RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 APBA2Q99767 749 aa28.72■■■□□ 2.19
CPSF1-202ENST00000527827 RABGAP1Q9Y3P9 1069 aa28.72■■■□□ 2.19
CPSF1-202ENST00000527827 USP17L15C9J2P7 530 aa28.71■■■□□ 2.19
CPSF1-202ENST00000527827 USP17L13C9JLJ4 530 aa28.71■■■□□ 2.19
CPSF1-202ENST00000527827 USP17L11C9JVI0 530 aa28.71■■■□□ 2.19
CPSF1-202ENST00000527827 USP17L18D6R9N7 530 aa28.71■■■□□ 2.19
CPSF1-202ENST00000527827 USP17L22D6RA61 530 aa28.71■■■□□ 2.19
CPSF1-202ENST00000527827 USP17L17D6RBQ6 530 aa28.71■■■□□ 2.19
CPSF1-202ENST00000527827 USP17L19D6RCP7 530 aa28.71■■■□□ 2.19
CPSF1-202ENST00000527827 USP17L20D6RJB6 530 aa28.71■■■□□ 2.19
CPSF1-202ENST00000527827 USP17L24Q0WX57 530 aa28.71■■■□□ 2.19
CPSF1-202ENST00000527827 MAP3K12Q12852 859 aa28.71■■■□□ 2.19
CPSF1-202ENST00000527827 LHX8Q68G74 356 aa28.71■■■□□ 2.19
CPSF1-202ENST00000527827 FEZ1Q99689 392 aa28.71■■■□□ 2.19
CPSF1-202ENST00000527827 KIAA1683Q9H0B3 1180 aa28.71■■■□□ 2.19
CPSF1-202ENST00000527827 COL6A1P12109 1028 aa28.7■■■□□ 2.18
CPSF1-202ENST00000527827 RAB3GAP1Q15042 981 aa28.7■■■□□ 2.18
CPSF1-202ENST00000527827 CERKLQ49MI3 558 aaPredicted RBP28.7■■■□□ 2.18
CPSF1-202ENST00000527827 CATSPERGQ6ZRH7 1159 aa28.7■■■□□ 2.18
CPSF1-202ENST00000527827 TTC6Q86TZ1 520 aa28.7■■■□□ 2.18
CPSF1-202ENST00000527827 ACER1Q8TDN7 264 aa28.7■■■□□ 2.18
CPSF1-202ENST00000527827 RIOK1Q9BRS2 568 aaKnown RBP28.7■■■□□ 2.18
CPSF1-202ENST00000527827 EXOC6BQ9Y2D4 811 aa28.7■■■□□ 2.18
CPSF1-202ENST00000527827 FRMPD3Q5JV73 1810 aa28.7■■■□□ 2.18
CPSF1-202ENST00000527827 USP14P54578 494 aa28.69■■■□□ 2.18
CPSF1-202ENST00000527827 ABCB5Q2M3G0 1257 aa28.69■■■□□ 2.18
CPSF1-202ENST00000527827 TMED8Q6PL24 325 aaPredicted RBP28.69■■■□□ 2.18
CPSF1-202ENST00000527827 NAV1Q8NEY1 1877 aa28.68■■■□□ 2.18
CPSF1-202ENST00000527827 VCAM1P19320 739 aa28.68■■■□□ 2.18
CPSF1-202ENST00000527827 SHMT1P34896 483 aa28.68■■■□□ 2.18
CPSF1-202ENST00000527827 MAGEA10P43363 369 aaPredicted RBP28.68■■■□□ 2.18
CPSF1-202ENST00000527827 PLCD1P51178 756 aa28.68■■■□□ 2.18
CPSF1-202ENST00000527827 MAP2K5Q13163 448 aa28.68■■■□□ 2.18
CPSF1-202ENST00000527827 AACSQ86V21 672 aa28.68■■■□□ 2.18
CPSF1-202ENST00000527827 GUCY1A2P33402 732 aa28.67■■■□□ 2.18
CPSF1-202ENST00000527827 LBX2Q6XYB7 198 aa28.67■■■□□ 2.18
CPSF1-202ENST00000527827 CCNA1P78396 465 aa28.66■■■□□ 2.18
CPSF1-202ENST00000527827 ERC1Q8IUD2 1116 aa28.66■■■□□ 2.18
CPSF1-202ENST00000527827 EDC3Q96F86 508 aaKnown RBP28.66■■■□□ 2.18
CPSF1-202ENST00000527827 CWC22Q9HCG8 908 aaKnown RBP28.66■■■□□ 2.18
CPSF1-202ENST00000527827 FLRT1Q9NZU1 646 aa28.66■■■□□ 2.18
CPSF1-202ENST00000527827 BTBD7Q9P203 1132 aa28.66■■■□□ 2.18
CPSF1-202ENST00000527827 PTPREP23469 700 aa28.65■■■□□ 2.18
CPSF1-202ENST00000527827 HNRNPUQ00839 825 aaKnown RBP eCLIP28.65■■■□□ 2.18
CPSF1-202ENST00000527827 CABP5Q9NP86 173 aa28.65■■■□□ 2.18
CPSF1-202ENST00000527827 COL6A3P12111 3177 aa28.64■■■□□ 2.18
CPSF1-202ENST00000527827 SLC15A5A6NIM6 579 aa28.64■■■□□ 2.18
CPSF1-202ENST00000527827 GLRX3O76003 335 aaKnown RBP28.64■■■□□ 2.18
CPSF1-202ENST00000527827 EVX2Q03828 476 aa28.64■■■□□ 2.18
CPSF1-202ENST00000527827 GABPAQ06546 454 aa28.64■■■□□ 2.18
CPSF1-202ENST00000527827 IL1RAPL2Q9NP60 686 aa28.64■■■□□ 2.18
CPSF1-202ENST00000527827 MAGEB6P1A0A0J9YX57 407 aa28.63■■■□□ 2.17
CPSF1-202ENST00000527827 SPDYE16A6NNV3 312 aaPredicted RBP28.63■■■□□ 2.17
CPSF1-202ENST00000527827 LRRC26Q2I0M4 334 aa28.63■■■□□ 2.17
CPSF1-202ENST00000527827 WDR78Q5VTH9 848 aa28.63■■■□□ 2.17
CPSF1-202ENST00000527827 RPAP3Q9H6T3 665 aaPredicted RBP28.63■■■□□ 2.17
CPSF1-202ENST00000527827 POLR3DP05423 398 aaPredicted RBP28.62■■■□□ 2.17
CPSF1-202ENST00000527827 PDE6AP16499 860 aa28.62■■■□□ 2.17
CPSF1-202ENST00000527827 SEPT2Q15019 361 aa28.62■■■□□ 2.17
CPSF1-202ENST00000527827 LRIT3Q3SXY7 679 aa28.62■■■□□ 2.17
CPSF1-202ENST00000527827 GPR153Q6NV75 609 aa28.62■■■□□ 2.17
CPSF1-202ENST00000527827 PANK1Q8TE04 598 aa28.62■■■□□ 2.17
CPSF1-202ENST00000527827 HOXC6P09630 235 aa28.61■■■□□ 2.17
CPSF1-202ENST00000527827 GRB14Q14449 540 aa28.61■■■□□ 2.17
CPSF1-202ENST00000527827 TTF1Q15361 905 aaPredicted RBP28.61■■■□□ 2.17
CPSF1-202ENST00000527827 MFSD14CQ5VZR4 134 aa28.61■■■□□ 2.17
CPSF1-202ENST00000527827 TDHQ8IZJ6 230 aa28.61■■■□□ 2.17
CPSF1-202ENST00000527827 RHPN1Q8TCX5 695 aa28.61■■■□□ 2.17
CPSF1-202ENST00000527827 RLFQ13129 1914 aa28.61■■■□□ 2.17
CPSF1-202ENST00000527827 A0A1W2PRG0 241 aa28.6■■■□□ 2.17
CPSF1-202ENST00000527827 SLC9C2Q5TAH2 1124 aa28.6■■■□□ 2.17
CPSF1-202ENST00000527827 SLC17A8Q8NDX2 589 aa28.6■■■□□ 2.17
CPSF1-202ENST00000527827 NPLOC4Q8TAT6 608 aa28.6■■■□□ 2.17
CPSF1-202ENST00000527827 CRNKL1Q9BZJ0 848 aaKnown RBP28.6■■■□□ 2.17
CPSF1-202ENST00000527827 UBE2OQ9C0C9 1292 aaKnown RBP28.59■■■□□ 2.17
CPSF1-202ENST00000527827 MCM9Q9NXL9 1143 aa28.59■■■□□ 2.17
CPSF1-202ENST00000527827 IVNS1ABPQ9Y6Y0 642 aa28.59■■■□□ 2.17
CPSF1-202ENST00000527827 TCRBV5S4A2TA0A5A2 114 aa28.58■■■□□ 2.17
CPSF1-202ENST00000527827 IGHA2P01877 340 aa28.58■■■□□ 2.17
CPSF1-202ENST00000527827 HSP90AB4PQ58FF6 505 aa28.58■■■□□ 2.17
CPSF1-202ENST00000527827 ZNF532Q9HCE3 1301 aa28.58■■■□□ 2.17
CPSF1-202ENST00000527827 A0A0G2JMZ2 1700 aa28.57■■■□□ 2.16
CPSF1-202ENST00000527827 ATP2B2Q01814 1243 aa28.57■■■□□ 2.16
CPSF1-202ENST00000527827 DEFB123Q8N688 67 aa28.57■■■□□ 2.16
CPSF1-202ENST00000527827 PPIL4Q8WUA2 492 aaKnown RBP eCLIP28.57■■■□□ 2.16
CPSF1-202ENST00000527827 DDX20Q9UHI6 824 aaKnown RBP28.57■■■□□ 2.16
CPSF1-202ENST00000527827 ZNF236Q9UL36 1845 aa28.57■■■□□ 2.16
CPSF1-202ENST00000527827 MYH8P13535 1937 aa28.56■■■□□ 2.16
CPSF1-202ENST00000527827 CYP2C19P33261 490 aa28.56■■■□□ 2.16
CPSF1-202ENST00000527827 Q7L0L9 218 aa28.56■■■□□ 2.16
CPSF1-202ENST00000527827 LCORLQ8N3X6 602 aa28.56■■■□□ 2.16
CPSF1-202ENST00000527827 TRPV1Q8NER1 839 aa28.56■■■□□ 2.16
CPSF1-202ENST00000527827 SDR42E1Q8WUS8 393 aa28.56■■■□□ 2.16
CPSF1-202ENST00000527827 SENP6Q9GZR1 1112 aaPredicted RBP28.56■■■□□ 2.16
CPSF1-202ENST00000527827 DCP1AQ9NPI6 582 aaPredicted RBP28.56■■■□□ 2.16
CPSF1-202ENST00000527827 DNAH12Q6ZR08 3092 aa28.56■■■□□ 2.16
CPSF1-202ENST00000527827 GOLIM4O00461 696 aa28.55■■■□□ 2.16
CPSF1-202ENST00000527827 MPHOSPH10O00566 681 aaKnown RBP28.55■■■□□ 2.16
CPSF1-202ENST00000527827 CYP2D6P10635 497 aa28.55■■■□□ 2.16
CPSF1-202ENST00000527827 COG2Q14746 738 aa28.55■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms