RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 TM9SF2Q99805 663 aa6.11□□□□□ -1.43
CD44-233ENST00000531141 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.11□□□□□ -1.43
CD44-233ENST00000531141 UPK3BL1B0FP48 263 aa6.1□□□□□ -1.43
CD44-233ENST00000531141 UPK3BL2E5RIL1 263 aa6.1□□□□□ -1.43
CD44-233ENST00000531141 IGF2BP3O00425 579 aaKnown RBP eCLIP6.1□□□□□ -1.43
CD44-233ENST00000531141 EOMESO95936 686 aa6.1□□□□□ -1.43
CD44-233ENST00000531141 FOSL1P15407 271 aa6.1□□□□□ -1.43
CD44-233ENST00000531141 NME1P15531 152 aaKnown RBP6.1□□□□□ -1.43
CD44-233ENST00000531141 DNAJA1P31689 397 aaKnown RBP6.1□□□□□ -1.43
CD44-233ENST00000531141 GRIK1P39086 918 aa6.1□□□□□ -1.43
CD44-233ENST00000531141 C22orf34Q6ZV56 151 aa6.1□□□□□ -1.43
CD44-233ENST00000531141 SHISA5Q8N114 240 aa6.1□□□□□ -1.43
CD44-233ENST00000531141 CPLX3Q8WVH0 158 aa6.1□□□□□ -1.43
CD44-233ENST00000531141 ATG4CQ96DT6 458 aa6.1□□□□□ -1.43
CD44-233ENST00000531141 SHDQ96IW2 340 aa6.1□□□□□ -1.43
CD44-233ENST00000531141 MKNK2Q9HBH9 465 aa6.1□□□□□ -1.43
CD44-233ENST00000531141 TPX2Q9ULW0 747 aaKnown RBP6.1□□□□□ -1.43
CD44-233ENST00000531141 RNF112Q9ULX5 631 aa6.1□□□□□ -1.43
CD44-233ENST00000531141 PRR19A6NJB7 356 aa6.09□□□□□ -1.43
CD44-233ENST00000531141 RGS13O14921 159 aa6.09□□□□□ -1.43
CD44-233ENST00000531141 TGFB1P01137 390 aa6.09□□□□□ -1.43
CD44-233ENST00000531141 SSBP05455 408 aaKnown RBP eCLIP6.09□□□□□ -1.43
CD44-233ENST00000531141 CYP7A1P22680 504 aa6.09□□□□□ -1.43
CD44-233ENST00000531141 RANGAP1P46060 587 aaPredicted RBP6.09□□□□□ -1.43
CD44-233ENST00000531141 GIPRP48546 466 aa6.09□□□□□ -1.43
CD44-233ENST00000531141 MCF2L2Q86YR7 1114 aa6.09□□□□□ -1.43
CD44-233ENST00000531141 C19orf47Q8N9M1 422 aaKnown RBP6.09□□□□□ -1.43
CD44-233ENST00000531141 PPP1R13LQ8WUF5 828 aa6.09□□□□□ -1.43
CD44-233ENST00000531141 ANTXR1Q9H6X2 564 aa6.09□□□□□ -1.43
CD44-233ENST00000531141 GNAT3A8MTJ3 354 aa6.08□□□□□ -1.44
CD44-233ENST00000531141 CYP26A1O43174 497 aa6.08□□□□□ -1.44
CD44-233ENST00000531141 GUCY2CP25092 1073 aa6.08□□□□□ -1.44
CD44-233ENST00000531141 KIR3DL1P43629 444 aa6.08□□□□□ -1.44
CD44-233ENST00000531141 CHMP4BP1P59074 171 aa6.08□□□□□ -1.44
CD44-233ENST00000531141 RNF4P78317 190 aa6.08□□□□□ -1.44
CD44-233ENST00000531141 SFRP5Q5T4F7 317 aa6.08□□□□□ -1.44
CD44-233ENST00000531141 INTS5Q6P9B9 1019 aaKnown RBP6.08□□□□□ -1.44
CD44-233ENST00000531141 ARHGAP27Q6ZUM4 889 aa6.08□□□□□ -1.44
CD44-233ENST00000531141 FAM214BQ7L5A3 538 aa6.08□□□□□ -1.44
CD44-233ENST00000531141 RNF141Q8WVD5 230 aa6.08□□□□□ -1.44
CD44-233ENST00000531141 KIF2CQ99661 725 aa6.08□□□□□ -1.44
CD44-233ENST00000531141 ASPNQ9BXN1 380 aa6.08□□□□□ -1.44
CD44-233ENST00000531141 CEP131Q9UPN4 1083 aa6.08□□□□□ -1.44
CD44-233ENST00000531141 COBLO75128 1261 aa6.07□□□□□ -1.44
CD44-233ENST00000531141 UBOX5O94941 541 aa6.07□□□□□ -1.44
CD44-233ENST00000531141 CEACAM5P06731 702 aa6.07□□□□□ -1.44
CD44-233ENST00000531141 ZNF865P0CJ78 1059 aaPredicted RBP6.07□□□□□ -1.44
CD44-233ENST00000531141 POLR2BP30876 1174 aaKnown RBP6.07□□□□□ -1.44
CD44-233ENST00000531141 GBP1P32455 592 aa6.07□□□□□ -1.44
CD44-233ENST00000531141 SF3A1Q15459 793 aaKnown RBP6.07□□□□□ -1.44
CD44-233ENST00000531141 INTS3Q68E01 1043 aaKnown RBP6.07□□□□□ -1.44
CD44-233ENST00000531141 MFSD4AQ8N468 514 aa6.07□□□□□ -1.44
CD44-233ENST00000531141 BAHD1Q8TBE0 780 aaPredicted RBP6.07□□□□□ -1.44
CD44-233ENST00000531141 HEXIM2Q96MH2 286 aaKnown RBP6.07□□□□□ -1.44
CD44-233ENST00000531141 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.07□□□□□ -1.44
CD44-233ENST00000531141 LRRC4CQ9HCJ2 640 aa6.07□□□□□ -1.44
CD44-233ENST00000531141 SLC12A7Q9Y666 1083 aa6.07□□□□□ -1.44
CD44-233ENST00000531141 OXCT1P55809 520 aa6.06□□□□□ -1.44
CD44-233ENST00000531141 MSMPQ1L6U9 139 aa6.06□□□□□ -1.44
CD44-233ENST00000531141 TNNI3KQ59H18 835 aa6.06□□□□□ -1.44
CD44-233ENST00000531141 CDH24Q86UP0 819 aa6.06□□□□□ -1.44
CD44-233ENST00000531141 FAM181AQ8N9Y4 354 aa6.06□□□□□ -1.44
CD44-233ENST00000531141 RIN3Q8TB24 985 aa6.06□□□□□ -1.44
CD44-233ENST00000531141 ANAPC16Q96DE5 110 aa6.06□□□□□ -1.44
CD44-233ENST00000531141 KREMEN1Q96MU8 473 aa6.06□□□□□ -1.44
CD44-233ENST00000531141 SLC9A7Q96T83 725 aa6.06□□□□□ -1.44
CD44-233ENST00000531141 TANGO6Q9C0B7 1094 aa6.06□□□□□ -1.44
CD44-233ENST00000531141 CLEC3AO75596 197 aa6.05□□□□□ -1.44
CD44-233ENST00000531141 ACRP10323 421 aa6.05□□□□□ -1.44
CD44-233ENST00000531141 ITIH2P19823 946 aa6.05□□□□□ -1.44
CD44-233ENST00000531141 CD97P48960 835 aa6.05□□□□□ -1.44
CD44-233ENST00000531141 CLCN7P51798 805 aa6.05□□□□□ -1.44
CD44-233ENST00000531141 FAM169BQ8N8A8 192 aa6.05□□□□□ -1.44
CD44-233ENST00000531141 PIWIL2Q8TC59 973 aaKnown RBP6.05□□□□□ -1.44
CD44-233ENST00000531141 NETO1Q8TDF5 533 aa6.05□□□□□ -1.44
CD44-233ENST00000531141 SREK1Q8WXA9 508 aaKnown RBP6.05□□□□□ -1.44
CD44-233ENST00000531141 DHRS1Q96LJ7 313 aa6.05□□□□□ -1.44
CD44-233ENST00000531141 PRKAG3Q9UGI9 489 aa6.05□□□□□ -1.44
CD44-233ENST00000531141 COL17A1Q9UMD9 1497 aaPredicted RBP6.04□□□□□ -1.44
CD44-233ENST00000531141 KIAA1324LA8MWY0 1029 aaPredicted RBP6.04□□□□□ -1.44
CD44-233ENST00000531141 CASP7P55210 303 aa6.04□□□□□ -1.44
CD44-233ENST00000531141 IFI16Q16666 785 aaKnown RBP6.04□□□□□ -1.44
CD44-233ENST00000531141 ZMYM1Q5SVZ6 1142 aa6.04□□□□□ -1.44
CD44-233ENST00000531141 LCE3BQ5TA77 95 aa6.04□□□□□ -1.44
CD44-233ENST00000531141 RUFY4Q6ZNE9 571 aa6.04□□□□□ -1.44
CD44-233ENST00000531141 TTC6Q86TZ1 520 aa6.04□□□□□ -1.44
CD44-233ENST00000531141 SMARCC1Q92922 1105 aaPredicted RBP6.04□□□□□ -1.44
CD44-233ENST00000531141 ARMC5Q96C12 935 aa6.04□□□□□ -1.44
CD44-233ENST00000531141 MISP3Q96FF7 219 aa6.04□□□□□ -1.44
CD44-233ENST00000531141 SLC6A18Q96N87 628 aa6.04□□□□□ -1.44
CD44-233ENST00000531141 TNKS2Q9H2K2 1166 aa6.04□□□□□ -1.44
CD44-233ENST00000531141 PHAXQ9H814 394 aaKnown RBP6.04□□□□□ -1.44
CD44-233ENST00000531141 ZNF408Q9H9D4 720 aa6.04□□□□□ -1.44
CD44-233ENST00000531141 CAPN6Q9Y6Q1 641 aa6.04□□□□□ -1.44
CD44-233ENST00000531141 U3KQE9 123 aa6.04□□□□□ -1.44
CD44-233ENST00000531141 TMEM265A0A087WTH1 108 aa6.03□□□□□ -1.44
CD44-233ENST00000531141 FAM155AB1AL88 458 aaPredicted RBP6.03□□□□□ -1.44
CD44-233ENST00000531141 SPINK2P20155 84 aa6.03□□□□□ -1.44
CD44-233ENST00000531141 HOXA10P31260 410 aaPredicted RBP6.03□□□□□ -1.44
CD44-233ENST00000531141 PMS1P54277 932 aaKnown RBP6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms