RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 HMMRO75330 724 aa13.55□□□□□ -0.24
LIMCH1-214ENST00000512228 POLR3DP05423 398 aaPredicted RBP13.55□□□□□ -0.24
LIMCH1-214ENST00000512228 MNX1P50219 401 aaPredicted RBP13.55□□□□□ -0.24
LIMCH1-214ENST00000512228 UBXN2AP68543 259 aa13.55□□□□□ -0.24
LIMCH1-214ENST00000512228 IRX3P78415 501 aaPredicted RBP13.55□□□□□ -0.24
LIMCH1-214ENST00000512228 PABPC4Q13310 644 aaKnown RBP eCLIP13.55□□□□□ -0.24
LIMCH1-214ENST00000512228 PDE3AQ14432 1141 aa13.55□□□□□ -0.24
LIMCH1-214ENST00000512228 ABCB5Q2M3G0 1257 aa13.55□□□□□ -0.24
LIMCH1-214ENST00000512228 CLEC10AQ8IUN9 316 aa13.55□□□□□ -0.24
LIMCH1-214ENST00000512228 GPRC5AQ8NFJ5 357 aa13.55□□□□□ -0.24
LIMCH1-214ENST00000512228 TRIB2Q92519 343 aa13.55□□□□□ -0.24
LIMCH1-214ENST00000512228 USP6NLQ92738 828 aa13.55□□□□□ -0.24
LIMCH1-214ENST00000512228 CRISPLD2Q9H0B8 497 aa13.55□□□□□ -0.24
LIMCH1-214ENST00000512228 GINM1Q9NU53 330 aa13.55□□□□□ -0.24
LIMCH1-214ENST00000512228 PCDH10Q9P2E7 1040 aa13.55□□□□□ -0.24
LIMCH1-214ENST00000512228 MYH7P12883 1935 aa13.54□□□□□ -0.24
LIMCH1-214ENST00000512228 MBD4O95243 580 aa13.54□□□□□ -0.24
LIMCH1-214ENST00000512228 CCL14Q16627 93 aa13.54□□□□□ -0.24
LIMCH1-214ENST00000512228 TSHZ3Q63HK5 1081 aa13.54□□□□□ -0.24
LIMCH1-214ENST00000512228 CATSPERGQ6ZRH7 1159 aa13.54□□□□□ -0.24
LIMCH1-214ENST00000512228 DIS3LQ8TF46 1054 aaKnown RBP13.54□□□□□ -0.24
LIMCH1-214ENST00000512228 DPF3Q92784 378 aa13.54□□□□□ -0.24
LIMCH1-214ENST00000512228 C12orf42Q96LP6 360 aa13.54□□□□□ -0.24
LIMCH1-214ENST00000512228 PUS7LQ9H0K6 701 aaKnown RBP13.54□□□□□ -0.24
LIMCH1-214ENST00000512228 DCTPP1Q9H773 170 aa13.54□□□□□ -0.24
LIMCH1-214ENST00000512228 BTBD7Q9P203 1132 aa13.54□□□□□ -0.24
LIMCH1-214ENST00000512228 PCDHB15Q9Y5E8 787 aa13.54□□□□□ -0.24
LIMCH1-214ENST00000512228 TFRCP02786 760 aaKnown RBP13.53□□□□□ -0.24
LIMCH1-214ENST00000512228 VCAM1P19320 739 aa13.53□□□□□ -0.24
LIMCH1-214ENST00000512228 ERVK-9P63128 1117 aa13.53□□□□□ -0.24
LIMCH1-214ENST00000512228 ERVK-24P63145 666 aa13.53□□□□□ -0.24
LIMCH1-214ENST00000512228 PAGR1Q9BTK6 254 aa13.53□□□□□ -0.24
LIMCH1-214ENST00000512228 CRNKL1Q9BZJ0 848 aaKnown RBP13.53□□□□□ -0.24
LIMCH1-214ENST00000512228 KIAA1683Q9H0B3 1180 aa13.53□□□□□ -0.24
LIMCH1-214ENST00000512228 USP17L12C9JPN9 530 aa13.52□□□□□ -0.25
LIMCH1-214ENST00000512228 USP17L21D6R901 530 aa13.52□□□□□ -0.25
LIMCH1-214ENST00000512228 FARP2O94887 1054 aaPredicted RBP13.52□□□□□ -0.25
LIMCH1-214ENST00000512228 AKR1B1P15121 316 aa13.52□□□□□ -0.25
LIMCH1-214ENST00000512228 MORN1Q5T089 497 aa13.52□□□□□ -0.25
LIMCH1-214ENST00000512228 GPR142Q7Z601 462 aa13.52□□□□□ -0.25
LIMCH1-214ENST00000512228 NKX2-3Q8TAU0 364 aa13.52□□□□□ -0.25
LIMCH1-214ENST00000512228 OTUD7AQ8TE49 926 aaPredicted RBP13.52□□□□□ -0.25
LIMCH1-214ENST00000512228 PAWRQ96IZ0 340 aaKnown RBP13.52□□□□□ -0.25
LIMCH1-214ENST00000512228 LRRCC1Q9C099 1032 aa13.52□□□□□ -0.25
LIMCH1-214ENST00000512228 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.52□□□□□ -0.25
LIMCH1-214ENST00000512228 FLRT1Q9NZU1 646 aa13.52□□□□□ -0.25
LIMCH1-214ENST00000512228 MYH8P13535 1937 aa13.51□□□□□ -0.25
LIMCH1-214ENST00000512228 USP17L15C9J2P7 530 aa13.51□□□□□ -0.25
LIMCH1-214ENST00000512228 USP17L13C9JLJ4 530 aa13.51□□□□□ -0.25
LIMCH1-214ENST00000512228 USP17L11C9JVI0 530 aa13.51□□□□□ -0.25
LIMCH1-214ENST00000512228 USP17L18D6R9N7 530 aa13.51□□□□□ -0.25
LIMCH1-214ENST00000512228 USP17L22D6RA61 530 aa13.51□□□□□ -0.25
LIMCH1-214ENST00000512228 USP17L17D6RBQ6 530 aa13.51□□□□□ -0.25
LIMCH1-214ENST00000512228 USP17L19D6RCP7 530 aa13.51□□□□□ -0.25
LIMCH1-214ENST00000512228 USP17L20D6RJB6 530 aa13.51□□□□□ -0.25
LIMCH1-214ENST00000512228 FXR1P51114 621 aaKnown RBP eCLIP13.51□□□□□ -0.25
LIMCH1-214ENST00000512228 USP17L24Q0WX57 530 aa13.51□□□□□ -0.25
LIMCH1-214ENST00000512228 MAP3K21Q5TCX8 1036 aa13.51□□□□□ -0.25
LIMCH1-214ENST00000512228 C12orf60Q5U649 245 aa13.51□□□□□ -0.25
LIMCH1-214ENST00000512228 TMED8Q6PL24 325 aaPredicted RBP13.51□□□□□ -0.25
LIMCH1-214ENST00000512228 CERS3Q8IU89 383 aa13.51□□□□□ -0.25
LIMCH1-214ENST00000512228 FEZ1Q99689 392 aa13.51□□□□□ -0.25
LIMCH1-214ENST00000512228 RPAP3Q9H6T3 665 aaPredicted RBP13.51□□□□□ -0.25
LIMCH1-214ENST00000512228 SPDYE16A6NNV3 312 aaPredicted RBP13.5□□□□□ -0.25
LIMCH1-214ENST00000512228 MPHOSPH10O00566 681 aaKnown RBP13.5□□□□□ -0.25
LIMCH1-214ENST00000512228 HMGCRP04035 888 aa13.5□□□□□ -0.25
LIMCH1-214ENST00000512228 CCND3P30281 292 aaPredicted RBP13.5□□□□□ -0.25
LIMCH1-214ENST00000512228 CDK8P49336 464 aa13.5□□□□□ -0.25
LIMCH1-214ENST00000512228 CACNB2Q08289 660 aaPredicted RBP13.5□□□□□ -0.25
LIMCH1-214ENST00000512228 UBE3CQ15386 1083 aa13.5□□□□□ -0.25
LIMCH1-214ENST00000512228 CTR9Q6PD62 1173 aa13.5□□□□□ -0.25
LIMCH1-214ENST00000512228 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.5□□□□□ -0.25
LIMCH1-214ENST00000512228 CABP5Q9NP86 173 aa13.5□□□□□ -0.25
LIMCH1-214ENST00000512228 RBM27Q9P2N5 1060 aaKnown RBP13.5□□□□□ -0.25
LIMCH1-214ENST00000512228 ZNFX1Q9P2E3 1918 aaKnown RBP13.49□□□□□ -0.25
LIMCH1-214ENST00000512228 RPTORQ8N122 1335 aa13.49□□□□□ -0.25
LIMCH1-214ENST00000512228 PARP14Q460N5 1801 aa13.49□□□□□ -0.25
LIMCH1-214ENST00000512228 XRCC5P13010 732 aaKnown RBP13.49□□□□□ -0.25
LIMCH1-214ENST00000512228 CHRDL2Q6WN34 429 aa13.49□□□□□ -0.25
LIMCH1-214ENST00000512228 PLEKHH3Q7Z736 793 aa13.49□□□□□ -0.25
LIMCH1-214ENST00000512228 STK11IPQ8N1F8 1099 aa13.49□□□□□ -0.25
LIMCH1-214ENST00000512228 NPLOC4Q8TAT6 608 aa13.49□□□□□ -0.25
LIMCH1-214ENST00000512228 OSBP2Q969R2 916 aa13.49□□□□□ -0.25
LIMCH1-214ENST00000512228 STRBPQ96SI9 672 aaKnown RBP13.49□□□□□ -0.25
LIMCH1-214ENST00000512228 NUDT12Q9BQG2 462 aa13.49□□□□□ -0.25
LIMCH1-214ENST00000512228 PRO3102Q9H379 93 aa13.49□□□□□ -0.25
LIMCH1-214ENST00000512228 ECHDC1Q9NTX5 307 aa13.49□□□□□ -0.25
LIMCH1-214ENST00000512228 RABGAP1Q9Y3P9 1069 aa13.49□□□□□ -0.25
LIMCH1-214ENST00000512228 SLC4A4Q9Y6R1 1079 aa13.49□□□□□ -0.25
LIMCH1-214ENST00000512228 GSG1L2A8MUP6 293 aa13.48□□□□□ -0.25
LIMCH1-214ENST00000512228 IGHA2P01877 340 aa13.48□□□□□ -0.25
LIMCH1-214ENST00000512228 PRKAR2AP13861 404 aaKnown RBP13.48□□□□□ -0.25
LIMCH1-214ENST00000512228 MAPK4P31152 587 aa13.48□□□□□ -0.25
LIMCH1-214ENST00000512228 USP14P54578 494 aa13.48□□□□□ -0.25
LIMCH1-214ENST00000512228 LHX8Q68G74 356 aa13.48□□□□□ -0.25
LIMCH1-214ENST00000512228 SPICE1Q8N0Z3 855 aa13.48□□□□□ -0.25
LIMCH1-214ENST00000512228 GCC1Q96CN9 775 aa13.48□□□□□ -0.25
LIMCH1-214ENST00000512228 CHMP4BQ9H444 224 aaKnown RBP13.48□□□□□ -0.25
LIMCH1-214ENST00000512228 HMX1Q9NP08 348 aaPredicted RBP13.48□□□□□ -0.25
LIMCH1-214ENST00000512228 ATP8A2Q9NTI2 1148 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms