RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 TTLL6Q8N841 843 aa23.96■■□□□ 1.43
VPS28-209ENST00000528142 NUP62CLQ9H1M0 184 aa23.96■■□□□ 1.43
VPS28-209ENST00000528142 PCDHA7Q9UN72 937 aa23.96■■□□□ 1.43
VPS28-209ENST00000528142 KCNJ14Q9UNX9 436 aa23.96■■□□□ 1.43
VPS28-209ENST00000528142 BRCA1P38398 1863 aaKnown RBP23.96■■□□□ 1.43
VPS28-209ENST00000528142 CRKP46108 304 aa23.96■■□□□ 1.43
VPS28-209ENST00000528142 AKAP17AQ02040 695 aaKnown RBP23.96■■□□□ 1.43
VPS28-209ENST00000528142 NEDD1Q8NHV4 660 aa23.96■■□□□ 1.43
VPS28-209ENST00000528142 KCNG4Q8TDN1 519 aa23.96■■□□□ 1.43
VPS28-209ENST00000528142 SHISA4Q96DD7 197 aa23.96■■□□□ 1.43
VPS28-209ENST00000528142 ZDHHC15Q96MV8 337 aa23.96■■□□□ 1.43
VPS28-209ENST00000528142 TAOK2Q9UL54 1235 aa23.96■■□□□ 1.43
VPS28-209ENST00000528142 V9GY48 417 aaPredicted RBP23.96■■□□□ 1.43
VPS28-209ENST00000528142 BTBD18B2RXH4 712 aa23.95■■□□□ 1.42
VPS28-209ENST00000528142 ME1P48163 572 aa23.95■■□□□ 1.42
VPS28-209ENST00000528142 TGFB2P61812 414 aa23.95■■□□□ 1.42
VPS28-209ENST00000528142 GABPAQ06546 454 aa23.95■■□□□ 1.42
VPS28-209ENST00000528142 PICALMQ13492 652 aa23.95■■□□□ 1.42
VPS28-209ENST00000528142 GNL2Q13823 731 aaKnown RBP23.95■■□□□ 1.42
VPS28-209ENST00000528142 STK38Q15208 465 aa23.95■■□□□ 1.42
VPS28-209ENST00000528142 CCAR1Q8IX12 1150 aaKnown RBP23.95■■□□□ 1.42
VPS28-209ENST00000528142 PNMA1Q8ND90 353 aa23.95■■□□□ 1.42
VPS28-209ENST00000528142 FOXP1Q9H334 677 aaPredicted RBP23.95■■□□□ 1.42
VPS28-209ENST00000528142 CLSTN2Q9H4D0 955 aa23.95■■□□□ 1.42
VPS28-209ENST00000528142 CNTNAP5Q8WYK1 1306 aa23.95■■□□□ 1.42
VPS28-209ENST00000528142 FOCADQ5VW36 1801 aa23.95■■□□□ 1.42
VPS28-209ENST00000528142 HDLBPQ00341 1268 aaKnown RBP23.94■■□□□ 1.42
VPS28-209ENST00000528142 SAFBQ15424 915 aaKnown RBP eCLIP23.94■■□□□ 1.42
VPS28-209ENST00000528142 GRIPAP1Q4V328 841 aa23.94■■□□□ 1.42
VPS28-209ENST00000528142 ADALQ6DHV7 355 aa23.94■■□□□ 1.42
VPS28-209ENST00000528142 NOSTRINQ8IVI9 506 aa23.94■■□□□ 1.42
VPS28-209ENST00000528142 DIS3L2Q8IYB7 885 aaKnown RBP23.94■■□□□ 1.42
VPS28-209ENST00000528142 GOLPH3LQ9H4A5 285 aa23.94■■□□□ 1.42
VPS28-209ENST00000528142 A0A1W2PQ27 194 aa23.94■■□□□ 1.42
VPS28-209ENST00000528142 A0A1W2PQ64 194 aa23.94■■□□□ 1.42
VPS28-209ENST00000528142 A0A1W2PQD8 194 aa23.94■■□□□ 1.42
VPS28-209ENST00000528142 SPTLC2O15270 562 aa23.94■■□□□ 1.42
VPS28-209ENST00000528142 SLC39A14Q15043 492 aa23.94■■□□□ 1.42
VPS28-209ENST00000528142 KIF5BP33176 963 aa23.93■■□□□ 1.42
VPS28-209ENST00000528142 NOVP48745 357 aa23.93■■□□□ 1.42
VPS28-209ENST00000528142 RBM43Q6ZSC3 357 aaKnown RBP23.93■■□□□ 1.42
VPS28-209ENST00000528142 KIAA0825Q8IV33 1275 aa23.93■■□□□ 1.42
VPS28-209ENST00000528142 TMEM47Q9BQJ4 181 aa23.93■■□□□ 1.42
VPS28-209ENST00000528142 PPP1R1BQ9UD71 204 aaPredicted RBP23.93■■□□□ 1.42
VPS28-209ENST00000528142 GRM4Q14833 912 aa23.92■■□□□ 1.42
VPS28-209ENST00000528142 ENGASEQ8NFI3 743 aa23.92■■□□□ 1.42
VPS28-209ENST00000528142 OSBPL5Q9H0X9 879 aaPredicted RBP23.92■■□□□ 1.42
VPS28-209ENST00000528142 SCN9AQ15858 1988 aa23.92■■□□□ 1.42
VPS28-209ENST00000528142 hCG_1642624A0A1W2PR95 340 aa23.91■■□□□ 1.42
VPS28-209ENST00000528142 SNW1Q13573 536 aaKnown RBP23.91■■□□□ 1.42
VPS28-209ENST00000528142 PTPAQ15257 358 aa23.91■■□□□ 1.42
VPS28-209ENST00000528142 SF3A1Q15459 793 aaKnown RBP23.91■■□□□ 1.42
VPS28-209ENST00000528142 CAMK4Q16566 473 aa23.91■■□□□ 1.42
VPS28-209ENST00000528142 MAP3K11Q16584 847 aa23.91■■□□□ 1.42
VPS28-209ENST00000528142 PHF20Q9BVI0 1012 aa23.91■■□□□ 1.42
VPS28-209ENST00000528142 ZNF646O15015 1829 aaPredicted RBP23.91■■□□□ 1.42
VPS28-209ENST00000528142 MYH1P12882 1939 aa23.91■■□□□ 1.42
VPS28-209ENST00000528142 YDJCA8MPS7 323 aa23.91■■□□□ 1.42
VPS28-209ENST00000528142 PPIP5K2O43314 1243 aa23.91■■□□□ 1.42
VPS28-209ENST00000528142 XBP1P17861 261 aa23.91■■□□□ 1.42
VPS28-209ENST00000528142 CCDC93Q567U6 631 aa23.91■■□□□ 1.42
VPS28-209ENST00000528142 RTKN2Q8IZC4 609 aa23.91■■□□□ 1.42
VPS28-209ENST00000528142 TNMDQ9H2S6 317 aa23.91■■□□□ 1.42
VPS28-209ENST00000528142 VPS54Q9P1Q0 977 aa23.91■■□□□ 1.42
VPS28-209ENST00000528142 AXDND1Q5T1B0 1012 aaPredicted RBP23.9■■□□□ 1.42
VPS28-209ENST00000528142 RNF214Q8ND24 703 aa23.9■■□□□ 1.42
VPS28-209ENST00000528142 PSMD1Q99460 953 aa23.9■■□□□ 1.42
VPS28-209ENST00000528142 PCDHAC2Q9Y5I4 1007 aa23.9■■□□□ 1.42
VPS28-209ENST00000528142 CD2APQ9Y5K6 639 aa23.9■■□□□ 1.42
VPS28-209ENST00000528142 ADAMTSL1Q8N6G6 1762 aa23.9■■□□□ 1.42
VPS28-209ENST00000528142 FAM160A1Q05DH4 1040 aa23.89■■□□□ 1.42
VPS28-209ENST00000528142 NFIAQ12857 509 aa23.89■■□□□ 1.42
VPS28-209ENST00000528142 FSIP1Q8NA03 581 aa23.89■■□□□ 1.42
VPS28-209ENST00000528142 NLGN2Q8NFZ4 835 aa23.89■■□□□ 1.42
VPS28-209ENST00000528142 OXER1Q8TDS5 423 aa23.89■■□□□ 1.42
VPS28-209ENST00000528142 PIM2Q9P1W9 311 aa23.89■■□□□ 1.42
VPS28-209ENST00000528142 MAD2L2Q9UI95 211 aa23.89■■□□□ 1.42
VPS28-209ENST00000528142 SERPINA10Q9UK55 444 aa23.89■■□□□ 1.42
VPS28-209ENST00000528142 STX8Q9UNK0 236 aa23.89■■□□□ 1.42
VPS28-209ENST00000528142 PLIN4Q96Q06 1357 aa23.89■■□□□ 1.42
VPS28-209ENST00000528142 TOB1P50616 345 aaPredicted RBP23.89■■□□□ 1.41
VPS28-209ENST00000528142 NR5A1Q13285 461 aa23.89■■□□□ 1.41
VPS28-209ENST00000528142 CCDC73Q6ZRK6 1079 aa23.89■■□□□ 1.41
VPS28-209ENST00000528142 STAG2Q8N3U4 1231 aa23.89■■□□□ 1.41
VPS28-209ENST00000528142 MRPS27Q92552 414 aaKnown RBP23.89■■□□□ 1.41
VPS28-209ENST00000528142 PPP6R2O75170 966 aa23.88■■□□□ 1.41
VPS28-209ENST00000528142 GNAQP50148 359 aa23.88■■□□□ 1.41
VPS28-209ENST00000528142 CEP95Q96GE4 821 aa23.88■■□□□ 1.41
VPS28-209ENST00000528142 SERPINB13Q9UIV8 391 aa23.88■■□□□ 1.41
VPS28-209ENST00000528142 PALM3A6NDB9 673 aaPredicted RBP23.87■■□□□ 1.41
VPS28-209ENST00000528142 SCG2P13521 617 aa23.87■■□□□ 1.41
VPS28-209ENST00000528142 NPY5RQ15761 445 aa23.87■■□□□ 1.41
VPS28-209ENST00000528142 PFKFB3Q16875 520 aaPredicted RBP23.87■■□□□ 1.41
VPS28-209ENST00000528142 PPP1R9BQ96SB3 815 aa23.87■■□□□ 1.41
VPS28-209ENST00000528142 IDI2Q9BXS1 227 aa23.87■■□□□ 1.41
VPS28-209ENST00000528142 EIF4ENIF1Q9NRA8 985 aaKnown RBP23.87■■□□□ 1.41
VPS28-209ENST00000528142 SWAP70Q9UH65 585 aa23.87■■□□□ 1.41
VPS28-209ENST00000528142 COL4A5P29400 1685 aa23.87■■□□□ 1.41
VPS28-209ENST00000528142 MYO3BQ8WXR4 1341 aa23.87■■□□□ 1.41
VPS28-209ENST00000528142 CCDC192P0DO97 292 aa23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms