RNA–Protein interactions for RNA: ENST00000529994.1

SF3B2-208, Transcript of splicing factor 3b subunit 2, human

TSL 2

Gene SF3B2, Length 1,004 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B2-208	ENST00000529994	G3BP1	Q13283	466 aa	Known RBP eCLIP	13.88	□□□□□ -0.19	6e-8	■■■□□ 15
SF3B2-208	ENST00000529994	GJC2	Q5T442	439 aa	Predicted RBP	13.88	□□□□□ -0.19
SF3B2-208	ENST00000529994	ANO1	Q5XXA6	986 aa		13.88	□□□□□ -0.19
SF3B2-208	ENST00000529994	METTL16	Q86W50	562 aa	Known RBP	13.88	□□□□□ -0.19
SF3B2-208	ENST00000529994	NPLOC4	Q8TAT6	608 aa		13.88	□□□□□ -0.19
SF3B2-208	ENST00000529994	CLUAP1	Q96AJ1	413 aa		13.88	□□□□□ -0.19
SF3B2-208	ENST00000529994	CDX2	Q99626	313 aa	Predicted RBP	13.88	□□□□□ -0.19
SF3B2-208	ENST00000529994	ATP11B	Q9Y2G3	1177 aa		13.88	□□□□□ -0.19
SF3B2-208	ENST00000529994	RABGAP1	Q9Y3P9	1069 aa		13.88	□□□□□ -0.19
SF3B2-208	ENST00000529994	RLF	Q13129	1914 aa		13.88	□□□□□ -0.19
SF3B2-208	ENST00000529994	SPTBN5	Q9NRC6	3674 aa	Known RBP	13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	SLC15A5	A6NIM6	579 aa		13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	USP17L15	C9J2P7	530 aa		13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	USP17L13	C9JLJ4	530 aa		13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	USP17L11	C9JVI0	530 aa		13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	USP17L18	D6R9N7	530 aa		13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	USP17L22	D6RA61	530 aa		13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	USP17L17	D6RBQ6	530 aa		13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	USP17L19	D6RCP7	530 aa		13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	USP17L20	D6RJB6	530 aa		13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	GLRX3	O76003	335 aa	Known RBP	13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	MYCN	P04198	464 aa	Predicted RBP	13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	HLA-DOA	P06340	250 aa		13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	GNAI3	P08754	354 aa		13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	PPP4C	P60510	307 aa		13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	CCNA1	P78396	465 aa		13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	USP17L24	Q0WX57	530 aa		13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	MTX1	Q13505	466 aa		13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	SHH	Q15465	462 aa		13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	TTC39A	Q5SRH9	613 aa		13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	C9orf50	Q5SZB4	431 aa		13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	TRPV1	Q8NER1	839 aa		13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	MAFA	Q8NHW3	353 aa	Predicted RBP	13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	PRDM5	Q9NQX1	630 aa	Predicted RBP	13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	GINM1	Q9NU53	330 aa		13.87	□□□□□ -0.19
SF3B2-208	ENST00000529994	CDH23	Q9H251	3354 aa		13.86	□□□□□ -0.19
SF3B2-208	ENST00000529994	PNMA6E	A0A0J9YXQ4	647 aa		13.86	□□□□□ -0.19
SF3B2-208	ENST00000529994	DNM1L	O00429	736 aa		13.86	□□□□□ -0.19
SF3B2-208	ENST00000529994	CYP2E1	P05181	493 aa	Predicted RBP	13.86	□□□□□ -0.19
SF3B2-208	ENST00000529994	PTPRE	P23469	700 aa		13.86	□□□□□ -0.19
SF3B2-208	ENST00000529994	RAB3GAP1	Q15042	981 aa		13.86	□□□□□ -0.19
SF3B2-208	ENST00000529994	ACER1	Q8TDN7	264 aa		13.86	□□□□□ -0.19
SF3B2-208	ENST00000529994	LPAR1	Q92633	364 aa		13.86	□□□□□ -0.19
SF3B2-208	ENST00000529994	SEMA6B	Q9H3T3	888 aa		13.86	□□□□□ -0.19
SF3B2-208	ENST00000529994	BTBD7	Q9P203	1132 aa		13.86	□□□□□ -0.19
SF3B2-208	ENST00000529994	IVNS1ABP	Q9Y6Y0	642 aa		13.86	□□□□□ -0.19
SF3B2-208	ENST00000529994	IPO8	O15397	1037 aa	Known RBP	13.85	□□□□□ -0.19
SF3B2-208	ENST00000529994	MSC	O60682	206 aa		13.85	□□□□□ -0.19
SF3B2-208	ENST00000529994	TRIM27	P14373	513 aa		13.85	□□□□□ -0.19
SF3B2-208	ENST00000529994	VCAM1	P19320	739 aa		13.85	□□□□□ -0.19
SF3B2-208	ENST00000529994	CATSPERG	Q6ZRH7	1159 aa		13.85	□□□□□ -0.19
SF3B2-208	ENST00000529994	MYLIP	Q8WY64	445 aa		13.85	□□□□□ -0.19
SF3B2-208	ENST00000529994	BAD	Q92934	168 aa		13.85	□□□□□ -0.19
SF3B2-208	ENST00000529994	C12orf42	Q96LP6	360 aa		13.85	□□□□□ -0.19
SF3B2-208	ENST00000529994	DBNDD2	Q9BQY9	259 aa		13.85	□□□□□ -0.19
SF3B2-208	ENST00000529994	ZAP70	P43403	619 aa		13.84	□□□□□ -0.19
SF3B2-208	ENST00000529994	GRB14	Q14449	540 aa		13.84	□□□□□ -0.19
SF3B2-208	ENST00000529994	ATF7IP	Q6VMQ6	1270 aa		13.84	□□□□□ -0.19
SF3B2-208	ENST00000529994	SLC39A5	Q6ZMH5	540 aa		13.84	□□□□□ -0.19
SF3B2-208	ENST00000529994	MIGA1	Q8NAN2	632 aa		13.84	□□□□□ -0.19
SF3B2-208	ENST00000529994	PIH1D3	Q9NQM4	214 aa	Known RBP	13.84	□□□□□ -0.19
SF3B2-208	ENST00000529994	ZBED9	Q6R2W3	1325 aa		13.84	□□□□□ -0.19
SF3B2-208	ENST00000529994	SPDYE16	A6NNV3	312 aa	Predicted RBP	13.83	□□□□□ -0.2
SF3B2-208	ENST00000529994	KBTBD13	C9JR72	458 aa		13.83	□□□□□ -0.2
SF3B2-208	ENST00000529994	GNAI2	P04899	355 aa		13.83	□□□□□ -0.2
SF3B2-208	ENST00000529994	HOXC6	P09630	235 aa		13.83	□□□□□ -0.2
SF3B2-208	ENST00000529994	CYBA	P13498	195 aa		13.83	□□□□□ -0.2
SF3B2-208	ENST00000529994	CYP7A1	P22680	504 aa		13.83	□□□□□ -0.2
SF3B2-208	ENST00000529994	TRIM60	Q495X7	471 aa		13.83	□□□□□ -0.2
SF3B2-208	ENST00000529994	TNNI3K	Q59H18	835 aa		13.83	□□□□□ -0.2
SF3B2-208	ENST00000529994	CCDC158	Q5M9N0	1113 aa		13.83	□□□□□ -0.2
SF3B2-208	ENST00000529994	TATDN1	Q6P1N9	297 aa		13.83	□□□□□ -0.2
SF3B2-208	ENST00000529994	SH3RF1	Q7Z6J0	888 aa		13.83	□□□□□ -0.2
SF3B2-208	ENST00000529994	DPP9	Q86TI2	863 aa		13.83	□□□□□ -0.2
SF3B2-208	ENST00000529994	ARHGAP45	Q92619	1136 aa		13.83	□□□□□ -0.2
SF3B2-208	ENST00000529994	FERMT2	Q96AC1	680 aa		13.83	□□□□□ -0.2
SF3B2-208	ENST00000529994	TTYH1	Q9H313	450 aa	Predicted RBP	13.83	□□□□□ -0.2
SF3B2-208	ENST00000529994	RPAP3	Q9H6T3	665 aa	Predicted RBP	13.83	□□□□□ -0.2
SF3B2-208	ENST00000529994	FPGT-TNNI3K	V9GXZ4	949 aa		13.83	□□□□□ -0.2
SF3B2-208	ENST00000529994	TTC28	Q96AY4	2481 aa		13.83	□□□□□ -0.2
SF3B2-208	ENST00000529994	SMCHD1	A6NHR9	2005 aa		13.82	□□□□□ -0.2
SF3B2-208	ENST00000529994	IDH1	O75874	414 aa	Known RBP	13.82	□□□□□ -0.2
SF3B2-208	ENST00000529994	ADORA2A	P29274	412 aa		13.82	□□□□□ -0.2
SF3B2-208	ENST00000529994	USP5	P45974	858 aa		13.82	□□□□□ -0.2
SF3B2-208	ENST00000529994	USP14	P54578	494 aa		13.82	□□□□□ -0.2
SF3B2-208	ENST00000529994	OS9	Q13438	667 aa	Predicted RBP	13.82	□□□□□ -0.2
SF3B2-208	ENST00000529994	ABCB5	Q2M3G0	1257 aa		13.82	□□□□□ -0.2
SF3B2-208	ENST00000529994	CERKL	Q49MI3	558 aa	Predicted RBP	13.82	□□□□□ -0.2
SF3B2-208	ENST00000529994	PRAMEF19	Q5SWL8	479 aa		13.82	□□□□□ -0.2
SF3B2-208	ENST00000529994	ZKSCAN2	Q63HK3	967 aa		13.82	□□□□□ -0.2
SF3B2-208	ENST00000529994	ARRDC4	Q8NCT1	418 aa		13.82	□□□□□ -0.2
SF3B2-208	ENST00000529994	KIAA1683	Q9H0B3	1180 aa		13.82	□□□□□ -0.2
SF3B2-208	ENST00000529994	SERPINB13	Q9UIV8	391 aa		13.82	□□□□□ -0.2
SF3B2-208	ENST00000529994	TRIM43B	A6NCK2	446 aa		13.81	□□□□□ -0.2
SF3B2-208	ENST00000529994	FOSL2	P15408	326 aa		13.81	□□□□□ -0.2
SF3B2-208	ENST00000529994	ADCYAP1R1	P41586	468 aa		13.81	□□□□□ -0.2
SF3B2-208	ENST00000529994	LBX2	Q6XYB7	198 aa		13.81	□□□□□ -0.2
SF3B2-208	ENST00000529994	FTSJ3	Q8IY81	847 aa	Known RBP	13.81	□□□□□ -0.2
SF3B2-208	ENST00000529994	TMEM57	Q8N5G2	664 aa		13.81	□□□□□ -0.2
SF3B2-208	ENST00000529994	TRIM43	Q96BQ3	446 aa	Predicted RBP	13.81	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms