RNA–Protein interactions for RNA: ENST00000527413.1

SSSCA1-204, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

TSL 2

Gene SSSCA1, Length 532 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-204ENST00000527413 RLFQ13129 1914 aa16.4■□□□□ 0.22
SSSCA1-204ENST00000527413 GREB1LQ9C091 1923 aaPredicted RBP16.4■□□□□ 0.22
SSSCA1-204ENST00000527413 MPHOSPH10O00566 681 aaKnown RBP16.39■□□□□ 0.21
SSSCA1-204ENST00000527413 INHAP05111 366 aa16.39■□□□□ 0.21
SSSCA1-204ENST00000527413 VCAM1P19320 739 aa16.39■□□□□ 0.21
SSSCA1-204ENST00000527413 SEPT2Q15019 361 aa16.39■□□□□ 0.21
SSSCA1-204ENST00000527413 KBTBD3Q8NAB2 608 aa16.39■□□□□ 0.21
SSSCA1-204ENST00000527413 SLC44A5Q8NCS7 719 aa16.39■□□□□ 0.21
SSSCA1-204ENST00000527413 GTF3C2Q8WUA4 911 aaPredicted RBP16.39■□□□□ 0.21
SSSCA1-204ENST00000527413 DYNLL2Q96FJ2 89 aa16.39■□□□□ 0.21
SSSCA1-204ENST00000527413 PUS7LQ9H0K6 701 aaKnown RBP16.39■□□□□ 0.21
SSSCA1-204ENST00000527413 RNF208Q9H0X6 261 aa16.39■□□□□ 0.21
SSSCA1-204ENST00000527413 TXNRD2Q9NNW7 524 aa16.39■□□□□ 0.21
SSSCA1-204ENST00000527413 PEX10O60683 326 aa16.38■□□□□ 0.21
SSSCA1-204ENST00000527413 GJB1P08034 283 aa16.38■□□□□ 0.21
SSSCA1-204ENST00000527413 AMOTL1Q8IY63 956 aa16.38■□□□□ 0.21
SSSCA1-204ENST00000527413 GPRC5AQ8NFJ5 357 aa16.38■□□□□ 0.21
SSSCA1-204ENST00000527413 NKX2-3Q8TAU0 364 aa16.38■□□□□ 0.21
SSSCA1-204ENST00000527413 DDRGK1Q96HY6 314 aa16.38■□□□□ 0.21
SSSCA1-204ENST00000527413 YTHDC1Q96MU7 727 aaKnown RBP16.38■□□□□ 0.21
SSSCA1-204ENST00000527413 UNC93B1Q9H1C4 597 aa16.38■□□□□ 0.21
SSSCA1-204ENST00000527413 SLC4A4Q9Y6R1 1079 aa16.38■□□□□ 0.21
SSSCA1-204ENST00000527413 CYP2D7A0A087X1C5 515 aa16.37■□□□□ 0.21
SSSCA1-204ENST00000527413 USP17L15C9J2P7 530 aa16.37■□□□□ 0.21
SSSCA1-204ENST00000527413 USP17L13C9JLJ4 530 aa16.37■□□□□ 0.21
SSSCA1-204ENST00000527413 USP17L11C9JVI0 530 aa16.37■□□□□ 0.21
SSSCA1-204ENST00000527413 USP17L18D6R9N7 530 aa16.37■□□□□ 0.21
SSSCA1-204ENST00000527413 USP17L22D6RA61 530 aa16.37■□□□□ 0.21
SSSCA1-204ENST00000527413 USP17L17D6RBQ6 530 aa16.37■□□□□ 0.21
SSSCA1-204ENST00000527413 USP17L19D6RCP7 530 aa16.37■□□□□ 0.21
SSSCA1-204ENST00000527413 USP17L20D6RJB6 530 aa16.37■□□□□ 0.21
SSSCA1-204ENST00000527413 GJA8P48165 433 aa16.37■□□□□ 0.21
SSSCA1-204ENST00000527413 ERVK-9P63128 1117 aa16.37■□□□□ 0.21
SSSCA1-204ENST00000527413 ERVK-24P63145 666 aa16.37■□□□□ 0.21
SSSCA1-204ENST00000527413 USP17L24Q0WX57 530 aa16.37■□□□□ 0.21
SSSCA1-204ENST00000527413 C12orf60Q5U649 245 aa16.37■□□□□ 0.21
SSSCA1-204ENST00000527413 TMEM179Q6ZVK1 233 aa16.37■□□□□ 0.21
SSSCA1-204ENST00000527413 CRBNQ96SW2 442 aa16.37■□□□□ 0.21
SSSCA1-204ENST00000527413 PAGR1Q9BTK6 254 aa16.37■□□□□ 0.21
SSSCA1-204ENST00000527413 RBPJLQ9UBG7 517 aa16.37■□□□□ 0.21
SSSCA1-204ENST00000527413 TTC41PQ6P2S7 1318 aa16.37■□□□□ 0.21
SSSCA1-204ENST00000527413 COL11A1P12107 1806 aaPredicted RBP16.36■□□□□ 0.21
SSSCA1-204ENST00000527413 USP17L12C9JPN9 530 aa16.36■□□□□ 0.21
SSSCA1-204ENST00000527413 USP17L21D6R901 530 aa16.36■□□□□ 0.21
SSSCA1-204ENST00000527413 SMIM22K7EJ46 135 aa16.36■□□□□ 0.21
SSSCA1-204ENST00000527413 POTEEQ6S8J3 1075 aa16.36■□□□□ 0.21
SSSCA1-204ENST00000527413 C16orf86Q6ZW13 317 aa16.36■□□□□ 0.21
SSSCA1-204ENST00000527413 GJD2Q9UKL4 321 aa16.36■□□□□ 0.21
SSSCA1-204ENST00000527413 FRMPD3Q5JV73 1810 aa16.35■□□□□ 0.21
SSSCA1-204ENST00000527413 MYH4Q9Y623 1939 aa16.35■□□□□ 0.21
SSSCA1-204ENST00000527413 A0A1W2PRG0 241 aa16.35■□□□□ 0.21
SSSCA1-204ENST00000527413 HMGCRP04035 888 aa16.35■□□□□ 0.21
SSSCA1-204ENST00000527413 AKR1B1P15121 316 aa16.35■□□□□ 0.21
SSSCA1-204ENST00000527413 MAPK4P31152 587 aa16.35■□□□□ 0.21
SSSCA1-204ENST00000527413 CATSPERGQ6ZRH7 1159 aa16.35■□□□□ 0.21
SSSCA1-204ENST00000527413 CLEC10AQ8IUN9 316 aa16.35■□□□□ 0.21
SSSCA1-204ENST00000527413 U2AF1L4Q8WU68 220 aaKnown RBP16.35■□□□□ 0.21
SSSCA1-204ENST00000527413 SOCS4Q8WXH5 440 aa16.35■□□□□ 0.21
SSSCA1-204ENST00000527413 APPBP2Q92624 585 aa16.35■□□□□ 0.21
SSSCA1-204ENST00000527413 PORCNQ9H237 461 aa16.35■□□□□ 0.21
SSSCA1-204ENST00000527413 RPAP3Q9H6T3 665 aaPredicted RBP16.35■□□□□ 0.21
SSSCA1-204ENST00000527413 ARPP21Q9UBL0 812 aaPredicted RBP16.35■□□□□ 0.21
SSSCA1-204ENST00000527413 ZNF236Q9UL36 1845 aa16.35■□□□□ 0.21
SSSCA1-204ENST00000527413 ERC2O15083 957 aa16.34■□□□□ 0.21
SSSCA1-204ENST00000527413 CNMDO75829 334 aa16.34■□□□□ 0.21
SSSCA1-204ENST00000527413 ZFYP08048 801 aaPredicted RBP16.34■□□□□ 0.21
SSSCA1-204ENST00000527413 CDK8P49336 464 aa16.34■□□□□ 0.21
SSSCA1-204ENST00000527413 Q3C1V9 767 aa16.34■□□□□ 0.21
SSSCA1-204ENST00000527413 CTR9Q6PD62 1173 aa16.34■□□□□ 0.21
SSSCA1-204ENST00000527413 LBX2Q6XYB7 198 aa16.34■□□□□ 0.21
SSSCA1-204ENST00000527413 PI4K2BQ8TCG2 481 aa16.34■□□□□ 0.21
SSSCA1-204ENST00000527413 OTUD7AQ8TE49 926 aaPredicted RBP16.34■□□□□ 0.21
SSSCA1-204ENST00000527413 OSBP2Q969R2 916 aa16.34■□□□□ 0.21
SSSCA1-204ENST00000527413 CCDC17Q96LX7 622 aa16.34■□□□□ 0.21
SSSCA1-204ENST00000527413 STRBPQ96SI9 672 aaKnown RBP16.34■□□□□ 0.21
SSSCA1-204ENST00000527413 RABGAP1Q9Y3P9 1069 aa16.34■□□□□ 0.21
SSSCA1-204ENST00000527413 ALPK3Q96L96 1907 aa16.33■□□□□ 0.21
SSSCA1-204ENST00000527413 SPDYE16A6NNV3 312 aaPredicted RBP16.33■□□□□ 0.2
SSSCA1-204ENST00000527413 RNF113AO15541 343 aaKnown RBP16.33■□□□□ 0.2
SSSCA1-204ENST00000527413 GLRX3O76003 335 aaKnown RBP16.33■□□□□ 0.2
SSSCA1-204ENST00000527413 ICA1Q05084 483 aa16.33■□□□□ 0.2
SSSCA1-204ENST00000527413 GPR142Q7Z601 462 aa16.33■□□□□ 0.2
SSSCA1-204ENST00000527413 CCAR1Q8IX12 1150 aaKnown RBP16.33■□□□□ 0.2
SSSCA1-204ENST00000527413 TRIB2Q92519 343 aa16.33■□□□□ 0.2
SSSCA1-204ENST00000527413 NUDT12Q9BQG2 462 aa16.33■□□□□ 0.2
SSSCA1-204ENST00000527413 ARHGEF10LQ9HCE6 1279 aa16.33■□□□□ 0.2
SSSCA1-204ENST00000527413 PAK6Q9NQU5 681 aaPredicted RBP16.33■□□□□ 0.2
SSSCA1-204ENST00000527413 ROBO3Q96MS0 1386 aa16.33■□□□□ 0.2
SSSCA1-204ENST00000527413 GSG1L2A8MUP6 293 aa16.32■□□□□ 0.2
SSSCA1-204ENST00000527413 GPAA1O43292 621 aa16.32■□□□□ 0.2
SSSCA1-204ENST00000527413 SGPL1O95470 568 aa16.32■□□□□ 0.2
SSSCA1-204ENST00000527413 MX1P20591 662 aa16.32■□□□□ 0.2
SSSCA1-204ENST00000527413 CYP2B6P20813 491 aa16.32■□□□□ 0.2
SSSCA1-204ENST00000527413 CCNA1P78396 465 aa16.32■□□□□ 0.2
SSSCA1-204ENST00000527413 UBE2Q1Q7Z7E8 422 aa16.32■□□□□ 0.2
SSSCA1-204ENST00000527413 DEFB118Q96PH6 123 aa16.32■□□□□ 0.2
SSSCA1-204ENST00000527413 SALL3Q9BXA9 1300 aa16.32■□□□□ 0.2
SSSCA1-204ENST00000527413 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.32■□□□□ 0.2
SSSCA1-204ENST00000527413 SH2D4AQ9H788 454 aa16.32■□□□□ 0.2
SSSCA1-204ENST00000527413 M0R2C6 588 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms