RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 NUP133Q8WUM0 1156 aa13.16□□□□□ -0.3
SYNE1-234ENST00000536990 UBAC1Q9BSL1 405 aa13.16□□□□□ -0.3
SYNE1-234ENST00000536990 CSRNP2Q9H175 543 aa13.16□□□□□ -0.3
SYNE1-234ENST00000536990 ABCF2Q9UG63 623 aa13.16□□□□□ -0.3
SYNE1-234ENST00000536990 MINDY4BA8MYZ0 360 aa13.15□□□□□ -0.3
SYNE1-234ENST00000536990 ZNF654Q8IZM8 581 aa13.15□□□□□ -0.3
SYNE1-234ENST00000536990 RABGGTAQ92696 567 aa13.15□□□□□ -0.3
SYNE1-234ENST00000536990 DHX58Q96C10 678 aa13.15□□□□□ -0.3
SYNE1-234ENST00000536990 SHISA4Q96DD7 197 aa13.15□□□□□ -0.3
SYNE1-234ENST00000536990 PANX2Q96RD6 677 aa13.15□□□□□ -0.3
SYNE1-234ENST00000536990 CDC5LQ99459 802 aaKnown RBP13.15□□□□□ -0.3
SYNE1-234ENST00000536990 MYH6P13533 1939 aa13.15□□□□□ -0.3
SYNE1-234ENST00000536990 RCAN1P53805 252 aa13.15□□□□□ -0.3
SYNE1-234ENST00000536990 ITPK1Q13572 414 aa13.15□□□□□ -0.3
SYNE1-234ENST00000536990 KARSQ15046 597 aaKnown RBP13.15□□□□□ -0.3
SYNE1-234ENST00000536990 TEX35Q5T0J7 233 aa13.15□□□□□ -0.3
SYNE1-234ENST00000536990 FANCBQ8NB91 859 aa13.15□□□□□ -0.3
SYNE1-234ENST00000536990 PHLPP1O60346 1717 aa13.15□□□□□ -0.3
SYNE1-234ENST00000536990 A0A087X0B3 334 aa13.15□□□□□ -0.3
SYNE1-234ENST00000536990 TEX33O43247 280 aa13.15□□□□□ -0.3
SYNE1-234ENST00000536990 SDR42E1Q8WUS8 393 aa13.15□□□□□ -0.3
SYNE1-234ENST00000536990 PARD6BQ9BYG5 372 aa13.15□□□□□ -0.3
SYNE1-234ENST00000536990 CEP131Q9UPN4 1083 aa13.15□□□□□ -0.3
SYNE1-234ENST00000536990 MYH14Q7Z406 1995 aaKnown RBP13.15□□□□□ -0.31
SYNE1-234ENST00000536990 WNK3Q9BYP7 1800 aa13.14□□□□□ -0.31
SYNE1-234ENST00000536990 MAGEB6P1A0A0J9YX57 407 aa13.14□□□□□ -0.31
SYNE1-234ENST00000536990 SOWAHDA6NJG2 315 aa13.14□□□□□ -0.31
SYNE1-234ENST00000536990 AKR1B15C9JRZ8 316 aaPredicted RBP13.14□□□□□ -0.31
SYNE1-234ENST00000536990 PBX1P40424 430 aa13.14□□□□□ -0.31
SYNE1-234ENST00000536990 CT47A1Q5JQC4 288 aaPredicted RBP13.14□□□□□ -0.31
SYNE1-234ENST00000536990 SH3RF1Q7Z6J0 888 aa13.14□□□□□ -0.31
SYNE1-234ENST00000536990 CABP5Q9NP86 173 aa13.14□□□□□ -0.31
SYNE1-234ENST00000536990 GNL3LQ9NVN8 582 aaKnown RBP13.14□□□□□ -0.31
SYNE1-234ENST00000536990 CD44P16070 742 aaKnown RBP13.14□□□□□ -0.31
SYNE1-234ENST00000536990 CUL4BQ13620 913 aa13.14□□□□□ -0.31
SYNE1-234ENST00000536990 SPATA1Q5VX52 437 aa13.14□□□□□ -0.31
SYNE1-234ENST00000536990 ESR2Q92731 530 aa13.14□□□□□ -0.31
SYNE1-234ENST00000536990 IRX2Q9BZI1 471 aaPredicted RBP13.14□□□□□ -0.31
SYNE1-234ENST00000536990 AATFQ9NY61 560 aaKnown RBP eCLIP13.14□□□□□ -0.31
SYNE1-234ENST00000536990 ZNF652Q9Y2D9 606 aa13.14□□□□□ -0.31
SYNE1-234ENST00000536990 ADGRG1Q9Y653 693 aa13.14□□□□□ -0.31
SYNE1-234ENST00000536990 COL16A1Q07092 1604 aaPredicted RBP13.14□□□□□ -0.31
SYNE1-234ENST00000536990 FAM205CA6NFA0 338 aa13.13□□□□□ -0.31
SYNE1-234ENST00000536990 CCDC175P0C221 793 aa13.13□□□□□ -0.31
SYNE1-234ENST00000536990 ATP2B1P20020 1258 aa13.13□□□□□ -0.31
SYNE1-234ENST00000536990 RAD9BQ6WBX8 426 aa13.13□□□□□ -0.31
SYNE1-234ENST00000536990 ADGRA1Q86SQ6 560 aa13.13□□□□□ -0.31
SYNE1-234ENST00000536990 POLR3GO15318 223 aaPredicted RBP13.13□□□□□ -0.31
SYNE1-234ENST00000536990 GYG1P46976 350 aa13.13□□□□□ -0.31
SYNE1-234ENST00000536990 AKAP17AQ02040 695 aaKnown RBP13.13□□□□□ -0.31
SYNE1-234ENST00000536990 RBL2Q08999 1139 aa13.13□□□□□ -0.31
SYNE1-234ENST00000536990 CDKAL1Q5VV42 579 aa13.13□□□□□ -0.31
SYNE1-234ENST00000536990 CCDC12Q8WUD4 166 aaPredicted RBP13.13□□□□□ -0.31
SYNE1-234ENST00000536990 GOLGA1Q92805 767 aa13.13□□□□□ -0.31
SYNE1-234ENST00000536990 ADD3Q9UEY8 706 aaKnown RBP13.13□□□□□ -0.31
SYNE1-234ENST00000536990 ANAPC4Q9UJX5 808 aa13.13□□□□□ -0.31
SYNE1-234ENST00000536990 PPP2R5BQ15173 497 aa13.13□□□□□ -0.31
SYNE1-234ENST00000536990 ANKRD18AQ8IVF6 992 aa13.13□□□□□ -0.31
SYNE1-234ENST00000536990 MARCH10Q8NA82 808 aaPredicted RBP13.13□□□□□ -0.31
SYNE1-234ENST00000536990 EPSTI1Q96J88 318 aa13.13□□□□□ -0.31
SYNE1-234ENST00000536990 FUT8Q9BYC5 575 aa13.13□□□□□ -0.31
SYNE1-234ENST00000536990 CALCOCO1Q9P1Z2 691 aa13.13□□□□□ -0.31
SYNE1-234ENST00000536990 THRAP3Q9Y2W1 955 aaKnown RBP13.13□□□□□ -0.31
SYNE1-234ENST00000536990 TNKSO95271 1327 aa13.12□□□□□ -0.31
SYNE1-234ENST00000536990 SPATA31A1Q5TZJ5 1347 aa13.12□□□□□ -0.31
SYNE1-234ENST00000536990 A0A0U1RQJ8 604 aa13.12□□□□□ -0.31
SYNE1-234ENST00000536990 SEC23AQ15436 765 aa13.12□□□□□ -0.31
SYNE1-234ENST00000536990 EARS2Q5JPH6 523 aaKnown RBP13.12□□□□□ -0.31
SYNE1-234ENST00000536990 ATRIPQ8WXE1 791 aa13.12□□□□□ -0.31
SYNE1-234ENST00000536990 PAGE5Q96GU1 130 aa13.12□□□□□ -0.31
SYNE1-234ENST00000536990 NAA15Q9BXJ9 866 aaKnown RBP13.12□□□□□ -0.31
SYNE1-234ENST00000536990 ARFGAP3Q9NP61 516 aa13.12□□□□□ -0.31
SYNE1-234ENST00000536990 ZNF804BA4D1E1 1349 aa13.12□□□□□ -0.31
SYNE1-234ENST00000536990 TRIM75PA6NK02 468 aa13.12□□□□□ -0.31
SYNE1-234ENST00000536990 ADAMTS2O95450 1211 aa13.12□□□□□ -0.31
SYNE1-234ENST00000536990 OAS2P29728 719 aaKnown RBP13.12□□□□□ -0.31
SYNE1-234ENST00000536990 TXLNAP40222 546 aa13.12□□□□□ -0.31
SYNE1-234ENST00000536990 UBE4AQ14139 1066 aa13.12□□□□□ -0.31
SYNE1-234ENST00000536990 SMC1AQ14683 1233 aaKnown RBP13.12□□□□□ -0.31
SYNE1-234ENST00000536990 IGSF22Q8N9C0 903 aa13.12□□□□□ -0.31
SYNE1-234ENST00000536990 RNF26Q9BY78 433 aaPredicted RBP13.12□□□□□ -0.31
SYNE1-234ENST00000536990 SYNRGQ9UMZ2 1314 aa13.12□□□□□ -0.31
SYNE1-234ENST00000536990 LAMB2P55268 1798 aa13.12□□□□□ -0.31
SYNE1-234ENST00000536990 MYH2Q9UKX2 1941 aa13.12□□□□□ -0.31
SYNE1-234ENST00000536990 KDM4FA0A1W2PPD8 638 aa13.11□□□□□ -0.31
SYNE1-234ENST00000536990 XBP1P17861 261 aa13.11□□□□□ -0.31
SYNE1-234ENST00000536990 PKN1Q16512 942 aa13.11□□□□□ -0.31
SYNE1-234ENST00000536990 CAVIN4Q5BKX8 364 aa13.11□□□□□ -0.31
SYNE1-234ENST00000536990 BCL9LQ86UU0 1499 aa13.11□□□□□ -0.31
SYNE1-234ENST00000536990 ZCCHC17Q9NP64 241 aaKnown RBP13.11□□□□□ -0.31
SYNE1-234ENST00000536990 PPP1R3GB7ZBB8 358 aa13.11□□□□□ -0.31
SYNE1-234ENST00000536990 FECHP22830 423 aa13.11□□□□□ -0.31
SYNE1-234ENST00000536990 CASP1P29466 404 aa13.11□□□□□ -0.31
SYNE1-234ENST00000536990 AFMP43652 599 aa13.11□□□□□ -0.31
SYNE1-234ENST00000536990 STX17P56962 302 aa13.11□□□□□ -0.31
SYNE1-234ENST00000536990 FUT2Q10981 343 aa13.11□□□□□ -0.31
SYNE1-234ENST00000536990 DPYDQ12882 1025 aa13.11□□□□□ -0.31
SYNE1-234ENST00000536990 JAKMIP3Q5VZ66 844 aa13.11□□□□□ -0.31
SYNE1-234ENST00000536990 KLHL10Q6JEL2 608 aa13.11□□□□□ -0.31
SYNE1-234ENST00000536990 SRGAP1Q7Z6B7 1085 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms