RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 FANCCQ00597 558 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 CEBPZQ03701 1054 aaKnown RBP7.26□□□□□ -1.25
SYNE1-233ENST00000535896 TRIM29Q14134 588 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 TERF2Q15554 542 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 KMT5BQ4FZB7 885 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 HSP90AB3PQ58FF7 597 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 NT5DC1Q5TFE4 455 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 JAKMIP3Q5VZ66 844 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 PPP1R18Q6NYC8 613 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 ARMCX5Q6P1M9 558 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.26□□□□□ -1.25
SYNE1-233ENST00000535896 SAMD7Q7Z3H4 446 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 TMC6Q7Z403 805 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 VSTM4Q8IW00 320 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 MSL3Q8N5Y2 521 aaKnown RBP7.26□□□□□ -1.25
SYNE1-233ENST00000535896 OSBP2Q969R2 916 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 MTRQ99707 1265 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 LRRC2Q9BYS8 371 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 FTOQ9C0B1 505 aaKnown RBP eCLIP7.26□□□□□ -1.25
SYNE1-233ENST00000535896 CNNM2Q9H8M5 875 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 IL21Q9HBE4 155 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 NCOA5Q9HCD5 579 aaKnown RBP7.26□□□□□ -1.25
SYNE1-233ENST00000535896 IFNKQ9P0W0 207 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 IQSEC3Q9UPP2 1182 aaPredicted RBP7.26□□□□□ -1.25
SYNE1-233ENST00000535896 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.26□□□□□ -1.25
SYNE1-233ENST00000535896 A0A1B0GUL6 1792 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 KIAA1551Q9HCM1 1747 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 MROH7-TTC4A0A0A0MT08 1334 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 LAMB1P07942 1786 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 NBPF26B4DH59 902 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 ATP5J2-PTCD1G3V325 749 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 SH2B2O14492 632 aaPredicted RBP7.25□□□□□ -1.25
SYNE1-233ENST00000535896 FOXP2O15409 715 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 GPAA1O43292 621 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 STX10O60499 249 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 BMP15O95972 392 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 UQCRFS1P1P0C7P4 283 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 ADD2P35612 726 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 ANTXR2P58335 489 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 TCIRG1Q13488 830 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 PTPAQ15257 358 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 ELF2Q15723 593 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 TSR1Q2NL82 804 aaKnown RBP7.25□□□□□ -1.25
SYNE1-233ENST00000535896 RILPL1Q5EBL4 403 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 GORABQ5T7V8 394 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 CCDC102BQ68D86 513 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 NBPF10Q6P3W6 841 aaKnown RBP7.25□□□□□ -1.25
SYNE1-233ENST00000535896 FBXO38Q6PIJ6 1188 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 VPS37DQ86XT2 251 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 COL23A1Q86Y22 540 aaPredicted RBP7.25□□□□□ -1.25
SYNE1-233ENST00000535896 NBPF15Q8N660 670 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 MLKLQ8NB16 471 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 ZNF592Q92610 1267 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 JARID2Q92833 1246 aaPredicted RBP7.25□□□□□ -1.25
SYNE1-233ENST00000535896 ARHGEF1Q92888 912 aaKnown RBP7.25□□□□□ -1.25
SYNE1-233ENST00000535896 XAGE2Q96GT9 111 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 NAA15Q9BXJ9 866 aaKnown RBP7.25□□□□□ -1.25
SYNE1-233ENST00000535896 PRDM10Q9NQV6 1147 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 NARFQ9UHQ1 456 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 CEP131Q9UPN4 1083 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 CLIC4Q9Y696 253 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 SCN7AQ01118 1682 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 MAST2Q6P0Q8 1798 aa7.25□□□□□ -1.25
SYNE1-233ENST00000535896 CCDC196A0A1B0GTZ2 297 aa7.24□□□□□ -1.25
SYNE1-233ENST00000535896 SMAPO00193 183 aa7.24□□□□□ -1.25
SYNE1-233ENST00000535896 SEMA3EO15041 775 aa7.24□□□□□ -1.25
SYNE1-233ENST00000535896 ZPR1O75312 459 aa7.24□□□□□ -1.25
SYNE1-233ENST00000535896 TUBBP07437 444 aa7.24□□□□□ -1.25
SYNE1-233ENST00000535896 SLFN14P0C7P3 912 aa7.24□□□□□ -1.25
SYNE1-233ENST00000535896 TOP1P11387 765 aaKnown RBP7.24□□□□□ -1.25
SYNE1-233ENST00000535896 GNAT2P19087 354 aa7.24□□□□□ -1.25
SYNE1-233ENST00000535896 ERCC5P28715 1186 aaPredicted RBP7.24□□□□□ -1.25
SYNE1-233ENST00000535896 ARID4AP29374 1257 aaPredicted RBP7.24□□□□□ -1.25
SYNE1-233ENST00000535896 NT5C2P49902 561 aa7.24□□□□□ -1.25
SYNE1-233ENST00000535896 UBASH3AP57075 661 aa7.24□□□□□ -1.25
SYNE1-233ENST00000535896 TIMM10P62072 90 aa7.24□□□□□ -1.25
SYNE1-233ENST00000535896 IFIT5Q13325 482 aaKnown RBP7.24□□□□□ -1.25
SYNE1-233ENST00000535896 WASHC4Q2M389 1173 aa7.24□□□□□ -1.25
SYNE1-233ENST00000535896 ZNF787Q6DD87 383 aa7.24□□□□□ -1.25
SYNE1-233ENST00000535896 APOA5Q6Q788 366 aa7.24□□□□□ -1.25
SYNE1-233ENST00000535896 KIF6Q6ZMV9 814 aa7.24□□□□□ -1.25
SYNE1-233ENST00000535896 KRBA2Q6ZNG9 492 aa7.24□□□□□ -1.25
SYNE1-233ENST00000535896 KRI1Q8N9T8 703 aaKnown RBP7.24□□□□□ -1.25
SYNE1-233ENST00000535896 ZBTB38Q8NAP3 1195 aaPredicted RBP7.24□□□□□ -1.25
SYNE1-233ENST00000535896 ENOX1Q8TC92 643 aaKnown RBP7.24□□□□□ -1.25
SYNE1-233ENST00000535896 MAP3K14Q99558 947 aa7.24□□□□□ -1.25
SYNE1-233ENST00000535896 PYM1Q9BRP8 204 aaKnown RBP7.24□□□□□ -1.25
SYNE1-233ENST00000535896 ALG1Q9BT22 464 aa7.24□□□□□ -1.25
SYNE1-233ENST00000535896 MTFR1LQ9H019 292 aa7.24□□□□□ -1.25
SYNE1-233ENST00000535896 HSD3B7Q9H2F3 369 aa7.24□□□□□ -1.25
SYNE1-233ENST00000535896 FOXP1Q9H334 677 aaPredicted RBP7.24□□□□□ -1.25
SYNE1-233ENST00000535896 NAP1L2Q9ULW6 460 aaPredicted RBP7.24□□□□□ -1.25
SYNE1-233ENST00000535896 ZNF652Q9Y2D9 606 aa7.24□□□□□ -1.25
SYNE1-233ENST00000535896 ZNF330Q9Y3S2 320 aaPredicted RBP7.24□□□□□ -1.25
SYNE1-233ENST00000535896 V9GYY5 206 aaPredicted RBP7.24□□□□□ -1.25
SYNE1-233ENST00000535896 COL24A1Q17RW2 1714 aa7.24□□□□□ -1.25
SYNE1-233ENST00000535896 FAM177BA6PVY3 158 aa7.23□□□□□ -1.25
SYNE1-233ENST00000535896 ERVV-1B6SEH8 477 aa7.23□□□□□ -1.25
SYNE1-233ENST00000535896 ZBTB43O43298 467 aa7.23□□□□□ -1.25
SYNE1-233ENST00000535896 TADA3O75528 432 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms