RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 MCAMP43121 646 aa13.48□□□□□ -0.25
DDX41-216ENST00000513562 PPP4CP60510 307 aa13.48□□□□□ -0.25
DDX41-216ENST00000513562 USP17L24Q0WX57 530 aa13.48□□□□□ -0.25
DDX41-216ENST00000513562 GJC2Q5T442 439 aaPredicted RBP13.48□□□□□ -0.25
DDX41-216ENST00000513562 LBX2Q6XYB7 198 aa13.48□□□□□ -0.25
DDX41-216ENST00000513562 MAPKAPK5Q8IW41 473 aa13.48□□□□□ -0.25
DDX41-216ENST00000513562 ARRDC4Q8NCT1 418 aa13.48□□□□□ -0.25
DDX41-216ENST00000513562 TGFBRAP1Q8WUH2 860 aa13.48□□□□□ -0.25
DDX41-216ENST00000513562 NEUROD6Q96NK8 337 aa13.48□□□□□ -0.25
DDX41-216ENST00000513562 TRIM34Q9BYJ4 488 aa13.48□□□□□ -0.25
DDX41-216ENST00000513562 PRDM5Q9NQX1 630 aaPredicted RBP13.48□□□□□ -0.25
DDX41-216ENST00000513562 PDLIM7Q9NR12 457 aa13.48□□□□□ -0.25
DDX41-216ENST00000513562 LRP2BPQ9P2M1 347 aa13.48□□□□□ -0.25
DDX41-216ENST00000513562 IVNS1ABPQ9Y6Y0 642 aa13.48□□□□□ -0.25
DDX41-216ENST00000513562 E9PSI1 815 aa13.47□□□□□ -0.25
DDX41-216ENST00000513562 COL9A1P20849 921 aa13.47□□□□□ -0.25
DDX41-216ENST00000513562 MTX1Q13505 466 aa13.47□□□□□ -0.25
DDX41-216ENST00000513562 TRIM60Q495X7 471 aa13.47□□□□□ -0.25
DDX41-216ENST00000513562 TJAP1Q5JTD0 557 aa13.47□□□□□ -0.25
DDX41-216ENST00000513562 WDR78Q5VTH9 848 aa13.47□□□□□ -0.25
DDX41-216ENST00000513562 NAA16Q6N069 864 aaPredicted RBP13.47□□□□□ -0.25
DDX41-216ENST00000513562 CATSPERGQ6ZRH7 1159 aa13.47□□□□□ -0.25
DDX41-216ENST00000513562 MEIS3Q99687 375 aa13.47□□□□□ -0.25
DDX41-216ENST00000513562 SMC4Q9NTJ3 1288 aa13.47□□□□□ -0.25
DDX41-216ENST00000513562 BTBD7Q9P203 1132 aa13.47□□□□□ -0.25
DDX41-216ENST00000513562 PALD1Q9ULE6 856 aa13.47□□□□□ -0.25
DDX41-216ENST00000513562 FRMPD3Q5JV73 1810 aa13.47□□□□□ -0.25
DDX41-216ENST00000513562 TTC28Q96AY4 2481 aa13.47□□□□□ -0.25
DDX41-216ENST00000513562 TRIM43BA6NCK2 446 aa13.46□□□□□ -0.25
DDX41-216ENST00000513562 KBTBD13C9JR72 458 aa13.46□□□□□ -0.25
DDX41-216ENST00000513562 SRGAP3O43295 1099 aa13.46□□□□□ -0.25
DDX41-216ENST00000513562 GH2P01242 217 aa13.46□□□□□ -0.25
DDX41-216ENST00000513562 VCAM1P19320 739 aa13.46□□□□□ -0.25
DDX41-216ENST00000513562 GORABQ5T7V8 394 aa13.46□□□□□ -0.25
DDX41-216ENST00000513562 C1orf53Q5VUE5 145 aa13.46□□□□□ -0.25
DDX41-216ENST00000513562 OLFML2BQ68BL8 750 aa13.46□□□□□ -0.25
DDX41-216ENST00000513562 SH3RF1Q7Z6J0 888 aa13.46□□□□□ -0.25
DDX41-216ENST00000513562 ADGRA1Q86SQ6 560 aa13.46□□□□□ -0.25
DDX41-216ENST00000513562 TRIM43Q96BQ3 446 aaPredicted RBP13.46□□□□□ -0.25
DDX41-216ENST00000513562 FEZ1Q99689 392 aa13.46□□□□□ -0.25
DDX41-216ENST00000513562 SPDYE16A6NNV3 312 aaPredicted RBP13.45□□□□□ -0.26
DDX41-216ENST00000513562 TNFRSF10AO00220 468 aa13.45□□□□□ -0.26
DDX41-216ENST00000513562 SEPT4O43236 478 aa13.45□□□□□ -0.26
DDX41-216ENST00000513562 HLA-DOAP06340 250 aa13.45□□□□□ -0.26
DDX41-216ENST00000513562 UQCRFS1P1P0C7P4 283 aa13.45□□□□□ -0.26
DDX41-216ENST00000513562 USP14P54578 494 aa13.45□□□□□ -0.26
DDX41-216ENST00000513562 ZYXQ15942 572 aaKnown RBP13.45□□□□□ -0.26
DDX41-216ENST00000513562 ATF7IPQ6VMQ6 1270 aa13.45□□□□□ -0.26
DDX41-216ENST00000513562 USP38Q8NB14 1042 aa13.45□□□□□ -0.26
DDX41-216ENST00000513562 KIAA1683Q9H0B3 1180 aa13.45□□□□□ -0.26
DDX41-216ENST00000513562 TATDN1Q6P1N9 297 aa13.44□□□□□ -0.26
DDX41-216ENST00000513562 FAM9BQ8IZU0 186 aa13.44□□□□□ -0.26
DDX41-216ENST00000513562 RNPC3Q96LT9 517 aaKnown RBP13.44□□□□□ -0.26
DDX41-216ENST00000513562 SAP30BPQ9UHR5 308 aaKnown RBP13.44□□□□□ -0.26
DDX41-216ENST00000513562 ANP32CO43423 234 aa13.43□□□□□ -0.26
DDX41-216ENST00000513562 IGSF3O75054 1194 aa13.43□□□□□ -0.26
DDX41-216ENST00000513562 ITGB8P26012 769 aa13.43□□□□□ -0.26
DDX41-216ENST00000513562 ADORA2AP29274 412 aa13.43□□□□□ -0.26
DDX41-216ENST00000513562 ADCYAP1R1P41586 468 aa13.43□□□□□ -0.26
DDX41-216ENST00000513562 EPHB4P54760 987 aa13.43□□□□□ -0.26
DDX41-216ENST00000513562 SLFN5Q08AF3 891 aa13.43□□□□□ -0.26
DDX41-216ENST00000513562 GRIN2CQ14957 1233 aa13.43□□□□□ -0.26
DDX41-216ENST00000513562 LRRC41Q15345 812 aa13.43□□□□□ -0.26
DDX41-216ENST00000513562 ANO1Q5XXA6 986 aa13.43□□□□□ -0.26
DDX41-216ENST00000513562 DPP9Q86TI2 863 aa13.43□□□□□ -0.26
DDX41-216ENST00000513562 ACER1Q8TDN7 264 aa13.43□□□□□ -0.26
DDX41-216ENST00000513562 API5Q9BZZ5 524 aaKnown RBP13.43□□□□□ -0.26
DDX41-216ENST00000513562 NOB1Q9ULX3 412 aaKnown RBP13.43□□□□□ -0.26
DDX41-216ENST00000513562 ZNF236Q9UL36 1845 aa13.42□□□□□ -0.26
DDX41-216ENST00000513562 STRNO43815 780 aa13.42□□□□□ -0.26
DDX41-216ENST00000513562 GNAI3P08754 354 aa13.42□□□□□ -0.26
DDX41-216ENST00000513562 TLE2Q04725 743 aa13.42□□□□□ -0.26
DDX41-216ENST00000513562 RAB3GAP1Q15042 981 aa13.42□□□□□ -0.26
DDX41-216ENST00000513562 MOV10L1Q9BXT6 1211 aaKnown RBP13.42□□□□□ -0.26
DDX41-216ENST00000513562 EHD4Q9H223 541 aa13.42□□□□□ -0.26
DDX41-216ENST00000513562 RPAP3Q9H6T3 665 aaPredicted RBP13.42□□□□□ -0.26
DDX41-216ENST00000513562 SNRKQ9NRH2 765 aa13.42□□□□□ -0.26
DDX41-216ENST00000513562 TACC3Q9Y6A5 838 aa13.42□□□□□ -0.26
DDX41-216ENST00000513562 KIAA0355O15063 1070 aa13.41□□□□□ -0.26
DDX41-216ENST00000513562 COBLO75128 1261 aa13.41□□□□□ -0.26
DDX41-216ENST00000513562 CYP2E1P05181 493 aaPredicted RBP13.41□□□□□ -0.26
DDX41-216ENST00000513562 CLTBP09497 229 aa13.41□□□□□ -0.26
DDX41-216ENST00000513562 DNAJB2P25686 324 aa13.41□□□□□ -0.26
DDX41-216ENST00000513562 FAM47AQ5JRC9 791 aa13.41□□□□□ -0.26
DDX41-216ENST00000513562 SHCBP1Q8NEM2 672 aa13.41□□□□□ -0.26
DDX41-216ENST00000513562 FERMT2Q96AC1 680 aa13.41□□□□□ -0.26
DDX41-216ENST00000513562 SERPINB13Q9UIV8 391 aa13.41□□□□□ -0.26
DDX41-216ENST00000513562 PHF24Q9UPV7 400 aa13.41□□□□□ -0.26
DDX41-216ENST00000513562 RLFQ13129 1914 aa13.41□□□□□ -0.26
DDX41-216ENST00000513562 MYCNP04198 464 aaPredicted RBP13.4□□□□□ -0.26
DDX41-216ENST00000513562 DYNLL1P63167 89 aaKnown RBP13.4□□□□□ -0.26
DDX41-216ENST00000513562 ABCB5Q2M3G0 1257 aa13.4□□□□□ -0.26
DDX41-216ENST00000513562 CERKLQ49MI3 558 aaPredicted RBP13.4□□□□□ -0.26
DDX41-216ENST00000513562 TTC39AQ5SRH9 613 aa13.4□□□□□ -0.26
DDX41-216ENST00000513562 SPATC1LQ9H0A9 340 aa13.4□□□□□ -0.26
DDX41-216ENST00000513562 RAPGEFL1Q9UHV5 662 aa13.4□□□□□ -0.26
DDX41-216ENST00000513562 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.39□□□□□ -0.27
DDX41-216ENST00000513562 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.39□□□□□ -0.27
DDX41-216ENST00000513562 RAG1P15918 1043 aa13.39□□□□□ -0.27
DDX41-216ENST00000513562 ERCC3P19447 782 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms