RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 TTC6Q86TZ1 520 aa9.29□□□□□ -0.92
LIMCH1-219ENST00000514096 PLEKHM2Q8IWE5 1019 aa9.29□□□□□ -0.92
LIMCH1-219ENST00000514096 SH3TC2Q8TF17 1288 aa9.29□□□□□ -0.92
LIMCH1-219ENST00000514096 PTPN18Q99952 460 aa9.29□□□□□ -0.92
LIMCH1-219ENST00000514096 SNCAIPQ9Y6H5 919 aa9.29□□□□□ -0.92
LIMCH1-219ENST00000514096 CNGA1P29973 690 aa9.28□□□□□ -0.92
LIMCH1-219ENST00000514096 CCDC96Q2M329 555 aa9.28□□□□□ -0.92
LIMCH1-219ENST00000514096 FBXO28Q9NVF7 368 aa9.28□□□□□ -0.92
LIMCH1-219ENST00000514096 TMOD4Q9NZQ9 345 aa9.28□□□□□ -0.92
LIMCH1-219ENST00000514096 TSPY3P0CV98 308 aa9.28□□□□□ -0.92
LIMCH1-219ENST00000514096 TSPY8P0CW00 308 aa9.28□□□□□ -0.92
LIMCH1-219ENST00000514096 CHRM1P11229 460 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-219ENST00000514096 ANAPC15P60006 121 aa9.28□□□□□ -0.92
LIMCH1-219ENST00000514096 OTUD7BQ6GQQ9 843 aa9.28□□□□□ -0.92
LIMCH1-219ENST00000514096 ZSCAN25Q6NSZ9 544 aa9.28□□□□□ -0.92
LIMCH1-219ENST00000514096 NACAP1Q9BZK3 213 aa9.28□□□□□ -0.92
LIMCH1-219ENST00000514096 WBP1LQ9NX94 342 aa9.28□□□□□ -0.92
LIMCH1-219ENST00000514096 DDX49Q9Y6V7 483 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-219ENST00000514096 ADAMTSL1Q8N6G6 1762 aa9.28□□□□□ -0.92
LIMCH1-219ENST00000514096 RXRAP19793 462 aa9.28□□□□□ -0.92
LIMCH1-219ENST00000514096 ERO1BQ86YB8 467 aa9.28□□□□□ -0.92
LIMCH1-219ENST00000514096 FLOT1O75955 427 aa9.27□□□□□ -0.92
LIMCH1-219ENST00000514096 SDSP20132 328 aa9.27□□□□□ -0.92
LIMCH1-219ENST00000514096 CYP2B6P20813 491 aa9.27□□□□□ -0.92
LIMCH1-219ENST00000514096 SNAPC2Q13487 334 aa9.27□□□□□ -0.92
LIMCH1-219ENST00000514096 KIFC2Q96AC6 838 aa9.27□□□□□ -0.92
LIMCH1-219ENST00000514096 PANK2Q9BZ23 570 aa9.27□□□□□ -0.92
LIMCH1-219ENST00000514096 GPR108Q9NPR9 543 aa9.27□□□□□ -0.92
LIMCH1-219ENST00000514096 BAZ2BQ9UIF8 2168 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-219ENST00000514096 SLC10A3P09131 477 aa9.27□□□□□ -0.93
LIMCH1-219ENST00000514096 GOLGA8HP0CJ92 632 aa9.27□□□□□ -0.93
LIMCH1-219ENST00000514096 PTPRAP18433 802 aa9.27□□□□□ -0.93
LIMCH1-219ENST00000514096 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.27□□□□□ -0.93
LIMCH1-219ENST00000514096 PI4K2BQ8TCG2 481 aa9.27□□□□□ -0.93
LIMCH1-219ENST00000514096 SLKQ9H2G2 1235 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-219ENST00000514096 ELNP15502 786 aa9.27□□□□□ -0.93
LIMCH1-219ENST00000514096 MCCP23508 829 aa9.27□□□□□ -0.93
LIMCH1-219ENST00000514096 TFAP4Q01664 338 aa9.27□□□□□ -0.93
LIMCH1-219ENST00000514096 ICA1Q05084 483 aa9.27□□□□□ -0.93
LIMCH1-219ENST00000514096 APPBP2Q92624 585 aa9.27□□□□□ -0.93
LIMCH1-219ENST00000514096 GPCPD1Q9NPB8 672 aa9.27□□□□□ -0.93
LIMCH1-219ENST00000514096 SLC16A2P36021 539 aa9.26□□□□□ -0.93
LIMCH1-219ENST00000514096 SREBF2Q12772 1141 aa9.26□□□□□ -0.93
LIMCH1-219ENST00000514096 IFNL3Q8IZI9 196 aa9.26□□□□□ -0.93
LIMCH1-219ENST00000514096 NUP133Q8WUM0 1156 aa9.26□□□□□ -0.93
LIMCH1-219ENST00000514096 DNAJC18Q9H819 358 aa9.26□□□□□ -0.93
LIMCH1-219ENST00000514096 EFCC1Q9HA90 598 aa9.26□□□□□ -0.93
LIMCH1-219ENST00000514096 SPDYE4A6NLX3 237 aa9.26□□□□□ -0.93
LIMCH1-219ENST00000514096 GPR25O00155 361 aa9.26□□□□□ -0.93
LIMCH1-219ENST00000514096 SORBS3O60504 671 aa9.26□□□□□ -0.93
LIMCH1-219ENST00000514096 PSMC4P43686 418 aa9.26□□□□□ -0.93
LIMCH1-219ENST00000514096 CDK8P49336 464 aa9.26□□□□□ -0.93
LIMCH1-219ENST00000514096 IFNL1Q8IU54 200 aa9.26□□□□□ -0.93
LIMCH1-219ENST00000514096 IL25Q9H293 177 aa9.26□□□□□ -0.93
LIMCH1-219ENST00000514096 PRDM16Q9HAZ2 1276 aa9.26□□□□□ -0.93
LIMCH1-219ENST00000514096 FRMPD2Q68DX3 1309 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-219ENST00000514096 KCTD1Q719H9 257 aa9.26□□□□□ -0.93
LIMCH1-219ENST00000514096 TRMT1LQ7Z2T5 733 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-219ENST00000514096 SCYL3Q8IZE3 742 aa9.26□□□□□ -0.93
LIMCH1-219ENST00000514096 UIMC1Q96RL1 719 aa9.26□□□□□ -0.93
LIMCH1-219ENST00000514096 RIOK1Q9BRS2 568 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-219ENST00000514096 PGAP2Q9UHJ9 254 aa9.26□□□□□ -0.93
LIMCH1-219ENST00000514096 DLEC1Q9Y238 1755 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 USP17L5A8MUK1 530 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 B4E1Z4 1266 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 TNPO2O14787 897 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 HSPA8P11142 646 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 CPA1P15085 419 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 CAP2P40123 477 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 MFAP1P55081 439 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 NUCB1Q02818 461 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 CCDC174Q6PII3 467 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 EEPD1Q7L9B9 569 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 FAM83AQ86UY5 434 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 NCAPG2Q86XI2 1143 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 HOMER1Q86YM7 354 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 ZNF280CQ8ND82 737 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 EVI5LQ96CN4 794 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 STRBPQ96SI9 672 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 ZBTB21Q9ULJ3 1066 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 FAM155AB1AL88 458 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 USP17L10C9JJH3 530 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 FOSBP53539 338 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 HDLBPQ00341 1268 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 DMTNQ08495 405 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 AXDND1Q5T1B0 1012 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 CTR9Q6PD62 1173 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 ZBED3Q96IU2 234 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 hCG_1642624A0A1W2PR95 340 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 GSG1L2A8MUP6 293 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 MAP2K2P36507 400 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 GTF2A2P52657 109 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 TAF3Q5VWG9 929 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 RAET1EQ8TD07 263 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 MYL10Q9BUA6 226 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 ZFYVE28Q9HCC9 887 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 SUGT1Q9Y2Z0 365 aa9.25□□□□□ -0.93
LIMCH1-219ENST00000514096 UQCRHLA0A096LP55 91 aa9.24□□□□□ -0.93
LIMCH1-219ENST00000514096 ENTPD3O75355 529 aa9.24□□□□□ -0.93
LIMCH1-219ENST00000514096 FGAP02671 866 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms