RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 SLFN14P0C7P3 912 aa6.66□□□□□ -1.34
CD44-236ENST00000533222 BMP3P12645 472 aa6.66□□□□□ -1.34
CD44-236ENST00000533222 PEX19P40855 299 aa6.66□□□□□ -1.34
CD44-236ENST00000533222 ASPAP45381 313 aa6.66□□□□□ -1.34
CD44-236ENST00000533222 CD151P48509 253 aa6.66□□□□□ -1.34
CD44-236ENST00000533222 ZNF654Q8IZM8 581 aa6.66□□□□□ -1.34
CD44-236ENST00000533222 FBLIM1Q8WUP2 373 aa6.66□□□□□ -1.34
CD44-236ENST00000533222 MYRFLQ96LU7 910 aa6.66□□□□□ -1.34
CD44-236ENST00000533222 TGIF2Q9GZN2 237 aa6.66□□□□□ -1.34
CD44-236ENST00000533222 GSX1Q9H4S2 264 aaPredicted RBP6.66□□□□□ -1.34
CD44-236ENST00000533222 CCSER2Q9H7U1 834 aa6.66□□□□□ -1.34
CD44-236ENST00000533222 LGR6Q9HBX8 967 aa6.66□□□□□ -1.34
CD44-236ENST00000533222 POLR3KQ9Y2Y1 108 aaPredicted RBP6.66□□□□□ -1.34
CD44-236ENST00000533222 CORINQ9Y5Q5 1042 aa6.66□□□□□ -1.34
CD44-236ENST00000533222 RAD54L2Q9Y4B4 1467 aa6.66□□□□□ -1.34
CD44-236ENST00000533222 CCDC196A0A1B0GTZ2 297 aa6.65□□□□□ -1.34
CD44-236ENST00000533222 DYNC1LI2O43237 492 aaPredicted RBP6.65□□□□□ -1.34
CD44-236ENST00000533222 GRIN3BO60391 1043 aa6.65□□□□□ -1.34
CD44-236ENST00000533222 RPL6Q02878 288 aaKnown RBP6.65□□□□□ -1.34
CD44-236ENST00000533222 RING1Q06587 406 aa6.65□□□□□ -1.34
CD44-236ENST00000533222 SCARA3Q6AZY7 606 aa6.65□□□□□ -1.34
CD44-236ENST00000533222 CYFIP1Q7L576 1253 aa6.65□□□□□ -1.34
CD44-236ENST00000533222 JMYQ8N9B5 988 aa6.65□□□□□ -1.34
CD44-236ENST00000533222 SLC26A8Q96RN1 970 aa6.65□□□□□ -1.34
CD44-236ENST00000533222 ACSS3Q9H6R3 686 aa6.65□□□□□ -1.34
CD44-236ENST00000533222 ABCF2Q9UG63 623 aa6.65□□□□□ -1.34
CD44-236ENST00000533222 SYNGAP1Q96PV0 1343 aa6.65□□□□□ -1.35
CD44-236ENST00000533222 RBAK-RBAKDNI3L0D1 243 aa6.64□□□□□ -1.35
CD44-236ENST00000533222 IPO7O95373 1038 aaKnown RBP6.64□□□□□ -1.35
CD44-236ENST00000533222 HSPA5P11021 654 aaKnown RBP6.64□□□□□ -1.35
CD44-236ENST00000533222 GTF2F1P35269 517 aaKnown RBP eCLIP6.64□□□□□ -1.35
CD44-236ENST00000533222 ERVK-24P63145 666 aa6.64□□□□□ -1.35
CD44-236ENST00000533222 FAM50AQ14320 339 aaKnown RBP6.64□□□□□ -1.35
CD44-236ENST00000533222 ZRSR2Q15696 482 aaKnown RBP6.64□□□□□ -1.35
CD44-236ENST00000533222 SEZ6Q53EL9 994 aa6.64□□□□□ -1.35
CD44-236ENST00000533222 ZBTB37Q5TC79 503 aa6.64□□□□□ -1.35
CD44-236ENST00000533222 REC114Q7Z4M0 266 aa6.64□□□□□ -1.35
CD44-236ENST00000533222 CCDC84Q86UT8 332 aaPredicted RBP6.64□□□□□ -1.35
CD44-236ENST00000533222 FAM20CQ8IXL6 584 aa6.64□□□□□ -1.35
CD44-236ENST00000533222 PDCL2Q8N4E4 241 aa6.64□□□□□ -1.35
CD44-236ENST00000533222 ISL2Q96A47 359 aa6.64□□□□□ -1.35
CD44-236ENST00000533222 TEX13AQ9BXU3 409 aaPredicted RBP6.64□□□□□ -1.35
CD44-236ENST00000533222 ATXN3LQ9H3M9 355 aa6.64□□□□□ -1.35
CD44-236ENST00000533222 SEMA6CQ9H3T2 930 aa6.64□□□□□ -1.35
CD44-236ENST00000533222 FBRSQ9HAH7 460 aa6.64□□□□□ -1.35
CD44-236ENST00000533222 SYNPO2Q9UMS6 1093 aa6.64□□□□□ -1.35
CD44-236ENST00000533222 DAGLAQ9Y4D2 1042 aa6.64□□□□□ -1.35
CD44-236ENST00000533222 RNF123Q5XPI4 1314 aa6.64□□□□□ -1.35
CD44-236ENST00000533222 SYNRGQ9UMZ2 1314 aa6.64□□□□□ -1.35
CD44-236ENST00000533222 MSTNO14793 375 aa6.63□□□□□ -1.35
CD44-236ENST00000533222 RNGTTO60942 597 aaKnown RBP6.63□□□□□ -1.35
CD44-236ENST00000533222 EIF3JO75822 258 aaKnown RBP6.63□□□□□ -1.35
CD44-236ENST00000533222 BPNT1O95861 308 aa6.63□□□□□ -1.35
CD44-236ENST00000533222 NFICP08651 508 aa6.63□□□□□ -1.35
CD44-236ENST00000533222 GUCY2CP25092 1073 aa6.63□□□□□ -1.35
CD44-236ENST00000533222 MAP4P27816 1152 aaKnown RBP6.63□□□□□ -1.35
CD44-236ENST00000533222 RXRBP28702 533 aa6.63□□□□□ -1.35
CD44-236ENST00000533222 GRK4P32298 578 aa6.63□□□□□ -1.35
CD44-236ENST00000533222 USP11P51784 963 aa6.63□□□□□ -1.35
CD44-236ENST00000533222 APOBRQ0VD83 1088 aa6.63□□□□□ -1.35
CD44-236ENST00000533222 MPP2Q14168 576 aa6.63□□□□□ -1.35
CD44-236ENST00000533222 GJC2Q5T442 439 aaPredicted RBP6.63□□□□□ -1.35
CD44-236ENST00000533222 HDXQ7Z353 690 aa6.63□□□□□ -1.35
CD44-236ENST00000533222 NME8Q8N427 588 aa6.63□□□□□ -1.35
CD44-236ENST00000533222 NGEFQ8N5V2 710 aa6.63□□□□□ -1.35
CD44-236ENST00000533222 RNF214Q8ND24 703 aa6.63□□□□□ -1.35
CD44-236ENST00000533222 SGSM3Q96HU1 749 aa6.63□□□□□ -1.35
CD44-236ENST00000533222 TINF2Q9BSI4 451 aa6.63□□□□□ -1.35
CD44-236ENST00000533222 NT5C1AQ9BXI3 368 aa6.63□□□□□ -1.35
CD44-236ENST00000533222 LRRC3Q9BY71 257 aa6.63□□□□□ -1.35
CD44-236ENST00000533222 UBA5Q9GZZ9 404 aa6.63□□□□□ -1.35
CD44-236ENST00000533222 KCNF1Q9H3M0 494 aa6.63□□□□□ -1.35
CD44-236ENST00000533222 PIDD1Q9HB75 910 aa6.63□□□□□ -1.35
CD44-236ENST00000533222 PICK1Q9NRD5 415 aa6.63□□□□□ -1.35
CD44-236ENST00000533222 PEG3Q9GZU2 1588 aa6.62□□□□□ -1.35
CD44-236ENST00000533222 HMX2A2RU54 273 aa6.62□□□□□ -1.35
CD44-236ENST00000533222 HMGN5P82970 282 aaKnown RBP6.62□□□□□ -1.35
CD44-236ENST00000533222 HNRNPUQ00839 825 aaKnown RBP eCLIP6.62□□□□□ -1.35
CD44-236ENST00000533222 NKG7Q16617 165 aa6.62□□□□□ -1.35
CD44-236ENST00000533222 RSPO4Q2I0M5 234 aaPredicted RBP6.62□□□□□ -1.35
CD44-236ENST00000533222 BEND4Q6ZU67 534 aa6.62□□□□□ -1.35
CD44-236ENST00000533222 DDX46Q7L014 1031 aaKnown RBP6.62□□□□□ -1.35
CD44-236ENST00000533222 ZSCAN30Q86W11 494 aa6.62□□□□□ -1.35
CD44-236ENST00000533222 SHISA5Q8N114 240 aa6.62□□□□□ -1.35
CD44-236ENST00000533222 CXorf38Q8TB03 319 aa6.62□□□□□ -1.35
CD44-236ENST00000533222 ERCC4Q92889 916 aaPredicted RBP6.62□□□□□ -1.35
CD44-236ENST00000533222 C7orf69Q9H7B7 122 aa6.62□□□□□ -1.35
CD44-236ENST00000533222 SUDS3Q9H7L9 328 aaPredicted RBP6.62□□□□□ -1.35
CD44-236ENST00000533222 CAPN10Q9HC96 672 aa6.62□□□□□ -1.35
CD44-236ENST00000533222 JADE2Q9NQC1 790 aa6.62□□□□□ -1.35
CD44-236ENST00000533222 SNCAIPQ9Y6H5 919 aa6.62□□□□□ -1.35
CD44-236ENST00000533222 DHX29Q7Z478 1369 aaKnown RBP6.61□□□□□ -1.35
CD44-236ENST00000533222 EXOC5O00471 708 aa6.61□□□□□ -1.35
CD44-236ENST00000533222 DHX15O43143 795 aaKnown RBP6.61□□□□□ -1.35
CD44-236ENST00000533222 DNAJA2O60884 412 aa6.61□□□□□ -1.35
CD44-236ENST00000533222 ETF1P62495 437 aaKnown RBP6.61□□□□□ -1.35
CD44-236ENST00000533222 SARNPP82979 210 aaKnown RBP6.61□□□□□ -1.35
CD44-236ENST00000533222 CLCQ05315 142 aa6.61□□□□□ -1.35
CD44-236ENST00000533222 NKAPLQ5M9Q1 402 aa6.61□□□□□ -1.35
CD44-236ENST00000533222 ICE2Q659A1 982 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms