaPredicted RBP19.35■□□□□ 0.69
USP28-208ENST00000540438 TRIM75PA6NK02 468 aa19.35■□□□□ 0.69
USP28-208ENST00000540438 C4AP0C0L4 1744 aa19.35■□□□□ 0.69
USP28-208ENST00000540438 C4BP0C0L5 1744 aa19.35■□□□□ 0.69
USP28-208ENST00000540438 MKNK2Q9HBH9 465 aa19.35■□□□□ 0.69
USP28-208ENST00000540438 INTS13Q9NVM9 706 aa19.35■□□□□ 0.69
USP28-208ENST00000540438 RAD21O60216 631 aa19.34■□□□□ 0.69
USP28-208ENST00000540438 CAVIN2O95810 425 aa19.34■□□□□ 0.69
USP28-208ENST00000540438 PTPREP23469 700 aa19.34■□□□□ 0.69
USP28-208ENST00000540438 FBXO33Q7Z6M2 555 aa19.34■□□□□ 0.69
USP28-208ENST00000540438 CTCFLQ8NI51 663 aaPredicted RBP19.34■□□□□ 0.69
USP28-208ENST00000540438 WASF1Q92558 559 aa19.34■□□□□ 0.69
USP28-208ENST00000540438 MXD3Q9BW11 206 aa19.34■□□□□ 0.69
USP28-208ENST00000540438 CCDC196A0A1B0GTZ2 297 aa19.34■□□□□ 0.69
USP28-208ENST00000540438 KRT2P35908 639 aa19.34■□□□□ 0.69
USP28-208ENST00000540438 RBM6P78332 1123 aaKnown RBP19.34■□□□□ 0.69
USP28-208ENST00000540438 PDCL2Q8N4E4 241 aa19.34■□□□□ 0.69
USP28-208ENST00000540438 SMARCE1Q969G3 411 aa19.34■□□□□ 0.69
USP28-208ENST00000540438 NARFQ9UHQ1 456 aa19.34■□□□□ 0.69
USP28-208ENST00000540438 THRAP3Q9Y2W1 955 aaKnown RBP19.34■□□□□ 0.69
USP28-208ENST00000540438 COL14A1Q05707 1796 aaKnown RBP19.33■□□□□ 0.69
USP28-208ENST00000540438 A0A0U1RQJ8 604 aa19.33■□□□□ 0.69
USP28-208ENST00000540438 CD44P16070 742 aaKnown RBP19.33■□□□□ 0.69
USP28-208ENST00000540438 TPM4P67936 248 aa19.33■□□□□ 0.69
USP28-208ENST00000540438 NCBP1Q09161 790 aaKnown RBP19.33■□□□□ 0.69
USP28-208ENST00000540438 ATRIPQ8WXE1 791 aa19.33■□□□□ 0.69
USP28-208ENST00000540438 CRNKL1Q9BZJ0 848 aaKnown RBP19.33■□□□□ 0.69
USP28-208ENST00000540438 EPC1Q9H2F5 836 aa19.33■□□□□ 0.69
USP28-208ENST00000540438 LRRC4BQ9NT99 713 aa19.33■□□□□ 0.69
USP28-208ENST00000540438 ZNF219Q9P2Y4 722 aaPredicted RBP19.33■□□□□ 0.69
USP28-208ENST00000540438 TUBE1Q9UJT0 475 aa19.33■□□□□ 0.69
USP28-208ENST00000540438 TEX33O43247 280 aa19.33■□□□□ 0.68
USP28-208ENST00000540438 RILPL1Q5EBL4 403 aa19.33■□□□□ 0.68
USP28-208ENST00000540438 TYW1BQ6NUM6 668 aa19.33■□□□□ 0.68
USP28-208ENST00000540438 CLEC4GQ6UXB4 293 aa19.33■□□□□ 0.68
USP28-208ENST00000540438 CICQ96RK0 1608 aaPredicted RBP19.33■□□□□ 0.68
USP28-208ENST00000540438 ERCC3P19447 782 aa19.33■□□□□ 0.68
USP28-208ENST00000540438 FUT2Q10981 343 aa19.33■□□□□ 0.68
USP28-208ENST00000540438 TICAM2Q86XR7 235 aa19.33■□□□□ 0.68
USP28-208ENST00000540438 SMTNL1A8MU46 457 aa19.32■□□□□ 0.68
USP28-208ENST00000540438 TOP1P11387 765 aaKnown RBP19.32■□□□□ 0.68
USP28-208ENST00000540438 TM4SF1P30408 202 aa19.32■□□□□ 0.68
USP28-208ENST00000540438 PICALMQ13492 652 aa19.32■□□□□ 0.68
USP28-208ENST00000540438 MTF1Q14872 753 aa19.32■□□□□ 0.68
USP28-208ENST00000540438 RASSF8Q8NHQ8 419 aa19.32■□□□□ 0.68
USP28-208ENST00000540438 ANKRD36CQ5JPF3 1778 aa19.32■□□□□ 0.68
USP28-208ENST00000540438 CCT6AP40227 531 aaKnown RBP19.32■□□□□ 0.68
USP28-208ENST00000540438 MDM2Q00987 491 aaPredicted RBP19.32■□□□□ 0.68
USP28-208ENST00000540438 FOXP1Q9H334 677 aaPredicted RBP19.32■□□□□ 0.68
USP28-208ENST00000540438 IL17RBQ9NRM6 502 aa19.32■□□□□ 0.68
USP28-208ENST00000540438 CDC25BP30305 580 aa19.31■□□□□ 0.68
USP28-208ENST00000540438 PPP1R13BQ96KQ4 1090 aa19.31■□□□□ 0.68
USP28-208ENST00000540438 EIF4ENIF1Q9NRA8 985 aaKnown RBP19.31■□□□□ 0.68
USP28-208ENST00000540438 DNAI1Q9UI46 699 aa19.31■□□□□ 0.68
USP28-208ENST00000540438 FAM205AQ6ZU69 1335 aa19.31■□□□□ 0.68
USP28-208ENST00000540438 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.31■□□□□ 0.68
USP28-208ENST00000540438 RPS6KA4O75676 772 aa19.31■□□□□ 0.68
USP28-208ENST00000540438 LDHBP07195 334 aaKnown RBP19.31■□□□□ 0.68
USP28-208ENST00000540438 HEATR3Q7Z4Q2 680 aa19.31■□□□□ 0.68
USP28-208ENST00000540438 TMTC2Q8N394 836 aa19.31■□□□□ 0.68
USP28-208ENST00000540438 IRX2Q9BZI1 471 aaPredicted RBP19.31■□□□□ 0.68
USP28-208ENST00000540438 PES1O00541 588 aaKnown RBP19.3■□□□□ 0.68
USP28-208ENST00000540438 PCNTO95613 3336 aa19.3■□□□□ 0.68
USP28-208ENST00000540438 DPYDQ12882 1025 aa19.3■□□□□ 0.68
USP28-208ENST00000540438 KARSQ15046 597 aaKnown RBP19.3■□□□□ 0.68
USP28-208ENST00000540438 ELF2Q15723 593 aa19.3■□□□□ 0.68
USP28-208ENST00000540438 NPY5RQ15761 445 aa19.3■□□□□ 0.68
USP28-208ENST00000540438 TTC38Q5R3I4 469 aa19.3■□□□□ 0.68
USP28-208ENST00000540438 MEX3CQ5U5Q3 659 aaKnown RBP19.3■□□□□ 0.68
USP28-208ENST00000540438 TMTC3Q6ZXV5 915 aa19.3■□□□□ 0.68
USP28-208ENST00000540438 PHF20Q9BVI0 1012 aa19.3■□□□□ 0.68
USP28-208ENST00000540438 ACTN4O43707 911 aaKnown RBP19.3■□□□□ 0.68
USP28-208ENST00000540438 UFL1O94874 794 aa19.3■□□□□ 0.68
USP28-208ENST00000540438 IL17AQ16552 155 aa19.3■□□□□ 0.68
USP28-208ENST00000540438 TRAPPC3LQ5T215 181 aa19.3■□□□□ 0.68
USP28-208ENST00000540438 RCSD1Q6JBY9 416 aa19.3■□□□□ 0.68
USP28-208ENST00000540438 UBA5Q9GZZ9 404 aa19.3■□□□□ 0.68
USP28-208ENST00000540438 DDX60Q8IY21 1712 aaKnown RBP19.29■□□□□ 0.68
USP28-208ENST00000540438 C6orf229H3BNL8 230 aa19.29■□□□□ 0.68
USP28-208ENST00000540438 CNBD1Q8NA66 436 aa19.29■□□□□ 0.68
USP28-208ENST00000540438 RNF26Q9BY78 433 aaPredicted RBP19.29■□□□□ 0.68
USP28-208ENST00000540438 KAT14Q9H8E8 782 aa19.29■□□□□ 0.68
USP28-208ENST00000540438 SRPRBQ9Y5M8 271 aaKnown RBP19.29■□□□□ 0.68
USP28-208ENST00000540438 BCL9LQ86UU0 1499 aa19.29■□□□□ 0.68
USP28-208ENST00000540438 BARGINQ6ZT62 677 aa19.29■□□□□ 0.68
USP28-208ENST00000540438 PNMA1Q8ND90 353 aa19.29■□□□□ 0.68
USP28-208ENST00000540438 ZSWIM4Q9H7M6 989 aa19.29■□□□□ 0.68
USP28-208ENST00000540438 XBP1P17861 261 aa19.28■□□□□ 0.68
USP28-208ENST00000540438 SLC35G1Q2M3R5 365 aa19.28■□□□□ 0.68
USP28-208ENST00000540438 USP17L2Q6R6M4 530 aa19.28■□□□□ 0.68
USP28-208ENST00000540438 CNTNAP5Q8WYK1 1306 aa19.28■□□□□ 0.68
USP28-208ENST00000540438 STK36Q9NRP7 1315 aa19.28■□□□□ 0.68
USP28-208ENST00000540438 TOM1O60784 492 aa19.28■□□□□ 0.68
USP28-208ENST00000540438 TSPY3P0CV98 308 aa19.28■□□□□ 0.68
USP28-208ENST00000540438 TSPY8P0CW00 308 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms