RNA–Protein interactions for RNA: ENST00000531131.1

NXF1-208, Transcript of nuclear RNA export factor 1, human

TSL 2 BASIC

Gene NXF1, Length 1,023 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-208	ENST00000531131	MTMR2	Q13614	643 aa		13.58	□□□□□ -0.24
NXF1-208	ENST00000531131	SEPT2	Q15019	361 aa		13.58	□□□□□ -0.24
NXF1-208	ENST00000531131	VPS53	Q5VIR6	699 aa		13.58	□□□□□ -0.24
NXF1-208	ENST00000531131	GPAT2	Q6NUI2	795 aa		13.58	□□□□□ -0.24
NXF1-208	ENST00000531131	GADL1	Q6ZQY3	521 aa		13.58	□□□□□ -0.24
NXF1-208	ENST00000531131	ZNF444	Q8N0Y2	327 aa	Predicted RBP	13.58	□□□□□ -0.24
NXF1-208	ENST00000531131	PARK7	Q99497	189 aa	Known RBP	13.58	□□□□□ -0.24
NXF1-208	ENST00000531131	DSCC1	Q9BVC3	393 aa		13.58	□□□□□ -0.24
NXF1-208	ENST00000531131	KIAA1683	Q9H0B3	1180 aa		13.58	□□□□□ -0.24
NXF1-208	ENST00000531131	KANSL2	Q9H9L4	492 aa		13.58	□□□□□ -0.24
NXF1-208	ENST00000531131	LOC285556	D6RIA3	1793 aa		13.58	□□□□□ -0.24
NXF1-208	ENST00000531131	PDE4DIP	Q5VU43	2346 aa		13.57	□□□□□ -0.24
NXF1-208	ENST00000531131	TLR2	O60603	784 aa		13.57	□□□□□ -0.24
NXF1-208	ENST00000531131	FKTN	O75072	461 aa		13.57	□□□□□ -0.24
NXF1-208	ENST00000531131	PC	P11498	1178 aa	Known RBP	13.57	□□□□□ -0.24
NXF1-208	ENST00000531131	GUCY1A2	P33402	732 aa		13.57	□□□□□ -0.24
NXF1-208	ENST00000531131	HMGCS2	P54868	508 aa		13.57	□□□□□ -0.24
NXF1-208	ENST00000531131	SHROOM1	Q2M3G4	852 aa	Predicted RBP	13.57	□□□□□ -0.24
NXF1-208	ENST00000531131	USP17L2	Q6R6M4	530 aa		13.57	□□□□□ -0.24
NXF1-208	ENST00000531131	C12orf42	Q96LP6	360 aa		13.57	□□□□□ -0.24
NXF1-208	ENST00000531131	FEZ1	Q99689	392 aa		13.57	□□□□□ -0.24
NXF1-208	ENST00000531131	ARHGEF10L	Q9HCE6	1279 aa		13.57	□□□□□ -0.24
NXF1-208	ENST00000531131	PNMA3	Q9UL41	463 aa		13.57	□□□□□ -0.24
NXF1-208	ENST00000531131	SMIM22	K7EJ46	135 aa		13.56	□□□□□ -0.24
NXF1-208	ENST00000531131	AKR1B1	P15121	316 aa		13.56	□□□□□ -0.24
NXF1-208	ENST00000531131	RASA1	P20936	1047 aa		13.56	□□□□□ -0.24
NXF1-208	ENST00000531131	HOXA7	P31268	230 aa	Predicted RBP	13.56	□□□□□ -0.24
NXF1-208	ENST00000531131	NT5C2	P49902	561 aa		13.56	□□□□□ -0.24
NXF1-208	ENST00000531131	ZNF296	Q8WUU4	475 aa	Predicted RBP	13.56	□□□□□ -0.24
NXF1-208	ENST00000531131	SH2D4A	Q9H788	454 aa		13.56	□□□□□ -0.24
NXF1-208	ENST00000531131	CTNNA3	Q9UI47	895 aa		13.56	□□□□□ -0.24
NXF1-208	ENST00000531131	FGR	P09769	529 aa		13.55	□□□□□ -0.24
NXF1-208	ENST00000531131	OSBP	P22059	807 aa		13.55	□□□□□ -0.24
NXF1-208	ENST00000531131	ICA1	Q05084	483 aa		13.55	□□□□□ -0.24
NXF1-208	ENST00000531131	PPP4R3B	Q5MIZ7	849 aa		13.55	□□□□□ -0.24
NXF1-208	ENST00000531131	R3HDML	Q9H3Y0	253 aa		13.55	□□□□□ -0.24
NXF1-208	ENST00000531131	EMILIN3	Q9NT22	766 aa		13.55	□□□□□ -0.24
NXF1-208	ENST00000531131	GREB1L	Q9C091	1923 aa	Predicted RBP	13.54	□□□□□ -0.24
NXF1-208	ENST00000531131	ORC4	O43929	436 aa		13.54	□□□□□ -0.24
NXF1-208	ENST00000531131	SP3	Q02447	781 aa		13.54	□□□□□ -0.24
NXF1-208	ENST00000531131	ARHGEF6	Q15052	776 aa		13.54	□□□□□ -0.24
NXF1-208	ENST00000531131	TREML2	Q5T2D2	321 aa		13.54	□□□□□ -0.24
NXF1-208	ENST00000531131	STK11IP	Q8N1F8	1099 aa		13.54	□□□□□ -0.24
NXF1-208	ENST00000531131	LPAR1	Q92633	364 aa		13.54	□□□□□ -0.24
NXF1-208	ENST00000531131	ERO1A	Q96HE7	468 aa		13.54	□□□□□ -0.24
NXF1-208	ENST00000531131	RNF41	Q9H4P4	317 aa	Predicted RBP	13.54	□□□□□ -0.24
NXF1-208	ENST00000531131	SYNPO2	Q9UMS6	1093 aa		13.54	□□□□□ -0.24
NXF1-208	ENST00000531131	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	13.54	□□□□□ -0.24
NXF1-208	ENST00000531131	TMX2	Q9Y320	296 aa		13.54	□□□□□ -0.24
NXF1-208	ENST00000531131	ZNF213	O14771	459 aa		13.53	□□□□□ -0.24
NXF1-208	ENST00000531131	SGSM2	O43147	1006 aa		13.53	□□□□□ -0.24
NXF1-208	ENST00000531131	TSPY3	P0CV98	308 aa		13.53	□□□□□ -0.24
NXF1-208	ENST00000531131	TSPY8	P0CW00	308 aa		13.53	□□□□□ -0.24
NXF1-208	ENST00000531131	GCLC	P48506	637 aa	Predicted RBP	13.53	□□□□□ -0.24
NXF1-208	ENST00000531131	CTDSPL2	Q05D32	466 aa		13.53	□□□□□ -0.24
NXF1-208	ENST00000531131	PKN2	Q16513	984 aa	Known RBP	13.53	□□□□□ -0.24
NXF1-208	ENST00000531131	CASC1	Q6TDU7	716 aa		13.53	□□□□□ -0.24
NXF1-208	ENST00000531131	C17orf99	Q6UX52	265 aa		13.53	□□□□□ -0.24
NXF1-208	ENST00000531131	SIAH1	Q8IUQ4	282 aa		13.53	□□□□□ -0.24
NXF1-208	ENST00000531131	NEDD1	Q8NHV4	660 aa		13.53	□□□□□ -0.24
NXF1-208	ENST00000531131	ACER1	Q8TDN7	264 aa		13.53	□□□□□ -0.24
NXF1-208	ENST00000531131	SMCR8	Q8TEV9	937 aa	Predicted RBP	13.53	□□□□□ -0.24
NXF1-208	ENST00000531131	GTF3C2	Q8WUA4	911 aa	Predicted RBP	13.53	□□□□□ -0.24
NXF1-208	ENST00000531131	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.53	□□□□□ -0.24
NXF1-208	ENST00000531131	NYAP2	Q9P242	653 aa		13.53	□□□□□ -0.24
NXF1-208	ENST00000531131	ADGRA2	Q96PE1	1338 aa		13.53	□□□□□ -0.24
NXF1-208	ENST00000531131	PLIN4	Q96Q06	1357 aa		13.53	□□□□□ -0.24
NXF1-208	ENST00000531131	IGKV6D-41	A0A0C4DH26	115 aa		13.52	□□□□□ -0.25
NXF1-208	ENST00000531131		A0A1W2PRG0	241 aa		13.52	□□□□□ -0.25
NXF1-208	ENST00000531131	USP17L15	C9J2P7	530 aa		13.52	□□□□□ -0.25
NXF1-208	ENST00000531131	USP17L13	C9JLJ4	530 aa		13.52	□□□□□ -0.25
NXF1-208	ENST00000531131	USP17L11	C9JVI0	530 aa		13.52	□□□□□ -0.25
NXF1-208	ENST00000531131	USP17L18	D6R9N7	530 aa		13.52	□□□□□ -0.25
NXF1-208	ENST00000531131	USP17L22	D6RA61	530 aa		13.52	□□□□□ -0.25
NXF1-208	ENST00000531131	USP17L17	D6RBQ6	530 aa		13.52	□□□□□ -0.25
NXF1-208	ENST00000531131	USP17L19	D6RCP7	530 aa		13.52	□□□□□ -0.25
NXF1-208	ENST00000531131	USP17L20	D6RJB6	530 aa		13.52	□□□□□ -0.25
NXF1-208	ENST00000531131	PRDM1	O75626	825 aa		13.52	□□□□□ -0.25
NXF1-208	ENST00000531131	CYP2C8	P10632	490 aa		13.52	□□□□□ -0.25
NXF1-208	ENST00000531131	EEF2	P13639	858 aa	Known RBP	13.52	□□□□□ -0.25
NXF1-208	ENST00000531131	IRX3	P78415	501 aa	Predicted RBP	13.52	□□□□□ -0.25
NXF1-208	ENST00000531131	TFAP4	Q01664	338 aa		13.52	□□□□□ -0.25
NXF1-208	ENST00000531131	USP17L24	Q0WX57	530 aa		13.52	□□□□□ -0.25
NXF1-208	ENST00000531131	KIF22	Q14807	665 aa		13.52	□□□□□ -0.25
NXF1-208	ENST00000531131	IMMT	Q16891	758 aa	Known RBP	13.52	□□□□□ -0.25
NXF1-208	ENST00000531131	AKNAD1	Q5T1N1	836 aa		13.52	□□□□□ -0.25
NXF1-208	ENST00000531131	MFSD6	Q6ZSS7	791 aa		13.52	□□□□□ -0.25
NXF1-208	ENST00000531131	CTU1	Q7Z7A3	348 aa	Known RBP	13.52	□□□□□ -0.25
NXF1-208	ENST00000531131	STAG1	Q8WVM7	1258 aa		13.52	□□□□□ -0.25
NXF1-208	ENST00000531131	ASCC2	Q9H1I8	757 aa	Predicted RBP	13.52	□□□□□ -0.25
NXF1-208	ENST00000531131	GOPC	Q9HD26	462 aa		13.52	□□□□□ -0.25
NXF1-208	ENST00000531131	LAMA4	Q16363	1823 aa		13.51	□□□□□ -0.25
NXF1-208	ENST00000531131	TSPY2	A6NKD2	308 aa		13.51	□□□□□ -0.25
NXF1-208	ENST00000531131	TTLL1	O95922	423 aa		13.51	□□□□□ -0.25
NXF1-208	ENST00000531131	GNRH1	P01148	92 aa		13.51	□□□□□ -0.25
NXF1-208	ENST00000531131	VCAM1	P19320	739 aa		13.51	□□□□□ -0.25
NXF1-208	ENST00000531131	ZYX	Q15942	572 aa	Known RBP	13.51	□□□□□ -0.25
NXF1-208	ENST00000531131	KIAA1211	Q6ZU35	1233 aa		13.51	□□□□□ -0.25
NXF1-208	ENST00000531131	MKL1	Q969V6	931 aa		13.51	□□□□□ -0.25
NXF1-208	ENST00000531131	IL25	Q9H293	177 aa		13.51	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms