RNA–Protein interactions for RNA: ENST00000513284.5

RNF4-218, Transcript of ring finger protein 4, human

TSL 4

Gene RNF4, Length 517 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-218	ENST00000513284	C12orf42	Q96LP6	360 aa		13.85	□□□□□ -0.19
RNF4-218	ENST00000513284	ASB2	Q96Q27	587 aa		13.85	□□□□□ -0.19
RNF4-218	ENST00000513284	DHX36	Q9H2U1	1008 aa	Known RBP	13.85	□□□□□ -0.19
RNF4-218	ENST00000513284	PALD1	Q9ULE6	856 aa		13.85	□□□□□ -0.19
RNF4-218	ENST00000513284	BDP1	A6H8Y1	2624 aa		13.85	□□□□□ -0.19
RNF4-218	ENST00000513284	XIRP2	A4UGR9	3374 aa		13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	USP17L15	C9J2P7	530 aa		13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	USP17L13	C9JLJ4	530 aa		13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	USP17L11	C9JVI0	530 aa		13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	USP17L18	D6R9N7	530 aa		13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	USP17L22	D6RA61	530 aa		13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	USP17L17	D6RBQ6	530 aa		13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	USP17L19	D6RCP7	530 aa		13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	USP17L20	D6RJB6	530 aa		13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	COBL	O75128	1261 aa		13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	GLRX3	O76003	335 aa	Known RBP	13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	DNAJB2	P25686	324 aa		13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	PPP4C	P60510	307 aa		13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	GSTO1	P78417	241 aa		13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	USP17L24	Q0WX57	530 aa		13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	TFCP2	Q12800	502 aa		13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	LRRC41	Q15345	812 aa		13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	LBX2	Q6XYB7	198 aa		13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	MAPKAPK5	Q8IW41	473 aa		13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	SPATA5	Q8NB90	893 aa		13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	ATXN2L	Q8WWM7	1075 aa	Known RBP	13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	FAM122A	Q96E09	287 aa		13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	RNPC3	Q96LT9	517 aa	Known RBP	13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	ZNF576	Q9H609	170 aa		13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	GINM1	Q9NU53	330 aa		13.84	□□□□□ -0.19
RNF4-218	ENST00000513284	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	13.83	□□□□□ -0.2
RNF4-218	ENST00000513284	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	13.83	□□□□□ -0.2
RNF4-218	ENST00000513284	KIAA0355	O15063	1070 aa		13.83	□□□□□ -0.2
RNF4-218	ENST00000513284	SEPT4	O43236	478 aa		13.83	□□□□□ -0.2
RNF4-218	ENST00000513284	CCNA1	P78396	465 aa		13.83	□□□□□ -0.2
RNF4-218	ENST00000513284	WDR78	Q5VTH9	848 aa		13.83	□□□□□ -0.2
RNF4-218	ENST00000513284	OLFML2B	Q68BL8	750 aa		13.83	□□□□□ -0.2
RNF4-218	ENST00000513284	ADGRA1	Q86SQ6	560 aa		13.83	□□□□□ -0.2
RNF4-218	ENST00000513284	ACER1	Q8TDN7	264 aa		13.83	□□□□□ -0.2
RNF4-218	ENST00000513284	TGFBRAP1	Q8WUH2	860 aa		13.83	□□□□□ -0.2
RNF4-218	ENST00000513284	PPM1E	Q8WY54	764 aa		13.83	□□□□□ -0.2
RNF4-218	ENST00000513284	AATF	Q9NY61	560 aa	Known RBP eCLIP	13.83	□□□□□ -0.2
RNF4-218	ENST00000513284	RAI14	Q9P0K7	980 aa		13.83	□□□□□ -0.2
RNF4-218	ENST00000513284	TACC3	Q9Y6A5	838 aa		13.83	□□□□□ -0.2
RNF4-218	ENST00000513284	CHD7	Q9P2D1	2997 aa		13.82	□□□□□ -0.2
RNF4-218	ENST00000513284	KBTBD13	C9JR72	458 aa		13.82	□□□□□ -0.2
RNF4-218	ENST00000513284	GH2	P01242	217 aa		13.82	□□□□□ -0.2
RNF4-218	ENST00000513284	PBX2	P40425	430 aa		13.82	□□□□□ -0.2
RNF4-218	ENST00000513284	ADGRE1	Q14246	886 aa		13.82	□□□□□ -0.2
RNF4-218	ENST00000513284	ZYX	Q15942	572 aa	Known RBP	13.82	□□□□□ -0.2
RNF4-218	ENST00000513284	C16orf59	Q7L2K0	433 aa		13.82	□□□□□ -0.2
RNF4-218	ENST00000513284	ADAMTS19	Q8TE59	1207 aa		13.82	□□□□□ -0.2
RNF4-218	ENST00000513284	CWC22	Q9HCG8	908 aa	Known RBP	13.82	□□□□□ -0.2
RNF4-218	ENST00000513284	FLT1	P17948	1338 aa		13.82	□□□□□ -0.2
RNF4-218	ENST00000513284	SMCHD1	A6NHR9	2005 aa		13.81	□□□□□ -0.2
RNF4-218	ENST00000513284	SPDYE16	A6NNV3	312 aa	Predicted RBP	13.81	□□□□□ -0.2
RNF4-218	ENST00000513284	GRXCR1	A8MXD5	290 aa		13.81	□□□□□ -0.2
RNF4-218	ENST00000513284	ANP32C	O43423	234 aa		13.81	□□□□□ -0.2
RNF4-218	ENST00000513284	MYCN	P04198	464 aa	Predicted RBP	13.81	□□□□□ -0.2
RNF4-218	ENST00000513284	UBTFL1	P0CB47	393 aa	Predicted RBP	13.81	□□□□□ -0.2
RNF4-218	ENST00000513284	ADORA2A	P29274	412 aa		13.81	□□□□□ -0.2
RNF4-218	ENST00000513284	MCAM	P43121	646 aa		13.81	□□□□□ -0.2
RNF4-218	ENST00000513284	MVP	Q14764	893 aa	Known RBP	13.81	□□□□□ -0.2
RNF4-218	ENST00000513284	FAM47A	Q5JRC9	791 aa		13.81	□□□□□ -0.2
RNF4-218	ENST00000513284	NEUROD6	Q96NK8	337 aa		13.81	□□□□□ -0.2
RNF4-218	ENST00000513284	MOV10L1	Q9BXT6	1211 aa	Known RBP	13.81	□□□□□ -0.2
RNF4-218	ENST00000513284	SAP30BP	Q9UHR5	308 aa	Known RBP	13.81	□□□□□ -0.2
RNF4-218	ENST00000513284	PHF24	Q9UPV7	400 aa		13.81	□□□□□ -0.2
RNF4-218	ENST00000513284	ZNF521	Q96K83	1311 aa		13.81	□□□□□ -0.2
RNF4-218	ENST00000513284	NCOR1	O75376	2440 aa		13.8	□□□□□ -0.2
RNF4-218	ENST00000513284	CLTB	P09497	229 aa		13.8	□□□□□ -0.2
RNF4-218	ENST00000513284	VCAM1	P19320	739 aa		13.8	□□□□□ -0.2
RNF4-218	ENST00000513284	ARID4A	P29374	1257 aa	Predicted RBP	13.8	□□□□□ -0.2
RNF4-218	ENST00000513284	FAAP100	Q0VG06	881 aa		13.8	□□□□□ -0.2
RNF4-218	ENST00000513284	TATDN1	Q6P1N9	297 aa		13.8	□□□□□ -0.2
RNF4-218	ENST00000513284	DPP9	Q86TI2	863 aa		13.8	□□□□□ -0.2
RNF4-218	ENST00000513284	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	13.8	□□□□□ -0.2
RNF4-218	ENST00000513284	TIFA	Q96CG3	184 aa		13.8	□□□□□ -0.2
RNF4-218	ENST00000513284	NECAB3	Q96P71	396 aa	Predicted RBP	13.8	□□□□□ -0.2
RNF4-218	ENST00000513284	KIAA1683	Q9H0B3	1180 aa		13.8	□□□□□ -0.2
RNF4-218	ENST00000513284	PRDM12	Q9H4Q4	367 aa		13.8	□□□□□ -0.2
RNF4-218	ENST00000513284	MRS2	Q9HD23	443 aa		13.8	□□□□□ -0.2
RNF4-218	ENST00000513284	IVNS1ABP	Q9Y6Y0	642 aa		13.8	□□□□□ -0.2
RNF4-218	ENST00000513284	CDK5RAP2	Q96SN8	1893 aa		13.79	□□□□□ -0.2
RNF4-218	ENST00000513284	RAG1	P15918	1043 aa		13.79	□□□□□ -0.2
RNF4-218	ENST00000513284	GUCY1A2	P33402	732 aa		13.79	□□□□□ -0.2
RNF4-218	ENST00000513284	MRPS5	P82675	430 aa	Known RBP	13.79	□□□□□ -0.2
RNF4-218	ENST00000513284	AKNAD1	Q5T1N1	836 aa		13.79	□□□□□ -0.2
RNF4-218	ENST00000513284	UHRF1	Q96T88	793 aa	Predicted RBP	13.79	□□□□□ -0.2
RNF4-218	ENST00000513284	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	13.79	□□□□□ -0.2	2e-7	■■■□□ 16.9
RNF4-218	ENST00000513284	PBX4	Q9BYU1	374 aa		13.79	□□□□□ -0.2
RNF4-218	ENST00000513284	LRP2BP	Q9P2M1	347 aa		13.79	□□□□□ -0.2
RNF4-218	ENST00000513284	AKAP2	Q9Y2D5	859 aa		13.79	□□□□□ -0.2
RNF4-218	ENST00000513284	STRN	O43815	780 aa		13.78	□□□□□ -0.2
RNF4-218	ENST00000513284	BMP1	P13497	986 aa		13.78	□□□□□ -0.2
RNF4-218	ENST00000513284	DYNLL1	P63167	89 aa	Known RBP	13.78	□□□□□ -0.2
RNF4-218	ENST00000513284	FPGS	Q05932	587 aa		13.78	□□□□□ -0.2
RNF4-218	ENST00000513284	CCDC85B	Q15834	202 aa	Predicted RBP	13.78	□□□□□ -0.2
RNF4-218	ENST00000513284	RASIP1	Q5U651	963 aa		13.78	□□□□□ -0.2
RNF4-218	ENST00000513284	RPAP3	Q9H6T3	665 aa	Predicted RBP	13.78	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms