RNA–Protein interactions for RNA: ENST00000521621.5

CLK4-209, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 2,780 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-209ENST00000521621 TCP11L1Q9NUJ3 509 aa11.28□□□□□ -0.6
CLK4-209ENST00000521621 TMX2Q9Y320 296 aa11.28□□□□□ -0.6
CLK4-209ENST00000521621 RLFQ13129 1914 aa11.28□□□□□ -0.6
CLK4-209ENST00000521621 TRIM6-TRIM34B2RNG4 842 aa11.28□□□□□ -0.6
CLK4-209ENST00000521621 NEFLP07196 543 aa11.28□□□□□ -0.6
CLK4-209ENST00000521621 HSPD1P10809 573 aaKnown RBP11.28□□□□□ -0.6
CLK4-209ENST00000521621 CAPN2P17655 700 aa11.28□□□□□ -0.6
CLK4-209ENST00000521621 RASA1P20936 1047 aa11.28□□□□□ -0.6
CLK4-209ENST00000521621 OSBPP22059 807 aa11.28□□□□□ -0.6
CLK4-209ENST00000521621 PDE4BQ07343 736 aa11.28□□□□□ -0.6
CLK4-209ENST00000521621 PPARAQ07869 468 aa11.28□□□□□ -0.6
CLK4-209ENST00000521621 ZNF296Q8WUU4 475 aaPredicted RBP11.28□□□□□ -0.6
CLK4-209ENST00000521621 NAPBQ9H115 298 aa11.28□□□□□ -0.6
CLK4-209ENST00000521621 TMOD4Q9NZQ9 345 aa11.28□□□□□ -0.6
CLK4-209ENST00000521621 TBC1D8O95759 1140 aa11.28□□□□□ -0.6
CLK4-209ENST00000521621 TDO2P48775 406 aa11.28□□□□□ -0.6
CLK4-209ENST00000521621 SPP2Q13103 211 aa11.28□□□□□ -0.6
CLK4-209ENST00000521621 EMILIN3Q9NT22 766 aa11.28□□□□□ -0.6
CLK4-209ENST00000521621 SP3Q02447 781 aa11.27□□□□□ -0.61
CLK4-209ENST00000521621 MKRN3Q13064 507 aaKnown RBP11.27□□□□□ -0.61
CLK4-209ENST00000521621 NEDD1Q8NHV4 660 aa11.27□□□□□ -0.61
CLK4-209ENST00000521621 FAM227BQ96M60 508 aa11.27□□□□□ -0.61
CLK4-209ENST00000521621 ARHGEF10LQ9HCE6 1279 aa11.27□□□□□ -0.61
CLK4-209ENST00000521621 DIAPH3Q9NSV4 1193 aa11.27□□□□□ -0.61
CLK4-209ENST00000521621 SLURP2P0DP57 97 aa11.27□□□□□ -0.61
CLK4-209ENST00000521621 CHMLP26374 656 aa11.27□□□□□ -0.61
CLK4-209ENST00000521621 SIAH1Q8IUQ4 282 aa11.27□□□□□ -0.61
CLK4-209ENST00000521621 RILPL2Q969X0 211 aa11.27□□□□□ -0.61
CLK4-209ENST00000521621 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.27□□□□□ -0.61
CLK4-209ENST00000521621 PPP4R2Q9NY27 417 aa11.27□□□□□ -0.61
CLK4-209ENST00000521621 CTNNA3Q9UI47 895 aa11.27□□□□□ -0.61
CLK4-209ENST00000521621 CASP8AP2Q9UKL3 1982 aa11.26□□□□□ -0.61
CLK4-209ENST00000521621 USP17L15C9J2P7 530 aa11.26□□□□□ -0.61
CLK4-209ENST00000521621 USP17L13C9JLJ4 530 aa11.26□□□□□ -0.61
CLK4-209ENST00000521621 USP17L11C9JVI0 530 aa11.26□□□□□ -0.61
CLK4-209ENST00000521621 USP17L18D6R9N7 530 aa11.26□□□□□ -0.61
CLK4-209ENST00000521621 USP17L22D6RA61 530 aa11.26□□□□□ -0.61
CLK4-209ENST00000521621 USP17L17D6RBQ6 530 aa11.26□□□□□ -0.61
CLK4-209ENST00000521621 USP17L19D6RCP7 530 aa11.26□□□□□ -0.61
CLK4-209ENST00000521621 USP17L20D6RJB6 530 aa11.26□□□□□ -0.61
CLK4-209ENST00000521621 GDF11O95390 407 aa11.26□□□□□ -0.61
CLK4-209ENST00000521621 USP17L24Q0WX57 530 aa11.26□□□□□ -0.61
CLK4-209ENST00000521621 STAG1Q8WVM7 1258 aa11.26□□□□□ -0.61
CLK4-209ENST00000521621 DYNLL2Q96FJ2 89 aa11.26□□□□□ -0.61
CLK4-209ENST00000521621 AKR1B1P15121 316 aa11.26□□□□□ -0.61
CLK4-209ENST00000521621 MTMR2Q13614 643 aa11.26□□□□□ -0.61
CLK4-209ENST00000521621 FAM110CQ1W6H9 321 aa11.26□□□□□ -0.61
CLK4-209ENST00000521621 COL13A1Q5TAT6 717 aaPredicted RBP11.26□□□□□ -0.61
CLK4-209ENST00000521621 CATSPERGQ6ZRH7 1159 aa11.26□□□□□ -0.61
CLK4-209ENST00000521621 GMCL1P1Q8NEA9 526 aa11.26□□□□□ -0.61
CLK4-209ENST00000521621 R3HDMLQ9H3Y0 253 aa11.26□□□□□ -0.61
CLK4-209ENST00000521621 TRIM75PA6NK02 468 aa11.25□□□□□ -0.61
CLK4-209ENST00000521621 EPB41L2O43491 1005 aaKnown RBP11.25□□□□□ -0.61
CLK4-209ENST00000521621 PLA2G6O60733 806 aa11.25□□□□□ -0.61
CLK4-209ENST00000521621 FGAP02671 866 aa11.25□□□□□ -0.61
CLK4-209ENST00000521621 SEPT2Q15019 361 aa11.25□□□□□ -0.61
CLK4-209ENST00000521621 CCDC178Q5BJE1 867 aa11.25□□□□□ -0.61
CLK4-209ENST00000521621 ZNF589Q86UQ0 364 aaPredicted RBP11.25□□□□□ -0.61
CLK4-209ENST00000521621 RNF41Q9H4P4 317 aaPredicted RBP11.25□□□□□ -0.61
CLK4-209ENST00000521621 WDR46O15213 610 aaKnown RBP11.25□□□□□ -0.61
CLK4-209ENST00000521621 HMGCS2P54868 508 aa11.25□□□□□ -0.61
CLK4-209ENST00000521621 LACTBP83111 547 aaPredicted RBP11.25□□□□□ -0.61
CLK4-209ENST00000521621 TREML2Q5T2D2 321 aa11.25□□□□□ -0.61
CLK4-209ENST00000521621 RCSD1Q6JBY9 416 aa11.25□□□□□ -0.61
CLK4-209ENST00000521621 GADL1Q6ZQY3 521 aa11.25□□□□□ -0.61
CLK4-209ENST00000521621 VCPKMTQ9H867 229 aa11.25□□□□□ -0.61
CLK4-209ENST00000521621 ADAMTS5Q9UNA0 930 aa11.25□□□□□ -0.61
CLK4-209ENST00000521621 MYH4Q9Y623 1939 aa11.25□□□□□ -0.61
CLK4-209ENST00000521621 CYP2D7A0A087X1C5 515 aa11.24□□□□□ -0.61
CLK4-209ENST00000521621 SGSM2O43147 1006 aa11.24□□□□□ -0.61
CLK4-209ENST00000521621 APPP05067 770 aa11.24□□□□□ -0.61
CLK4-209ENST00000521621 EVX2Q03828 476 aa11.24□□□□□ -0.61
CLK4-209ENST00000521621 ICA1Q05084 483 aa11.24□□□□□ -0.61
CLK4-209ENST00000521621 FBXO46Q6PJ61 603 aaPredicted RBP11.24□□□□□ -0.61
CLK4-209ENST00000521621 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.24□□□□□ -0.61
CLK4-209ENST00000521621 ANKS1AQ92625 1134 aa11.24□□□□□ -0.61
CLK4-209ENST00000521621 CCDC136Q96JN2 1154 aa11.24□□□□□ -0.61
CLK4-209ENST00000521621 VPS53Q5VIR6 699 aa11.24□□□□□ -0.61
CLK4-209ENST00000521621 CCDC129Q6ZRS4 1044 aa11.24□□□□□ -0.61
CLK4-209ENST00000521621 ZNF444Q8N0Y2 327 aaPredicted RBP11.24□□□□□ -0.61
CLK4-209ENST00000521621 MB21D1Q8N884 522 aa11.24□□□□□ -0.61
CLK4-209ENST00000521621 SLC44A5Q8NCS7 719 aa11.24□□□□□ -0.61
CLK4-209ENST00000521621 TTC14Q96N46 770 aa11.24□□□□□ -0.61
CLK4-209ENST00000521621 ASCC2Q9H1I8 757 aaPredicted RBP11.24□□□□□ -0.61
CLK4-209ENST00000521621 MKNK2Q9HBH9 465 aa11.24□□□□□ -0.61
CLK4-209ENST00000521621 GOPCQ9HD26 462 aa11.24□□□□□ -0.61
CLK4-209ENST00000521621 PLXNB2O15031 1838 aa11.23□□□□□ -0.61
CLK4-209ENST00000521621 KIF22Q14807 665 aa11.23□□□□□ -0.61
CLK4-209ENST00000521621 MTA3Q9BTC8 594 aa11.23□□□□□ -0.61
CLK4-209ENST00000521621 MTMR4Q9NYA4 1195 aa11.23□□□□□ -0.61
CLK4-209ENST00000521621 A0A1W2PRG0 241 aa11.23□□□□□ -0.61
CLK4-209ENST00000521621 FDX1P10109 184 aa11.23□□□□□ -0.61
CLK4-209ENST00000521621 VCAM1P19320 739 aa11.23□□□□□ -0.61
CLK4-209ENST00000521621 IRF5Q13568 498 aa11.23□□□□□ -0.61
CLK4-209ENST00000521621 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.23□□□□□ -0.61
CLK4-209ENST00000521621 RABGAP1Q9Y3P9 1069 aa11.23□□□□□ -0.61
CLK4-209ENST00000521621 MINDY4BA8MYZ0 360 aa11.22□□□□□ -0.61
CLK4-209ENST00000521621 TTLL1O95922 423 aa11.22□□□□□ -0.61
CLK4-209ENST00000521621 HOXD10P28358 340 aa11.22□□□□□ -0.61
CLK4-209ENST00000521621 RAB3GAP1Q15042 981 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms