RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 AFF2P51816 1311 aa11.54□□□□□ -0.56
MCF2-209ENST00000520602 TNS2Q63HR2 1409 aa11.54□□□□□ -0.56
MCF2-209ENST00000520602 SMIM22K7EJ46 135 aa11.54□□□□□ -0.56
MCF2-209ENST00000520602 RIOK3O14730 519 aaKnown RBP11.54□□□□□ -0.56
MCF2-209ENST00000520602 APBA3O96018 575 aa11.54□□□□□ -0.56
MCF2-209ENST00000520602 TNNI2P48788 182 aa11.54□□□□□ -0.56
MCF2-209ENST00000520602 KIAA1524Q8TCG1 905 aa11.54□□□□□ -0.56
MCF2-209ENST00000520602 GJD4Q96KN9 370 aaPredicted RBP11.54□□□□□ -0.56
MCF2-209ENST00000520602 NUP88Q99567 741 aaPredicted RBP11.54□□□□□ -0.56
MCF2-209ENST00000520602 TANGO6Q9C0B7 1094 aa11.54□□□□□ -0.56
MCF2-209ENST00000520602 TTF2Q9UNY4 1162 aaKnown RBP11.54□□□□□ -0.56
MCF2-209ENST00000520602 ATP2B4P23634 1241 aa11.54□□□□□ -0.56
MCF2-209ENST00000520602 TXNRD3Q86VQ6 643 aa11.54□□□□□ -0.56
MCF2-209ENST00000520602 MRFAP1L1Q96HT8 127 aa11.54□□□□□ -0.56
MCF2-209ENST00000520602 EPSTI1Q96J88 318 aa11.54□□□□□ -0.56
MCF2-209ENST00000520602 UBA5Q9GZZ9 404 aa11.54□□□□□ -0.56
MCF2-209ENST00000520602 CPVLQ9H3G5 476 aa11.54□□□□□ -0.56
MCF2-209ENST00000520602 DNAI1Q9UI46 699 aa11.54□□□□□ -0.56
MCF2-209ENST00000520602 RIC1Q4ADV7 1423 aa11.53□□□□□ -0.56
MCF2-209ENST00000520602 KLRF2D3W0D1 207 aa11.53□□□□□ -0.56
MCF2-209ENST00000520602 ZSCAN12O43309 604 aa11.53□□□□□ -0.56
MCF2-209ENST00000520602 COBLO75128 1261 aa11.53□□□□□ -0.56
MCF2-209ENST00000520602 DDAH1O94760 285 aa11.53□□□□□ -0.56
MCF2-209ENST00000520602 ATP1A3P13637 1013 aa11.53□□□□□ -0.56
MCF2-209ENST00000520602 PRKCSHP14314 528 aaPredicted RBP11.53□□□□□ -0.56
MCF2-209ENST00000520602 LRRC8AQ8IWT6 810 aa11.53□□□□□ -0.56
MCF2-209ENST00000520602 FUCA2Q9BTY2 467 aa11.53□□□□□ -0.56
MCF2-209ENST00000520602 AP5Z1O43299 807 aa11.53□□□□□ -0.56
MCF2-209ENST00000520602 CCT6AP40227 531 aaKnown RBP11.53□□□□□ -0.56
MCF2-209ENST00000520602 INF2Q27J81 1249 aa11.53□□□□□ -0.56
MCF2-209ENST00000520602 SHC4Q6S5L8 630 aa11.53□□□□□ -0.56
MCF2-209ENST00000520602 MLKLQ8NB16 471 aa11.53□□□□□ -0.56
MCF2-209ENST00000520602 SYMPKQ92797 1274 aaKnown RBP11.53□□□□□ -0.56
MCF2-209ENST00000520602 FAM205CA6NFA0 338 aa11.53□□□□□ -0.56
MCF2-209ENST00000520602 TMEM266Q2M3C6 531 aa11.53□□□□□ -0.56
MCF2-209ENST00000520602 BLIDQ8IZY5 108 aa11.53□□□□□ -0.56
MCF2-209ENST00000520602 CALML4Q96GE6 196 aa11.53□□□□□ -0.56
MCF2-209ENST00000520602 TRIM47Q96LD4 638 aa11.53□□□□□ -0.56
MCF2-209ENST00000520602 TMOD2Q9NZR1 351 aa11.53□□□□□ -0.56
MCF2-209ENST00000520602 CTDP1Q9Y5B0 961 aaPredicted RBP11.53□□□□□ -0.56
MCF2-209ENST00000520602 KIF2AO00139 706 aaPredicted RBP11.52□□□□□ -0.56
MCF2-209ENST00000520602 PCP11498 1178 aaKnown RBP11.52□□□□□ -0.56
MCF2-209ENST00000520602 GNA11P29992 359 aa11.52□□□□□ -0.56
MCF2-209ENST00000520602 ARHGAP29Q52LW3 1261 aa11.52□□□□□ -0.56
MCF2-209ENST00000520602 FERMT2Q96AC1 680 aa11.52□□□□□ -0.56
MCF2-209ENST00000520602 NBPF3Q9H094 633 aa11.52□□□□□ -0.56
MCF2-209ENST00000520602 PAXBP1Q9Y5B6 917 aa11.52□□□□□ -0.56
MCF2-209ENST00000520602 FOXN1O15353 648 aa11.52□□□□□ -0.57
MCF2-209ENST00000520602 PRPF3O43395 683 aaKnown RBP11.52□□□□□ -0.57
MCF2-209ENST00000520602 ZNF76P36508 570 aa11.52□□□□□ -0.57
MCF2-209ENST00000520602 GNG11P61952 73 aa11.52□□□□□ -0.57
MCF2-209ENST00000520602 ASIC1P78348 528 aa11.52□□□□□ -0.57
MCF2-209ENST00000520602 SYT10Q6XYQ8 523 aa11.52□□□□□ -0.57
MCF2-209ENST00000520602 LRRC47Q8N1G4 583 aaKnown RBP11.52□□□□□ -0.57
MCF2-209ENST00000520602 BMP2KQ9NSY1 1161 aaPredicted RBP11.52□□□□□ -0.57
MCF2-209ENST00000520602 USP40Q9NVE5 1235 aa11.52□□□□□ -0.57
MCF2-209ENST00000520602 FOXP2O15409 715 aa11.52□□□□□ -0.57
MCF2-209ENST00000520602 CCNT1O60563 726 aaKnown RBP11.52□□□□□ -0.57
MCF2-209ENST00000520602 CASP1P29466 404 aa11.52□□□□□ -0.57
MCF2-209ENST00000520602 NAP1L1P55209 391 aaKnown RBP11.52□□□□□ -0.57
MCF2-209ENST00000520602 CCDC144BQ3MJ40 725 aa11.52□□□□□ -0.57
MCF2-209ENST00000520602 FBXO33Q7Z6M2 555 aa11.52□□□□□ -0.57
MCF2-209ENST00000520602 ILDR1Q86SU0 546 aaPredicted RBP11.52□□□□□ -0.57
MCF2-209ENST00000520602 SMYD4Q8IYR2 804 aaPredicted RBP11.52□□□□□ -0.57
MCF2-209ENST00000520602 ZNHIT6Q9NWK9 470 aaKnown RBP11.52□□□□□ -0.57
MCF2-209ENST00000520602 CTNND2Q9UQB3 1225 aa11.52□□□□□ -0.57
MCF2-209ENST00000520602 FRMPD2Q68DX3 1309 aaPredicted RBP11.52□□□□□ -0.57
MCF2-209ENST00000520602 EVCP57679 992 aa11.51□□□□□ -0.57
MCF2-209ENST00000520602 GOLGA8FQ08AF8 430 aa11.51□□□□□ -0.57
MCF2-209ENST00000520602 GOLGA8DPQ0D2H9 430 aa11.51□□□□□ -0.57
MCF2-209ENST00000520602 TBC1D22AQ8WUA7 517 aa11.51□□□□□ -0.57
MCF2-209ENST00000520602 PYM1Q9BRP8 204 aaKnown RBP11.51□□□□□ -0.57
MCF2-209ENST00000520602 RAB34Q9BZG1 259 aa11.51□□□□□ -0.57
MCF2-209ENST00000520602 CD209Q9NNX6 404 aa11.51□□□□□ -0.57
MCF2-209ENST00000520602 TXKP42681 527 aa11.51□□□□□ -0.57
MCF2-209ENST00000520602 KIAA0825Q8IV33 1275 aa11.51□□□□□ -0.57
MCF2-209ENST00000520602 ENGASEQ8NFI3 743 aa11.51□□□□□ -0.57
MCF2-209ENST00000520602 UBXN4Q92575 508 aa11.51□□□□□ -0.57
MCF2-209ENST00000520602 VPS16Q9H269 839 aa11.51□□□□□ -0.57
MCF2-209ENST00000520602 PDCL3Q9H2J4 239 aa11.51□□□□□ -0.57
MCF2-209ENST00000520602 EPS15P42566 896 aa11.51□□□□□ -0.57
MCF2-209ENST00000520602 RC3H1Q5TC82 1133 aaKnown RBP11.51□□□□□ -0.57
MCF2-209ENST00000520602 USP17L2Q6R6M4 530 aa11.51□□□□□ -0.57
MCF2-209ENST00000520602 TMTC3Q6ZXV5 915 aa11.51□□□□□ -0.57
MCF2-209ENST00000520602 TIGD1Q96MW7 591 aa11.51□□□□□ -0.57
MCF2-209ENST00000520602 RMND1Q9NWS8 449 aa11.51□□□□□ -0.57
MCF2-209ENST00000520602 BAZ2BQ9UIF8 2168 aaKnown RBP11.5□□□□□ -0.57
MCF2-209ENST00000520602 SMCO2A6NFE2 343 aa11.5□□□□□ -0.57
MCF2-209ENST00000520602 BBOX1O75936 387 aa11.5□□□□□ -0.57
MCF2-209ENST00000520602 MTIF2P46199 727 aaKnown RBP11.5□□□□□ -0.57
MCF2-209ENST00000520602 GPSM2P81274 684 aa11.5□□□□□ -0.57
MCF2-209ENST00000520602 IQCB1Q15051 598 aa11.5□□□□□ -0.57
MCF2-209ENST00000520602 RESP18Q5W5W9 173 aa11.5□□□□□ -0.57
MCF2-209ENST00000520602 KRT27Q7Z3Y8 459 aa11.5□□□□□ -0.57
MCF2-209ENST00000520602 MYRIPQ8NFW9 859 aa11.5□□□□□ -0.57
MCF2-209ENST00000520602 BIN2Q9UBW5 565 aaPredicted RBP11.5□□□□□ -0.57
MCF2-209ENST00000520602 JCADQ9P266 1359 aa11.5□□□□□ -0.57
MCF2-209ENST00000520602 STK36Q9NRP7 1315 aa11.5□□□□□ -0.57
MCF2-209ENST00000520602 PTPREP23469 700 aa11.5□□□□□ -0.57
MCF2-209ENST00000520602 CBX1P83916 185 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms