RNA–Protein interactions for RNA: ENST00000533309.5

TRIM3-213, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 1,647 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-213ENST00000533309 SHROOM1Q2M3G4 852 aaPredicted RBP18.67■□□□□ 0.58
TRIM3-213ENST00000533309 SMARCC2Q8TAQ2 1214 aa18.67■□□□□ 0.58
TRIM3-213ENST00000533309 LLPHQ9BRT6 129 aaKnown RBP18.67■□□□□ 0.58
TRIM3-213ENST00000533309 CHMP5Q9NZZ3 219 aa18.67■□□□□ 0.58
TRIM3-213ENST00000533309 SMC3Q9UQE7 1217 aa18.67■□□□□ 0.58
TRIM3-213ENST00000533309 MYH6P13533 1939 aa18.67■□□□□ 0.58
TRIM3-213ENST00000533309 GOLGA8AA7E2F4 631 aa18.67■□□□□ 0.58
TRIM3-213ENST00000533309 GJB2P29033 226 aa18.67■□□□□ 0.58
TRIM3-213ENST00000533309 CERKLQ49MI3 558 aaPredicted RBP18.67■□□□□ 0.58
TRIM3-213ENST00000533309 CLEC10AQ8IUN9 316 aa18.67■□□□□ 0.58
TRIM3-213ENST00000533309 CCDC144CPQ8IYA2 1237 aa18.67■□□□□ 0.58
TRIM3-213ENST00000533309 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.67■□□□□ 0.58
TRIM3-213ENST00000533309 MTMR4Q9NYA4 1195 aa18.67■□□□□ 0.58
TRIM3-213ENST00000533309 DDAH1O94760 285 aa18.66■□□□□ 0.58
TRIM3-213ENST00000533309 ADD1P35611 737 aaKnown RBP18.66■□□□□ 0.58
TRIM3-213ENST00000533309 JAG1P78504 1218 aa18.66■□□□□ 0.58
TRIM3-213ENST00000533309 SYNE3Q6ZMZ3 975 aa18.66■□□□□ 0.58
TRIM3-213ENST00000533309 CATIPQ7Z7H3 387 aa18.66■□□□□ 0.58
TRIM3-213ENST00000533309 TMEM47Q9BQJ4 181 aa18.66■□□□□ 0.58
TRIM3-213ENST00000533309 STX8Q9UNK0 236 aa18.66■□□□□ 0.58
TRIM3-213ENST00000533309 PITPNM2Q9BZ72 1349 aa18.66■□□□□ 0.58
TRIM3-213ENST00000533309 PKP1Q13835 747 aa18.65■□□□□ 0.58
TRIM3-213ENST00000533309 PNMA1Q8ND90 353 aa18.65■□□□□ 0.58
TRIM3-213ENST00000533309 PTPDC1A2A3K4 754 aa18.64■□□□□ 0.57
TRIM3-213ENST00000533309 POTECB2RU33 542 aa18.64■□□□□ 0.57
TRIM3-213ENST00000533309 MPHOSPH10O00566 681 aaKnown RBP18.64■□□□□ 0.57
TRIM3-213ENST00000533309 DHX16O60231 1041 aaKnown RBP18.64■□□□□ 0.57
TRIM3-213ENST00000533309 GDF11O95390 407 aa18.64■□□□□ 0.57
TRIM3-213ENST00000533309 GUCY1A2P33402 732 aa18.64■□□□□ 0.57
TRIM3-213ENST00000533309 NTRK3Q16288 839 aa18.64■□□□□ 0.57
TRIM3-213ENST00000533309 RTN1Q16799 776 aa18.64■□□□□ 0.57
TRIM3-213ENST00000533309 MIGA2Q7L4E1 593 aa18.64■□□□□ 0.57
TRIM3-213ENST00000533309 FANCBQ8NB91 859 aa18.64■□□□□ 0.57
TRIM3-213ENST00000533309 NUP133Q8WUM0 1156 aa18.64■□□□□ 0.57
TRIM3-213ENST00000533309 KAT14Q9H8E8 782 aa18.64■□□□□ 0.57
TRIM3-213ENST00000533309 BAZ2BQ9UIF8 2168 aaKnown RBP18.64■□□□□ 0.57
TRIM3-213ENST00000533309 SSC5DA1L4H1 1573 aa18.64■□□□□ 0.57
TRIM3-213ENST00000533309 EPHX2P34913 555 aa18.63■□□□□ 0.57
TRIM3-213ENST00000533309 ABCB5Q2M3G0 1257 aa18.63■□□□□ 0.57
TRIM3-213ENST00000533309 NBPF12Q5TAG4 269 aaPredicted RBP18.63■□□□□ 0.57
TRIM3-213ENST00000533309 CHMP4CQ96CF2 233 aa18.63■□□□□ 0.57
TRIM3-213ENST00000533309 PPFIA3O75145 1194 aa18.63■□□□□ 0.57
TRIM3-213ENST00000533309 CALM1P0DP23 149 aa18.63■□□□□ 0.57
TRIM3-213ENST00000533309 CALM2P0DP24 149 aa18.63■□□□□ 0.57
TRIM3-213ENST00000533309 CALM3P0DP25 149 aa18.63■□□□□ 0.57
TRIM3-213ENST00000533309 TOP1P11387 765 aaKnown RBP18.63■□□□□ 0.57
TRIM3-213ENST00000533309 TMEM179Q6ZVK1 233 aa18.63■□□□□ 0.57
TRIM3-213ENST00000533309 USP50Q70EL3 339 aaPredicted RBP18.63■□□□□ 0.57
TRIM3-213ENST00000533309 DOCK1Q14185 1865 aa18.62■□□□□ 0.57
TRIM3-213ENST00000533309 CPLX1O14810 134 aa18.62■□□□□ 0.57
TRIM3-213ENST00000533309 TTLL1O95922 423 aa18.62■□□□□ 0.57
TRIM3-213ENST00000533309 GH2P01242 217 aa18.62■□□□□ 0.57
TRIM3-213ENST00000533309 FDPSP14324 419 aaKnown RBP18.62■□□□□ 0.57
TRIM3-213ENST00000533309 SEPT2Q15019 361 aa18.62■□□□□ 0.57
TRIM3-213ENST00000533309 DDX11Q96FC9 970 aa18.62■□□□□ 0.57
TRIM3-213ENST00000533309 TAF1DQ9H5J8 278 aaPredicted RBP18.62■□□□□ 0.57
TRIM3-213ENST00000533309 ZDHHC9Q9Y397 364 aa18.62■□□□□ 0.57
TRIM3-213ENST00000533309 PPP2R3BQ9Y5P8 575 aa18.62■□□□□ 0.57
TRIM3-213ENST00000533309 PHF20L1A8MW92 1017 aa18.61■□□□□ 0.57
TRIM3-213ENST00000533309 SYT1P21579 422 aa18.61■□□□□ 0.57
TRIM3-213ENST00000533309 HMGN5P82970 282 aaKnown RBP18.61■□□□□ 0.57
TRIM3-213ENST00000533309 PPP2R5BQ15173 497 aa18.61■□□□□ 0.57
TRIM3-213ENST00000533309 SIAH1Q8IUQ4 282 aa18.61■□□□□ 0.57
TRIM3-213ENST00000533309 MAP3K14Q99558 947 aa18.61■□□□□ 0.57
TRIM3-213ENST00000533309 PAPPA2Q9BXP8 1791 aa18.6■□□□□ 0.57
TRIM3-213ENST00000533309 IQCA1LA6NCM1 817 aa18.6■□□□□ 0.57
TRIM3-213ENST00000533309 IFNAR1P17181 557 aa18.6■□□□□ 0.57
TRIM3-213ENST00000533309 RAB3GAP1Q15042 981 aa18.6■□□□□ 0.57
TRIM3-213ENST00000533309 PRAMEF18Q5VWM3 479 aa18.6■□□□□ 0.57
TRIM3-213ENST00000533309 RASGRP2Q7LDG7 609 aa18.6■□□□□ 0.57
TRIM3-213ENST00000533309 LRRC47Q8N1G4 583 aaKnown RBP18.6■□□□□ 0.57
TRIM3-213ENST00000533309 KANSL2Q9H9L4 492 aa18.6■□□□□ 0.57
TRIM3-213ENST00000533309 CLIP2Q9UDT6 1046 aa18.6■□□□□ 0.57
TRIM3-213ENST00000533309 ZBTB21Q9ULJ3 1066 aa18.6■□□□□ 0.57
TRIM3-213ENST00000533309 CCDC196A0A1B0GTZ2 297 aa18.6■□□□□ 0.57
TRIM3-213ENST00000533309 PLEKHA8P1O95397 391 aa18.6■□□□□ 0.57
TRIM3-213ENST00000533309 CAP2P40123 477 aa18.6■□□□□ 0.57
TRIM3-213ENST00000533309 NUCB2P80303 420 aa18.6■□□□□ 0.57
TRIM3-213ENST00000533309 FUT2Q10981 343 aa18.6■□□□□ 0.57
TRIM3-213ENST00000533309 GRM4Q14833 912 aa18.6■□□□□ 0.57
TRIM3-213ENST00000533309 NBPF11Q86T75 865 aa18.6■□□□□ 0.57
TRIM3-213ENST00000533309 PHKBQ93100 1093 aa18.6■□□□□ 0.57
TRIM3-213ENST00000533309 RBM28Q9NW13 759 aaKnown RBP18.6■□□□□ 0.57
TRIM3-213ENST00000533309 NYAP2Q9P242 653 aa18.6■□□□□ 0.57
TRIM3-213ENST00000533309 CDKL5O76039 1030 aa18.59■□□□□ 0.57
TRIM3-213ENST00000533309 BRD1O95696 1058 aa18.59■□□□□ 0.57
TRIM3-213ENST00000533309 EEF2P13639 858 aaKnown RBP18.59■□□□□ 0.57
TRIM3-213ENST00000533309 ICA1Q05084 483 aa18.59■□□□□ 0.57
TRIM3-213ENST00000533309 PPP4R3BQ5MIZ7 849 aa18.59■□□□□ 0.57
TRIM3-213ENST00000533309 CPLX2Q6PUV4 134 aaKnown RBP18.59■□□□□ 0.57
TRIM3-213ENST00000533309 TMTC3Q6ZXV5 915 aa18.59■□□□□ 0.57
TRIM3-213ENST00000533309 CMTR1Q8N1G2 835 aaKnown RBP18.59■□□□□ 0.57
TRIM3-213ENST00000533309 CTCFLQ8NI51 663 aaPredicted RBP18.59■□□□□ 0.57
TRIM3-213ENST00000533309 ZC3H15Q8WU90 426 aaKnown RBP18.59■□□□□ 0.57
TRIM3-213ENST00000533309 MKL1Q969V6 931 aa18.59■□□□□ 0.57
TRIM3-213ENST00000533309 DCPSQ96C86 337 aaKnown RBP18.59■□□□□ 0.57
TRIM3-213ENST00000533309 CABP5Q9NP86 173 aa18.59■□□□□ 0.57
TRIM3-213ENST00000533309 OTOFQ9HC10 1997 aa18.58■□□□□ 0.57
TRIM3-213ENST00000533309 STK36Q9NRP7 1315 aa18.58■□□□□ 0.57
TRIM3-213ENST00000533309 ADM5C9JUS6 153 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms