RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 VEGFBP49765 207 aa15.26■□□□□ 0.03
LIMCH1-220ENST00000514190 APOBRQ0VD83 1088 aa15.26■□□□□ 0.03
LIMCH1-220ENST00000514190 DEFB115Q30KQ5 88 aa15.26■□□□□ 0.03
LIMCH1-220ENST00000514190 DCAF15Q66K64 600 aa15.26■□□□□ 0.03
LIMCH1-220ENST00000514190 RCSD1Q6JBY9 416 aa15.26■□□□□ 0.03
LIMCH1-220ENST00000514190 ZNF274Q96GC6 653 aaPredicted RBP15.26■□□□□ 0.03
LIMCH1-220ENST00000514190 SENP2Q9HC62 589 aa15.26■□□□□ 0.03
LIMCH1-220ENST00000514190 BRPF3Q9ULD4 1205 aa15.26■□□□□ 0.03
LIMCH1-220ENST00000514190 PLIN4Q96Q06 1357 aa15.25■□□□□ 0.03
LIMCH1-220ENST00000514190 PHF20L1A8MW92 1017 aa15.25■□□□□ 0.03
LIMCH1-220ENST00000514190 ADM5C9JUS6 153 aa15.25■□□□□ 0.03
LIMCH1-220ENST00000514190 ME3Q16798 604 aa15.25■□□□□ 0.03
LIMCH1-220ENST00000514190 ABCB5Q2M3G0 1257 aa15.25■□□□□ 0.03
LIMCH1-220ENST00000514190 ZNF408Q9H9D4 720 aa15.25■□□□□ 0.03
LIMCH1-220ENST00000514190 SH2B1Q9NRF2 756 aaPredicted RBP15.25■□□□□ 0.03
LIMCH1-220ENST00000514190 DAXXQ9UER7 740 aaPredicted RBP15.25■□□□□ 0.03
LIMCH1-220ENST00000514190 TLL2Q9Y6L7 1015 aa15.25■□□□□ 0.03
LIMCH1-220ENST00000514190 SIPA1L1O43166 1804 aa15.24■□□□□ 0.03
LIMCH1-220ENST00000514190 KLF18A0A0U1RQI7 1052 aa15.24■□□□□ 0.03
LIMCH1-220ENST00000514190 CCDC69A6NI79 296 aa15.24■□□□□ 0.03
LIMCH1-220ENST00000514190 MPHOSPH10O00566 681 aaKnown RBP15.24■□□□□ 0.03
LIMCH1-220ENST00000514190 PFKFB2O60825 505 aa15.24■□□□□ 0.03
LIMCH1-220ENST00000514190 PDIA3P30101 505 aaKnown RBP15.24■□□□□ 0.03
LIMCH1-220ENST00000514190 CAP2P40123 477 aa15.24■□□□□ 0.03
LIMCH1-220ENST00000514190 SLC4A3P48751 1232 aa15.24■□□□□ 0.03
LIMCH1-220ENST00000514190 JAG1P78504 1218 aa15.24■□□□□ 0.03
LIMCH1-220ENST00000514190 CUL4AQ13619 759 aa15.24■□□□□ 0.03
LIMCH1-220ENST00000514190 PPP4R3BQ5MIZ7 849 aa15.24■□□□□ 0.03
LIMCH1-220ENST00000514190 IFIT1BQ5T764 474 aaKnown RBP15.24■□□□□ 0.03
LIMCH1-220ENST00000514190 NFXL1Q6ZNB6 911 aa15.24■□□□□ 0.03
LIMCH1-220ENST00000514190 TMEM179Q6ZVK1 233 aa15.24■□□□□ 0.03
LIMCH1-220ENST00000514190 CEP95Q96GE4 821 aa15.24■□□□□ 0.03
LIMCH1-220ENST00000514190 ZNF341Q9BYN7 854 aa15.24■□□□□ 0.03
LIMCH1-220ENST00000514190 CABP5Q9NP86 173 aa15.24■□□□□ 0.03
LIMCH1-220ENST00000514190 MTMR4Q9NYA4 1195 aa15.24■□□□□ 0.03
LIMCH1-220ENST00000514190 ZNF112Q9UJU3 913 aa15.24■□□□□ 0.03
LIMCH1-220ENST00000514190 GDF11O95390 407 aa15.23■□□□□ 0.03
LIMCH1-220ENST00000514190 LARGE1O95461 756 aa15.23■□□□□ 0.03
LIMCH1-220ENST00000514190 HSPA1AP0DMV8 641 aaKnown RBP15.23■□□□□ 0.03
LIMCH1-220ENST00000514190 HSPA1BP0DMV9 641 aaKnown RBP15.23■□□□□ 0.03
LIMCH1-220ENST00000514190 GUCY1A2P33402 732 aa15.23■□□□□ 0.03
LIMCH1-220ENST00000514190 APOA5Q6Q788 366 aa15.23■□□□□ 0.03
LIMCH1-220ENST00000514190 DLK2Q6UY11 383 aa15.23■□□□□ 0.03
LIMCH1-220ENST00000514190 SYNE3Q6ZMZ3 975 aa15.23■□□□□ 0.03
LIMCH1-220ENST00000514190 SAPCD2Q86UD0 394 aa15.23■□□□□ 0.03
LIMCH1-220ENST00000514190 KANSL2Q9H9L4 492 aa15.23■□□□□ 0.03
LIMCH1-220ENST00000514190 GINM1Q9NU53 330 aa15.23■□□□□ 0.03
LIMCH1-220ENST00000514190 SLC12A7Q9Y666 1083 aa15.23■□□□□ 0.03
LIMCH1-220ENST00000514190 WDR33Q9C0J8 1336 aaKnown RBP15.22■□□□□ 0.03
LIMCH1-220ENST00000514190 THSD7BQ9C0I4 1608 aa15.22■□□□□ 0.03
LIMCH1-220ENST00000514190 CTNND1O60716 968 aaKnown RBP15.22■□□□□ 0.03
LIMCH1-220ENST00000514190 GH2P01242 217 aa15.22■□□□□ 0.03
LIMCH1-220ENST00000514190 TOP1P11387 765 aaKnown RBP15.22■□□□□ 0.03
LIMCH1-220ENST00000514190 RCAN1P53805 252 aa15.22■□□□□ 0.03
LIMCH1-220ENST00000514190 SEPT2Q15019 361 aa15.22■□□□□ 0.03
LIMCH1-220ENST00000514190 SHROOM1Q2M3G4 852 aaPredicted RBP15.22■□□□□ 0.03
LIMCH1-220ENST00000514190 CATIPQ7Z7H3 387 aa15.22■□□□□ 0.03
LIMCH1-220ENST00000514190 NECAB1Q8N987 351 aa15.22■□□□□ 0.03
LIMCH1-220ENST00000514190 CHMP4CQ96CF2 233 aa15.22■□□□□ 0.03
LIMCH1-220ENST00000514190 CDCA5Q96FF9 252 aa15.22■□□□□ 0.03
LIMCH1-220ENST00000514190 TMEM47Q9BQJ4 181 aa15.22■□□□□ 0.03
LIMCH1-220ENST00000514190 SLKQ9H2G2 1235 aaPredicted RBP15.22■□□□□ 0.03
LIMCH1-220ENST00000514190 NYAP2Q9P242 653 aa15.22■□□□□ 0.03
LIMCH1-220ENST00000514190 NAP1L2Q9ULW6 460 aaPredicted RBP15.22■□□□□ 0.03
LIMCH1-220ENST00000514190 STX8Q9UNK0 236 aa15.22■□□□□ 0.03
LIMCH1-220ENST00000514190 HPS5Q9UPZ3 1129 aa15.22■□□□□ 0.03
LIMCH1-220ENST00000514190 GOLGA8BA8MQT2 603 aa15.21■□□□□ 0.03
LIMCH1-220ENST00000514190 ZBTB43O43298 467 aa15.21■□□□□ 0.03
LIMCH1-220ENST00000514190 USP2O75604 605 aaPredicted RBP15.21■□□□□ 0.03
LIMCH1-220ENST00000514190 TTLL1O95922 423 aa15.21■□□□□ 0.03
LIMCH1-220ENST00000514190 ECE1P42892 770 aa15.21■□□□□ 0.03
LIMCH1-220ENST00000514190 STK3Q13188 491 aa15.21■□□□□ 0.03
LIMCH1-220ENST00000514190 PAXIP1Q6ZW49 1069 aaPredicted RBP15.21■□□□□ 0.03
LIMCH1-220ENST00000514190 SIAH1Q8IUQ4 282 aa15.21■□□□□ 0.03
LIMCH1-220ENST00000514190 ZNF654Q8IZM8 581 aa15.21■□□□□ 0.03
LIMCH1-220ENST00000514190 GTF3C6Q969F1 213 aa15.21■□□□□ 0.03
LIMCH1-220ENST00000514190 MKL1Q969V6 931 aa15.21■□□□□ 0.03
LIMCH1-220ENST00000514190 INTS4Q96HW7 963 aaKnown RBP15.21■□□□□ 0.03
LIMCH1-220ENST00000514190 HHIPL1Q96JK4 782 aa15.21■□□□□ 0.03
LIMCH1-220ENST00000514190 CAPNS2Q96L46 248 aa15.21■□□□□ 0.03
LIMCH1-220ENST00000514190 KAT14Q9H8E8 782 aa15.21■□□□□ 0.03
LIMCH1-220ENST00000514190 ZBTB21Q9ULJ3 1066 aa15.21■□□□□ 0.03
LIMCH1-220ENST00000514190 PPP1R12BO60237 982 aaPredicted RBP15.2■□□□□ 0.02
LIMCH1-220ENST00000514190 ASNSP08243 561 aa15.2■□□□□ 0.02
LIMCH1-220ENST00000514190 NF2P35240 595 aa15.2■□□□□ 0.02
LIMCH1-220ENST00000514190 ST3GAL1Q11201 340 aa15.2■□□□□ 0.02
LIMCH1-220ENST00000514190 TROAPQ12815 778 aa15.2■□□□□ 0.02
LIMCH1-220ENST00000514190 PPP2R5BQ15173 497 aa15.2■□□□□ 0.02
LIMCH1-220ENST00000514190 CYP4F22Q6NT55 531 aa15.2■□□□□ 0.02
LIMCH1-220ENST00000514190 PNMA1Q8ND90 353 aa15.2■□□□□ 0.02
LIMCH1-220ENST00000514190 CLIP2Q9UDT6 1046 aa15.2■□□□□ 0.02
LIMCH1-220ENST00000514190 SSC5DA1L4H1 1573 aa15.19■□□□□ 0.02
LIMCH1-220ENST00000514190 DDAH1O94760 285 aa15.19■□□□□ 0.02
LIMCH1-220ENST00000514190 CALM1P0DP23 149 aa15.19■□□□□ 0.02
LIMCH1-220ENST00000514190 CALM2P0DP24 149 aa15.19■□□□□ 0.02
LIMCH1-220ENST00000514190 CALM3P0DP25 149 aa15.19■□□□□ 0.02
LIMCH1-220ENST00000514190 EEF2P13639 858 aaKnown RBP15.19■□□□□ 0.02
LIMCH1-220ENST00000514190 INPP5BP32019 993 aa15.19■□□□□ 0.02
LIMCH1-220ENST00000514190 METAP2P50579 478 aaKnown RBP eCLIP15.19■□□□□ 0.02
LIMCH1-220ENST00000514190 CCT2P78371 535 aaKnown RBP15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms