RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 IRF6O14896 467 aa16.59■□□□□ 0.25
USF1-209ENST00000529476 SLC27A2O14975 620 aa16.59■□□□□ 0.25
USF1-209ENST00000529476 PPATQ06203 517 aa16.59■□□□□ 0.25
USF1-209ENST00000529476 PPIL2Q13356 520 aa16.59■□□□□ 0.25
USF1-209ENST00000529476 CREB3L3Q68CJ9 461 aa16.59■□□□□ 0.25
USF1-209ENST00000529476 TMEM179Q6ZVK1 233 aa16.59■□□□□ 0.25
USF1-209ENST00000529476 CLEC10AQ8IUN9 316 aa16.59■□□□□ 0.25
USF1-209ENST00000529476 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.59■□□□□ 0.25
USF1-209ENST00000529476 RANBP6O60518 1105 aaKnown RBP16.58■□□□□ 0.24
USF1-209ENST00000529476 ZBTB48P10074 688 aaPredicted RBP16.58■□□□□ 0.24
USF1-209ENST00000529476 PCP11498 1178 aaKnown RBP16.58■□□□□ 0.24
USF1-209ENST00000529476 TFAP4Q01664 338 aa16.58■□□□□ 0.24
USF1-209ENST00000529476 STOX1Q6ZVD7 989 aa16.58■□□□□ 0.24
USF1-209ENST00000529476 RNF186Q9NXI6 227 aa16.58■□□□□ 0.24
USF1-209ENST00000529476 SAGE1Q9NXZ1 904 aa16.58■□□□□ 0.24
USF1-209ENST00000529476 AFG3L2Q9Y4W6 797 aa16.58■□□□□ 0.24
USF1-209ENST00000529476 PTPRFP10586 1907 aa16.58■□□□□ 0.24
USF1-209ENST00000529476 TRIM75PA6NK02 468 aa16.57■□□□□ 0.24
USF1-209ENST00000529476 TRPA1O75762 1119 aa16.57■□□□□ 0.24
USF1-209ENST00000529476 SEC24BO95487 1268 aa16.57■□□□□ 0.24
USF1-209ENST00000529476 TSPY3P0CV98 308 aa16.57■□□□□ 0.24
USF1-209ENST00000529476 TSPY8P0CW00 308 aa16.57■□□□□ 0.24
USF1-209ENST00000529476 KIF23Q02241 960 aaPredicted RBP16.57■□□□□ 0.24
USF1-209ENST00000529476 SPP2Q13103 211 aa16.57■□□□□ 0.24
USF1-209ENST00000529476 NEDD1Q8NHV4 660 aa16.57■□□□□ 0.24
USF1-209ENST00000529476 USP26Q9BXU7 913 aa16.57■□□□□ 0.24
USF1-209ENST00000529476 PLIN4Q96Q06 1357 aa16.56■□□□□ 0.24
USF1-209ENST00000529476 TSPY2A6NKD2 308 aa16.56■□□□□ 0.24
USF1-209ENST00000529476 B4E1Z4 1266 aa16.56■□□□□ 0.24
USF1-209ENST00000529476 E7EWF7 191 aa16.56■□□□□ 0.24
USF1-209ENST00000529476 HSPA4P34932 840 aa16.56■□□□□ 0.24
USF1-209ENST00000529476 RASEFQ8IZ41 740 aa16.56■□□□□ 0.24
USF1-209ENST00000529476 ZNF280CQ8ND82 737 aa16.56■□□□□ 0.24
USF1-209ENST00000529476 ACER1Q8TDN7 264 aa16.56■□□□□ 0.24
USF1-209ENST00000529476 WDR18Q9BV38 432 aa16.56■□□□□ 0.24
USF1-209ENST00000529476 AS3MTQ9HBK9 375 aa16.56■□□□□ 0.24
USF1-209ENST00000529476 KCNH4Q9UQ05 1017 aa16.56■□□□□ 0.24
USF1-209ENST00000529476 MYH4Q9Y623 1939 aa16.55■□□□□ 0.24
USF1-209ENST00000529476 IGKV6D-41A0A0C4DH26 115 aa16.55■□□□□ 0.24
USF1-209ENST00000529476 NMT2O60551 498 aa16.55■□□□□ 0.24
USF1-209ENST00000529476 KDM4AO75164 1064 aa16.55■□□□□ 0.24
USF1-209ENST00000529476 ICA1Q05084 483 aa16.55■□□□□ 0.24
USF1-209ENST00000529476 RNF20Q5VTR2 975 aa16.55■□□□□ 0.24
USF1-209ENST00000529476 SIAH1Q8IUQ4 282 aa16.55■□□□□ 0.24
USF1-209ENST00000529476 ESR2Q92731 530 aa16.55■□□□□ 0.24
USF1-209ENST00000529476 CEP95Q96GE4 821 aa16.55■□□□□ 0.24
USF1-209ENST00000529476 MS4A4AQ96JQ5 239 aa16.55■□□□□ 0.24
USF1-209ENST00000529476 TBC1D2Q9BYX2 928 aa16.55■□□□□ 0.24
USF1-209ENST00000529476 KRT23Q9C075 422 aa16.55■□□□□ 0.24
USF1-209ENST00000529476 CNNM2Q9H8M5 875 aa16.55■□□□□ 0.24
USF1-209ENST00000529476 KANSL2Q9H9L4 492 aa16.55■□□□□ 0.24
USF1-209ENST00000529476 A0A1W2PRG0 241 aa16.54■□□□□ 0.24
USF1-209ENST00000529476 CXCL11O14625 94 aa16.54■□□□□ 0.24
USF1-209ENST00000529476 EPB41L2O43491 1005 aaKnown RBP16.54■□□□□ 0.24
USF1-209ENST00000529476 EEF2P13639 858 aaKnown RBP16.54■□□□□ 0.24
USF1-209ENST00000529476 GTF2A2P52657 109 aa16.54■□□□□ 0.24
USF1-209ENST00000529476 ATP2B2Q01814 1243 aa16.54■□□□□ 0.24
USF1-209ENST00000529476 SNAPC2Q13487 334 aa16.54■□□□□ 0.24
USF1-209ENST00000529476 MTMR2Q13614 643 aa16.54■□□□□ 0.24
USF1-209ENST00000529476 CTU1Q7Z7A3 348 aaKnown RBP16.54■□□□□ 0.24
USF1-209ENST00000529476 IL17RBQ9NRM6 502 aa16.54■□□□□ 0.24
USF1-209ENST00000529476 ZSWIM5Q9P217 1185 aa16.54■□□□□ 0.24
USF1-209ENST00000529476 CCL15-CCL14A0A0B4J2E2 113 aa16.53■□□□□ 0.24
USF1-209ENST00000529476 MANSC4A6NHS7 340 aaPredicted RBP16.53■□□□□ 0.24
USF1-209ENST00000529476 USP17L10C9JJH3 530 aa16.53■□□□□ 0.24
USF1-209ENST00000529476 BACE1P56817 501 aa16.53■□□□□ 0.24
USF1-209ENST00000529476 TRDNQ13061 729 aa16.53■□□□□ 0.24
USF1-209ENST00000529476 CCL15Q16663 113 aa16.53■□□□□ 0.24
USF1-209ENST00000529476 CYB5R4Q7L1T6 521 aa16.53■□□□□ 0.24
USF1-209ENST00000529476 NCOA7Q8NI08 942 aa16.53■□□□□ 0.24
USF1-209ENST00000529476 BRI3BPQ8WY22 251 aa16.53■□□□□ 0.24
USF1-209ENST00000529476 KCNB2Q92953 911 aa16.53■□□□□ 0.24
USF1-209ENST00000529476 FEZ1Q99689 392 aa16.53■□□□□ 0.24
USF1-209ENST00000529476 ZKSCAN3Q9BRR0 538 aa16.53■□□□□ 0.24
USF1-209ENST00000529476 MTMR4Q9NYA4 1195 aa16.53■□□□□ 0.24
USF1-209ENST00000529476 HPS5Q9UPZ3 1129 aa16.53■□□□□ 0.24
USF1-209ENST00000529476 LOC285556D6RIA3 1793 aa16.53■□□□□ 0.24
USF1-209ENST00000529476 A0A0G2JLL6 359 aaPredicted RBP16.52■□□□□ 0.24
USF1-209ENST00000529476 EIF5BO60841 1220 aaKnown RBP16.52■□□□□ 0.24
USF1-209ENST00000529476 CETPP11597 493 aa16.52■□□□□ 0.24
USF1-209ENST00000529476 ZKSCAN1P17029 563 aaPredicted RBP16.52■□□□□ 0.24
USF1-209ENST00000529476 HMGCS2P54868 508 aa16.52■□□□□ 0.24
USF1-209ENST00000529476 MOGSQ13724 837 aa16.52■□□□□ 0.24
USF1-209ENST00000529476 COL9A3Q14050 684 aaPredicted RBP16.52■□□□□ 0.24
USF1-209ENST00000529476 ZYXQ15942 572 aaKnown RBP16.52■□□□□ 0.24
USF1-209ENST00000529476 TSGA10IPQ3SY00 556 aa16.52■□□□□ 0.24
USF1-209ENST00000529476 PRRT2Q7Z6L0 340 aaPredicted RBP16.52■□□□□ 0.24
USF1-209ENST00000529476 RALYLQ86SE5 291 aaKnown RBP16.52■□□□□ 0.24
USF1-209ENST00000529476 ARHGEF10LQ9HCE6 1279 aa16.52■□□□□ 0.24
USF1-209ENST00000529476 NYAP2Q9P242 653 aa16.52■□□□□ 0.24
USF1-209ENST00000529476 CLIP2Q9UDT6 1046 aa16.52■□□□□ 0.24
USF1-209ENST00000529476 SNX14Q9Y5W7 946 aa16.52■□□□□ 0.24
USF1-209ENST00000529476 TESPA1A2RU30 521 aaPredicted RBP16.51■□□□□ 0.23
USF1-209ENST00000529476 NT5C2P49902 561 aa16.51■□□□□ 0.23
USF1-209ENST00000529476 ADCK5Q3MIX3 580 aa16.51■□□□□ 0.23
USF1-209ENST00000529476 SH3D19Q5HYK7 790 aa16.51■□□□□ 0.23
USF1-209ENST00000529476 GADL1Q6ZQY3 521 aa16.51■□□□□ 0.23
USF1-209ENST00000529476 CHST3Q7LGC8 479 aa16.51■□□□□ 0.23
USF1-209ENST00000529476 MB21D2Q8IYB1 491 aaPredicted RBP16.51■□□□□ 0.23
USF1-209ENST00000529476 PTPN18Q99952 460 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms