RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 ZCCHC17Q9NP64 241 aaKnown RBP17.17■□□□□ 0.34
CPSF1-206ENST00000531480 PRDM1O75626 825 aa17.16■□□□□ 0.34
CPSF1-206ENST00000531480 CYP21A2P08686 494 aa17.16■□□□□ 0.34
CPSF1-206ENST00000531480 BACE1P56817 501 aa17.16■□□□□ 0.34
CPSF1-206ENST00000531480 HAND2P61296 217 aa17.16■□□□□ 0.34
CPSF1-206ENST00000531480 MKRN3Q13064 507 aaKnown RBP17.16■□□□□ 0.34
CPSF1-206ENST00000531480 SPP2Q13103 211 aa17.16■□□□□ 0.34
CPSF1-206ENST00000531480 NECTIN1Q15223 517 aa17.16■□□□□ 0.34
CPSF1-206ENST00000531480 KIAA1211Q6ZU35 1233 aa17.16■□□□□ 0.34
CPSF1-206ENST00000531480 BEGAINQ9BUH8 593 aa17.16■□□□□ 0.34
CPSF1-206ENST00000531480 CFHR5Q9BXR6 569 aa17.16■□□□□ 0.34
CPSF1-206ENST00000531480 RNF41Q9H4P4 317 aaPredicted RBP17.16■□□□□ 0.34
CPSF1-206ENST00000531480 KANSL2Q9H9L4 492 aa17.16■□□□□ 0.34
CPSF1-206ENST00000531480 INCENPQ9NQS7 918 aa17.16■□□□□ 0.34
CPSF1-206ENST00000531480 PRDM10Q9NQV6 1147 aa17.16■□□□□ 0.34
CPSF1-206ENST00000531480 RBM8AQ9Y5S9 174 aaKnown RBP17.16■□□□□ 0.34
CPSF1-206ENST00000531480 MYH4Q9Y623 1939 aa17.15■□□□□ 0.34
CPSF1-206ENST00000531480 C19orf81C9J6K1 198 aa17.15■□□□□ 0.34
CPSF1-206ENST00000531480 MFSD6Q6ZSS7 791 aa17.15■□□□□ 0.34
CPSF1-206ENST00000531480 IFNL1Q8IU54 200 aa17.15■□□□□ 0.34
CPSF1-206ENST00000531480 ZNF444Q8N0Y2 327 aaPredicted RBP17.15■□□□□ 0.34
CPSF1-206ENST00000531480 PROCA1Q8NCQ7 364 aaPredicted RBP17.15■□□□□ 0.34
CPSF1-206ENST00000531480 C12orf42Q96LP6 360 aa17.15■□□□□ 0.34
CPSF1-206ENST00000531480 KIAA1683Q9H0B3 1180 aa17.15■□□□□ 0.34
CPSF1-206ENST00000531480 ANO2Q9NQ90 1003 aa17.15■□□□□ 0.34
CPSF1-206ENST00000531480 CCL15-CCL14A0A0B4J2E2 113 aa17.14■□□□□ 0.33
CPSF1-206ENST00000531480 A0A1W2PRG0 241 aa17.14■□□□□ 0.33
CPSF1-206ENST00000531480 TRIM75PA6NK02 468 aa17.14■□□□□ 0.33
CPSF1-206ENST00000531480 USP17L10C9JJH3 530 aa17.14■□□□□ 0.33
CPSF1-206ENST00000531480 IGF2BP3O00425 579 aaKnown RBP eCLIP17.14■□□□□ 0.33
CPSF1-206ENST00000531480 RAB3GAP1Q15042 981 aa17.14■□□□□ 0.33
CPSF1-206ENST00000531480 CCL15Q16663 113 aa17.14■□□□□ 0.33
CPSF1-206ENST00000531480 GPAT2Q6NUI2 795 aa17.14■□□□□ 0.33
CPSF1-206ENST00000531480 STK11IPQ8N1F8 1099 aa17.14■□□□□ 0.33
CPSF1-206ENST00000531480 TCP11L1Q9NUJ3 509 aa17.14■□□□□ 0.33
CPSF1-206ENST00000531480 SAGE1Q9NXZ1 904 aa17.14■□□□□ 0.33
CPSF1-206ENST00000531480 NYAP2Q9P242 653 aa17.14■□□□□ 0.33
CPSF1-206ENST00000531480 SYNPO2Q9UMS6 1093 aa17.14■□□□□ 0.33
CPSF1-206ENST00000531480 NEDD4P46934 1319 aa17.14■□□□□ 0.33
CPSF1-206ENST00000531480 MPHOSPH10O00566 681 aaKnown RBP17.13■□□□□ 0.33
CPSF1-206ENST00000531480 TFAP4Q01664 338 aa17.13■□□□□ 0.33
CPSF1-206ENST00000531480 ICA1Q05084 483 aa17.13■□□□□ 0.33
CPSF1-206ENST00000531480 FASTKD5Q7L8L6 764 aaKnown RBP17.13■□□□□ 0.33
CPSF1-206ENST00000531480 ANKRD23Q86SG2 305 aa17.13■□□□□ 0.33
CPSF1-206ENST00000531480 NKX2-3Q8TAU0 364 aa17.13■□□□□ 0.33
CPSF1-206ENST00000531480 ACER1Q8TDN7 264 aa17.13■□□□□ 0.33
CPSF1-206ENST00000531480 KCNB2Q92953 911 aa17.13■□□□□ 0.33
CPSF1-206ENST00000531480 MKL1Q969V6 931 aa17.13■□□□□ 0.33
CPSF1-206ENST00000531480 IL17RBQ9NRM6 502 aa17.13■□□□□ 0.33
CPSF1-206ENST00000531480 MTMR4Q9NYA4 1195 aa17.13■□□□□ 0.33
CPSF1-206ENST00000531480 SLC45A1Q9Y2W3 748 aa17.13■□□□□ 0.33
CPSF1-206ENST00000531480 TMX2Q9Y320 296 aa17.13■□□□□ 0.33
CPSF1-206ENST00000531480 BTBD19C9JJ37 291 aa17.12■□□□□ 0.33
CPSF1-206ENST00000531480 CA12O43570 354 aa17.12■□□□□ 0.33
CPSF1-206ENST00000531480 REC8O95072 547 aa17.12■□□□□ 0.33
CPSF1-206ENST00000531480 ALDH1A1P00352 501 aa17.12■□□□□ 0.33
CPSF1-206ENST00000531480 TSPY3P0CV98 308 aa17.12■□□□□ 0.33
CPSF1-206ENST00000531480 TSPY8P0CW00 308 aa17.12■□□□□ 0.33
CPSF1-206ENST00000531480 MTMR2Q13614 643 aa17.12■□□□□ 0.33
CPSF1-206ENST00000531480 TSGA10IPQ3SY00 556 aa17.12■□□□□ 0.33
CPSF1-206ENST00000531480 FAM47AQ5JRC9 791 aa17.12■□□□□ 0.33
CPSF1-206ENST00000531480 FAM43AQ8N2R8 423 aa17.12■□□□□ 0.33
CPSF1-206ENST00000531480 CNNM2Q9H8M5 875 aa17.12■□□□□ 0.33
CPSF1-206ENST00000531480 EMILIN3Q9NT22 766 aa17.12■□□□□ 0.33
CPSF1-206ENST00000531480 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.12■□□□□ 0.33
CPSF1-206ENST00000531480 TAF6LQ9Y6J9 622 aa17.12■□□□□ 0.33
CPSF1-206ENST00000531480 CASP8AP2Q9UKL3 1982 aa17.11■□□□□ 0.33
CPSF1-206ENST00000531480 SLC27A2O14975 620 aa17.11■□□□□ 0.33
CPSF1-206ENST00000531480 EEF2P13639 858 aaKnown RBP17.11■□□□□ 0.33
CPSF1-206ENST00000531480 USP14P54578 494 aa17.11■□□□□ 0.33
CPSF1-206ENST00000531480 HMGCS2P54868 508 aa17.11■□□□□ 0.33
CPSF1-206ENST00000531480 PPP4R3BQ5MIZ7 849 aa17.11■□□□□ 0.33
CPSF1-206ENST00000531480 USP17L2Q6R6M4 530 aa17.11■□□□□ 0.33
CPSF1-206ENST00000531480 STOX1Q6ZVD7 989 aa17.11■□□□□ 0.33
CPSF1-206ENST00000531480 CLEC10AQ8IUN9 316 aa17.11■□□□□ 0.33
CPSF1-206ENST00000531480 ESR2Q92731 530 aa17.11■□□□□ 0.33
CPSF1-206ENST00000531480 CEP95Q96GE4 821 aa17.11■□□□□ 0.33
CPSF1-206ENST00000531480 RNF186Q9NXI6 227 aa17.11■□□□□ 0.33
CPSF1-206ENST00000531480 AGTPBP1Q9UPW5 1226 aa17.11■□□□□ 0.33
CPSF1-206ENST00000531480 PARP14Q460N5 1801 aa17.11■□□□□ 0.33
CPSF1-206ENST00000531480 RLFQ13129 1914 aa17.11■□□□□ 0.33
CPSF1-206ENST00000531480 TSPY2A6NKD2 308 aa17.1■□□□□ 0.33
CPSF1-206ENST00000531480 E7EWF7 191 aa17.1■□□□□ 0.33
CPSF1-206ENST00000531480 RANBP6O60518 1105 aaKnown RBP17.1■□□□□ 0.33
CPSF1-206ENST00000531480 HOXA7P31268 230 aaPredicted RBP17.1■□□□□ 0.33
CPSF1-206ENST00000531480 NOM1Q5C9Z4 860 aaKnown RBP17.1■□□□□ 0.33
CPSF1-206ENST00000531480 CREB3L3Q68CJ9 461 aa17.1■□□□□ 0.33
CPSF1-206ENST00000531480 OTUD7BQ6GQQ9 843 aa17.1■□□□□ 0.33
CPSF1-206ENST00000531480 KRT23Q9C075 422 aa17.1■□□□□ 0.33
CPSF1-206ENST00000531480 SH2D4AQ9H788 454 aa17.1■□□□□ 0.33
CPSF1-206ENST00000531480 ARHGEF10LQ9HCE6 1279 aa17.1■□□□□ 0.33
CPSF1-206ENST00000531480 TTLL1O95922 423 aa17.09■□□□□ 0.33
CPSF1-206ENST00000531480 HSPA4P34932 840 aa17.09■□□□□ 0.33
CPSF1-206ENST00000531480 RCSD1Q6JBY9 416 aa17.09■□□□□ 0.33
CPSF1-206ENST00000531480 ANKS1AQ92625 1134 aa17.09■□□□□ 0.33
CPSF1-206ENST00000531480 LPAR1Q92633 364 aa17.09■□□□□ 0.33
CPSF1-206ENST00000531480 USP26Q9BXU7 913 aa17.09■□□□□ 0.33
CPSF1-206ENST00000531480 VCPKMTQ9H867 229 aa17.09■□□□□ 0.33
CPSF1-206ENST00000531480 ADGRA2Q96PE1 1338 aa17.09■□□□□ 0.33
CPSF1-206ENST00000531480 B4E1Z4 1266 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms