RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 CCDC102BQ68D86 513 aa15.26■□□□□ 0.03
CLSTN3-208ENST00000538933 PDLIM7Q9NR12 457 aa15.26■□□□□ 0.03
CLSTN3-208ENST00000538933 CDK5RAP2Q96SN8 1893 aa15.25■□□□□ 0.03
CLSTN3-208ENST00000538933 C19orf81C9J6K1 198 aa15.25■□□□□ 0.03
CLSTN3-208ENST00000538933 MSCO60682 206 aa15.25■□□□□ 0.03
CLSTN3-208ENST00000538933 CIAO1O76071 339 aa15.25■□□□□ 0.03
CLSTN3-208ENST00000538933 HOXC6P09630 235 aa15.25■□□□□ 0.03
CLSTN3-208ENST00000538933 ITGB8P26012 769 aa15.25■□□□□ 0.03
CLSTN3-208ENST00000538933 SHROOM1Q2M3G4 852 aaPredicted RBP15.25■□□□□ 0.03
CLSTN3-208ENST00000538933 GJC2Q5T442 439 aaPredicted RBP15.25■□□□□ 0.03
CLSTN3-208ENST00000538933 MFSD14CQ5VZR4 134 aa15.25■□□□□ 0.03
CLSTN3-208ENST00000538933 FAM122AQ96E09 287 aa15.25■□□□□ 0.03
CLSTN3-208ENST00000538933 EMILIN3Q9NT22 766 aa15.25■□□□□ 0.03
CLSTN3-208ENST00000538933 TMOD4Q9NZQ9 345 aa15.25■□□□□ 0.03
CLSTN3-208ENST00000538933 CEP126Q9P2H0 1117 aa15.25■□□□□ 0.03
CLSTN3-208ENST00000538933 ABCF2Q9UG63 623 aa15.25■□□□□ 0.03
CLSTN3-208ENST00000538933 HERC5Q9UII4 1024 aaKnown RBP15.25■□□□□ 0.03
CLSTN3-208ENST00000538933 FBXO3Q9UK99 471 aa15.25■□□□□ 0.03
CLSTN3-208ENST00000538933 MAP4K4O95819 1239 aaPredicted RBP15.24■□□□□ 0.03
CLSTN3-208ENST00000538933 TRIM60Q495X7 471 aa15.24■□□□□ 0.03
CLSTN3-208ENST00000538933 METTL16Q86W50 562 aaKnown RBP15.24■□□□□ 0.03
CLSTN3-208ENST00000538933 RPAP2Q8IXW5 612 aaPredicted RBP15.24■□□□□ 0.03
CLSTN3-208ENST00000538933 PAGR1Q9BTK6 254 aa15.24■□□□□ 0.03
CLSTN3-208ENST00000538933 SMCHD1A6NHR9 2005 aa15.24■□□□□ 0.03
CLSTN3-208ENST00000538933 SLC15A5A6NIM6 579 aa15.23■□□□□ 0.03
CLSTN3-208ENST00000538933 USP17L10C9JJH3 530 aa15.23■□□□□ 0.03
CLSTN3-208ENST00000538933 ASNSP08243 561 aa15.23■□□□□ 0.03
CLSTN3-208ENST00000538933 CYBAP13498 195 aa15.23■□□□□ 0.03
CLSTN3-208ENST00000538933 PTPREP23469 700 aa15.23■□□□□ 0.03
CLSTN3-208ENST00000538933 CNGA1P29973 690 aa15.23■□□□□ 0.03
CLSTN3-208ENST00000538933 CYP2C19P33261 490 aa15.23■□□□□ 0.03
CLSTN3-208ENST00000538933 MAP3K12Q12852 859 aa15.23■□□□□ 0.03
CLSTN3-208ENST00000538933 C1orf53Q5VUE5 145 aa15.23■□□□□ 0.03
CLSTN3-208ENST00000538933 SPTY2D1Q68D10 685 aaPredicted RBP15.23■□□□□ 0.03
CLSTN3-208ENST00000538933 CEP85Q6P2H3 762 aa15.23■□□□□ 0.03
CLSTN3-208ENST00000538933 NPLOC4Q8TAT6 608 aa15.23■□□□□ 0.03
CLSTN3-208ENST00000538933 GTF3C2Q8WUA4 911 aaPredicted RBP15.23■□□□□ 0.03
CLSTN3-208ENST00000538933 SIL1Q9H173 461 aa15.23■□□□□ 0.03
CLSTN3-208ENST00000538933 RWDD1Q9H446 243 aaPredicted RBP15.23■□□□□ 0.03
CLSTN3-208ENST00000538933 DNAJC18Q9H819 358 aa15.23■□□□□ 0.03
CLSTN3-208ENST00000538933 PRDM5Q9NQX1 630 aaPredicted RBP15.23■□□□□ 0.03
CLSTN3-208ENST00000538933 NDUFB9Q9Y6M9 179 aa15.23■□□□□ 0.03
CLSTN3-208ENST00000538933 SRGAP3O43295 1099 aa15.22■□□□□ 0.03
CLSTN3-208ENST00000538933 ATP8B2P98198 1209 aa15.22■□□□□ 0.03
CLSTN3-208ENST00000538933 B4GALNT3Q6L9W6 998 aa15.22■□□□□ 0.03
CLSTN3-208ENST00000538933 CCAR1Q8IX12 1150 aaKnown RBP15.22■□□□□ 0.03
CLSTN3-208ENST00000538933 ARRDC4Q8NCT1 418 aa15.22■□□□□ 0.03
CLSTN3-208ENST00000538933 ATXN2LQ8WWM7 1075 aaKnown RBP15.22■□□□□ 0.03
CLSTN3-208ENST00000538933 NSUN4Q96CB9 384 aaKnown RBP15.22■□□□□ 0.03
CLSTN3-208ENST00000538933 ASB2Q96Q27 587 aa15.22■□□□□ 0.03
CLSTN3-208ENST00000538933 PI4KBQ9UBF8 816 aa15.22■□□□□ 0.03
CLSTN3-208ENST00000538933 RABGAP1Q9Y3P9 1069 aa15.22■□□□□ 0.03
CLSTN3-208ENST00000538933 PCDHB15Q9Y5E8 787 aa15.22■□□□□ 0.03
CLSTN3-208ENST00000538933 PIEZO1Q92508 2521 aa15.22■□□□□ 0.03
CLSTN3-208ENST00000538933 FOCADQ5VW36 1801 aa15.22■□□□□ 0.03
CLSTN3-208ENST00000538933 TIMM10P62072 90 aa15.21■□□□□ 0.03
CLSTN3-208ENST00000538933 ATP2B2Q01814 1243 aa15.21■□□□□ 0.03
CLSTN3-208ENST00000538933 GRB14Q14449 540 aa15.21■□□□□ 0.03
CLSTN3-208ENST00000538933 ERICH6Q7L0X2 663 aa15.21■□□□□ 0.03
CLSTN3-208ENST00000538933 PLXNA1Q9UIW2 1896 aa15.2■□□□□ 0.02
CLSTN3-208ENST00000538933 TCF20Q9UGU0 1960 aaKnown RBP15.2■□□□□ 0.02
CLSTN3-208ENST00000538933 GLRX3O76003 335 aaKnown RBP15.2■□□□□ 0.02
CLSTN3-208ENST00000538933 DNAJB2P25686 324 aa15.2■□□□□ 0.02
CLSTN3-208ENST00000538933 IL15P40933 162 aaPredicted RBP15.2■□□□□ 0.02
CLSTN3-208ENST00000538933 ADCYAP1R1P41586 468 aa15.2■□□□□ 0.02
CLSTN3-208ENST00000538933 TLE2Q04725 743 aa15.2■□□□□ 0.02
CLSTN3-208ENST00000538933 ADAMTS19Q8TE59 1207 aa15.2■□□□□ 0.02
CLSTN3-208ENST00000538933 RNPC3Q96LT9 517 aaKnown RBP15.2■□□□□ 0.02
CLSTN3-208ENST00000538933 ZNF576Q9H609 170 aa15.2■□□□□ 0.02
CLSTN3-208ENST00000538933 ZBTB47Q9UFB7 747 aaPredicted RBP15.2■□□□□ 0.02
CLSTN3-208ENST00000538933 ZNF236Q9UL36 1845 aa15.2■□□□□ 0.02
CLSTN3-208ENST00000538933 OS9Q13438 667 aaPredicted RBP15.19■□□□□ 0.02
CLSTN3-208ENST00000538933 SH3RF3Q8TEJ3 882 aaPredicted RBP15.19■□□□□ 0.02
CLSTN3-208ENST00000538933 GINM1Q9NU53 330 aa15.19■□□□□ 0.02
CLSTN3-208ENST00000538933 BTBD7Q9P203 1132 aa15.19■□□□□ 0.02
CLSTN3-208ENST00000538933 ZNFX1Q9P2E3 1918 aaKnown RBP15.19■□□□□ 0.02
CLSTN3-208ENST00000538933 PNMA6EA0A0J9YXQ4 647 aa15.18■□□□□ 0.02
CLSTN3-208ENST00000538933 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.18■□□□□ 0.02
CLSTN3-208ENST00000538933 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.18■□□□□ 0.02
CLSTN3-208ENST00000538933 KBTBD13C9JR72 458 aa15.18■□□□□ 0.02
CLSTN3-208ENST00000538933 KIAA0355O15063 1070 aa15.18■□□□□ 0.02
CLSTN3-208ENST00000538933 LDHCP07864 332 aa15.18■□□□□ 0.02
CLSTN3-208ENST00000538933 CCNA1P78396 465 aa15.18■□□□□ 0.02
CLSTN3-208ENST00000538933 HDAC1Q13547 482 aaPredicted RBP15.18■□□□□ 0.02
CLSTN3-208ENST00000538933 AKNAD1Q5T1N1 836 aa15.18■□□□□ 0.02
CLSTN3-208ENST00000538933 ANO1Q5XXA6 986 aa15.18■□□□□ 0.02
CLSTN3-208ENST00000538933 USP17L2Q6R6M4 530 aa15.18■□□□□ 0.02
CLSTN3-208ENST00000538933 LBX2Q6XYB7 198 aa15.18■□□□□ 0.02
CLSTN3-208ENST00000538933 TBC1D9Q6ZT07 1266 aa15.18■□□□□ 0.02
CLSTN3-208ENST00000538933 FOXP4Q8IVH2 680 aaPredicted RBP15.18■□□□□ 0.02
CLSTN3-208ENST00000538933 TEX11Q8IYF3 940 aa15.18■□□□□ 0.02
CLSTN3-208ENST00000538933 FERMT2Q96AC1 680 aa15.18■□□□□ 0.02
CLSTN3-208ENST00000538933 C12orf42Q96LP6 360 aa15.18■□□□□ 0.02
CLSTN3-208ENST00000538933 DHX36Q9H2U1 1008 aaKnown RBP15.18■□□□□ 0.02
CLSTN3-208ENST00000538933 HMG20BQ9P0W2 317 aa15.18■□□□□ 0.02
CLSTN3-208ENST00000538933 ZBTB21Q9ULJ3 1066 aa15.18■□□□□ 0.02
CLSTN3-208ENST00000538933 PA2G4Q9UQ80 394 aaKnown RBP15.18■□□□□ 0.02
CLSTN3-208ENST00000538933 TACC3Q9Y6A5 838 aa15.18■□□□□ 0.02
CLSTN3-208ENST00000538933 SYNGAP1Q96PV0 1343 aa15.17■□□□□ 0.02
CLSTN3-208ENST00000538933 USP17L15C9J2P7 530 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms