RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 SPATA32Q96LK8 384 aa7.83□□□□□ -1.16
CD44-223ENST00000526553 FBXL18Q96ME1 805 aa7.83□□□□□ -1.16
CD44-223ENST00000526553 VAV3Q9UKW4 847 aa7.83□□□□□ -1.16
CD44-223ENST00000526553 SLC22A31A6NKX4 558 aa7.82□□□□□ -1.16
CD44-223ENST00000526553 MEIS3P2A8K0S8 358 aa7.82□□□□□ -1.16
CD44-223ENST00000526553 TCF3P15923 654 aa7.82□□□□□ -1.16
CD44-223ENST00000526553 CLCN7P51798 805 aa7.82□□□□□ -1.16
CD44-223ENST00000526553 PRKCQQ04759 706 aa7.82□□□□□ -1.16
CD44-223ENST00000526553 RAD51AP2Q09MP3 1159 aa7.82□□□□□ -1.16
CD44-223ENST00000526553 PAK2Q13177 524 aa7.82□□□□□ -1.16
CD44-223ENST00000526553 COL9A2Q14055 689 aaPredicted RBP7.82□□□□□ -1.16
CD44-223ENST00000526553 NKPD1Q17RQ9 610 aa7.82□□□□□ -1.16
CD44-223ENST00000526553 XP32Q5T750 250 aa7.82□□□□□ -1.16
CD44-223ENST00000526553 NFXL1Q6ZNB6 911 aa7.82□□□□□ -1.16
CD44-223ENST00000526553 GK5Q6ZS86 529 aa7.82□□□□□ -1.16
CD44-223ENST00000526553 MFSD4AQ8N468 514 aa7.82□□□□□ -1.16
CD44-223ENST00000526553 BCL7CQ8WUZ0 217 aaPredicted RBP7.82□□□□□ -1.16
CD44-223ENST00000526553 HRASLS5Q96KN8 279 aa7.82□□□□□ -1.16
CD44-223ENST00000526553 CCDC74BQ96LY2 380 aa7.82□□□□□ -1.16
CD44-223ENST00000526553 SLC5A6Q9Y289 635 aa7.82□□□□□ -1.16
CD44-223ENST00000526553 CNTNAP4Q9C0A0 1308 aa7.81□□□□□ -1.16
CD44-223ENST00000526553 GP2P55259 537 aaKnown RBP7.81□□□□□ -1.16
CD44-223ENST00000526553 LRRFIP1Q32MZ4 808 aaKnown RBP7.81□□□□□ -1.16
CD44-223ENST00000526553 CDCP2Q5VXM1 449 aa7.81□□□□□ -1.16
CD44-223ENST00000526553 OVOS1Q6IE37 1185 aa7.81□□□□□ -1.16
CD44-223ENST00000526553 PHACTR4Q8IZ21 702 aa7.81□□□□□ -1.16
CD44-223ENST00000526553 RASGRP4Q8TDF6 673 aa7.81□□□□□ -1.16
CD44-223ENST00000526553 ZNRF3Q9ULT6 936 aa7.81□□□□□ -1.16
CD44-223ENST00000526553 CAPN6Q9Y6Q1 641 aa7.81□□□□□ -1.16
CD44-223ENST00000526553 PRR33A8MZF0 331 aa7.8□□□□□ -1.16
CD44-223ENST00000526553 IMPDH2P12268 514 aa7.8□□□□□ -1.16
CD44-223ENST00000526553 GJA8P48165 433 aa7.8□□□□□ -1.16
CD44-223ENST00000526553 ARSHQ5FYA8 562 aa7.8□□□□□ -1.16
CD44-223ENST00000526553 WFDC3Q8IUB2 231 aa7.8□□□□□ -1.16
CD44-223ENST00000526553 FLCNQ8NFG4 579 aa7.8□□□□□ -1.16
CD44-223ENST00000526553 TMEM40Q8WWA1 233 aa7.8□□□□□ -1.16
CD44-223ENST00000526553 GPRASP2Q96D09 838 aa7.8□□□□□ -1.16
CD44-223ENST00000526553 CNNM2Q9H8M5 875 aa7.8□□□□□ -1.16
CD44-223ENST00000526553 RGS13O14921 159 aa7.79□□□□□ -1.16
CD44-223ENST00000526553 RAG1P15918 1043 aa7.79□□□□□ -1.16
CD44-223ENST00000526553 PIWIL2Q8TC59 973 aaKnown RBP7.79□□□□□ -1.16
CD44-223ENST00000526553 RNF141Q8WVD5 230 aa7.79□□□□□ -1.16
CD44-223ENST00000526553 KIF2CQ99661 725 aa7.79□□□□□ -1.16
CD44-223ENST00000526553 CCSER2Q9H7U1 834 aa7.79□□□□□ -1.16
CD44-223ENST00000526553 PAK6Q9NQU5 681 aaPredicted RBP7.79□□□□□ -1.16
CD44-223ENST00000526553 FAM155AB1AL88 458 aaPredicted RBP7.78□□□□□ -1.16
CD44-223ENST00000526553 CBX7O95931 251 aa7.78□□□□□ -1.16
CD44-223ENST00000526553 TNNI2P48788 182 aa7.78□□□□□ -1.16
CD44-223ENST00000526553 AOC3Q16853 763 aa7.78□□□□□ -1.16
CD44-223ENST00000526553 NLRC3Q7RTR2 1065 aa7.78□□□□□ -1.16
CD44-223ENST00000526553 AGBL5Q8NDL9 886 aa7.78□□□□□ -1.16
CD44-223ENST00000526553 BAHD1Q8TBE0 780 aaPredicted RBP7.78□□□□□ -1.16
CD44-223ENST00000526553 ASB11Q8WXH4 323 aa7.78□□□□□ -1.16
CD44-223ENST00000526553 ATG4CQ96DT6 458 aa7.78□□□□□ -1.16
CD44-223ENST00000526553 FERD3LQ96RJ6 166 aa7.78□□□□□ -1.16
CD44-223ENST00000526553 COL17A1Q9UMD9 1497 aaPredicted RBP7.78□□□□□ -1.16
CD44-223ENST00000526553 PITPNM2Q9BZ72 1349 aa7.78□□□□□ -1.16
CD44-223ENST00000526553 TNFRSF10CO14798 259 aa7.77□□□□□ -1.17
CD44-223ENST00000526553 ERCC5P28715 1186 aaPredicted RBP7.77□□□□□ -1.17
CD44-223ENST00000526553 GBP1P32455 592 aa7.77□□□□□ -1.17
CD44-223ENST00000526553 CCNFP41002 786 aa7.77□□□□□ -1.17
CD44-223ENST00000526553 SOX9P48436 509 aa7.77□□□□□ -1.17
CD44-223ENST00000526553 ZNF574Q6ZN55 896 aaPredicted RBP7.77□□□□□ -1.17
CD44-223ENST00000526553 SPRED2Q7Z698 418 aa7.77□□□□□ -1.17
CD44-223ENST00000526553 THAP5Q7Z6K1 395 aa7.77□□□□□ -1.17
CD44-223ENST00000526553 KREMEN1Q96MU8 473 aa7.77□□□□□ -1.17
CD44-223ENST00000526553 ASPNQ9BXN1 380 aa7.77□□□□□ -1.17
CD44-223ENST00000526553 ST14Q9Y5Y6 855 aa7.77□□□□□ -1.17
CD44-223ENST00000526553 OAS3Q9Y6K5 1087 aaKnown RBP7.77□□□□□ -1.17
CD44-223ENST00000526553 E9PSI1 815 aa7.76□□□□□ -1.17
CD44-223ENST00000526553 UBOX5O94941 541 aa7.76□□□□□ -1.17
CD44-223ENST00000526553 NME1P15531 152 aaKnown RBP7.76□□□□□ -1.17
CD44-223ENST00000526553 TNK2Q07912 1038 aa7.76□□□□□ -1.17
CD44-223ENST00000526553 BNIP3Q12983 259 aa7.76□□□□□ -1.17
CD44-223ENST00000526553 TP53INP2Q8IXH6 220 aa7.76□□□□□ -1.17
CD44-223ENST00000526553 TAB3Q8N5C8 712 aaPredicted RBP7.76□□□□□ -1.17
CD44-223ENST00000526553 RBBP8NLQ8NC74 664 aaPredicted RBP7.76□□□□□ -1.17
CD44-223ENST00000526553 Q96M66 194 aa7.76□□□□□ -1.17
CD44-223ENST00000526553 ACBD3Q9H3P7 528 aa7.76□□□□□ -1.17
CD44-223ENST00000526553 ANTXR1Q9H6X2 564 aa7.76□□□□□ -1.17
CD44-223ENST00000526553 SEMA3GQ9NS98 782 aa7.76□□□□□ -1.17
CD44-223ENST00000526553 IGSF5Q9NSI5 407 aa7.76□□□□□ -1.17
CD44-223ENST00000526553 GINM1Q9NU53 330 aa7.76□□□□□ -1.17
CD44-223ENST00000526553 CD8BP10966 210 aa7.75□□□□□ -1.17
CD44-223ENST00000526553 ANGEL2Q5VTE6 544 aaKnown RBP7.75□□□□□ -1.17
CD44-223ENST00000526553 HSPA12BQ96MM6 686 aa7.75□□□□□ -1.17
CD44-223ENST00000526553 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.75□□□□□ -1.17
CD44-223ENST00000526553 KCNH3Q9ULD8 1083 aa7.75□□□□□ -1.17
CD44-223ENST00000526553 EFR3BQ9Y2G0 817 aa7.75□□□□□ -1.17
CD44-223ENST00000526553 INPP5FQ9Y2H2 1132 aa7.75□□□□□ -1.17
CD44-223ENST00000526553 FUT4P22083 530 aa7.74□□□□□ -1.17
CD44-223ENST00000526553 CHMP4BP1P59074 171 aa7.74□□□□□ -1.17
CD44-223ENST00000526553 RNF4P78317 190 aa7.74□□□□□ -1.17
CD44-223ENST00000526553 CDKAL1Q5VV42 579 aa7.74□□□□□ -1.17
CD44-223ENST00000526553 INTS3Q68E01 1043 aaKnown RBP7.74□□□□□ -1.17
CD44-223ENST00000526553 ABI1Q8IZP0 508 aa7.74□□□□□ -1.17
CD44-223ENST00000526553 DTWD2Q8NBA8 298 aa7.74□□□□□ -1.17
CD44-223ENST00000526553 VWCEQ96DN2 955 aa7.74□□□□□ -1.17
CD44-223ENST00000526553 PPT2Q9UMR5 302 aa7.74□□□□□ -1.17
CD44-223ENST00000526553 H3BS24 57 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms