RNA–Protein interactions for RNA: ENST00000511426.5

SCLT1-209, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 1,696 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-209ENST00000511426 ALG1Q9BT22 464 aa17.67■□□□□ 0.42
SCLT1-209ENST00000511426 TRIM34Q9BYJ4 488 aa17.67■□□□□ 0.42
SCLT1-209ENST00000511426 FHDC1Q9C0D6 1143 aaPredicted RBP17.67■□□□□ 0.42
SCLT1-209ENST00000511426 IGKV6D-41A0A0C4DH26 115 aa17.66■□□□□ 0.42
SCLT1-209ENST00000511426 TRAK2O60296 914 aa17.66■□□□□ 0.42
SCLT1-209ENST00000511426 MBD3O95983 291 aa17.66■□□□□ 0.42
SCLT1-209ENST00000511426 SHMT1P34896 483 aa17.66■□□□□ 0.42
SCLT1-209ENST00000511426 FOXD4L5Q5VV16 416 aaPredicted RBP17.66■□□□□ 0.42
SCLT1-209ENST00000511426 TMTC3Q6ZXV5 915 aa17.66■□□□□ 0.42
SCLT1-209ENST00000511426 NBPF11Q86T75 865 aa17.66■□□□□ 0.42
SCLT1-209ENST00000511426 RAB11FIP4Q86YS3 637 aa17.66■□□□□ 0.42
SCLT1-209ENST00000511426 FOXD4L4Q8WXT5 416 aaPredicted RBP17.66■□□□□ 0.42
SCLT1-209ENST00000511426 SCAND2PQ9GZW5 306 aaPredicted RBP17.66■□□□□ 0.42
SCLT1-209ENST00000511426 ZNF70Q9UC06 446 aaPredicted RBP17.66■□□□□ 0.42
SCLT1-209ENST00000511426 ZBTB12Q9Y330 459 aaPredicted RBP17.66■□□□□ 0.42
SCLT1-209ENST00000511426 ELP1O95163 1332 aa17.65■□□□□ 0.42
SCLT1-209ENST00000511426 PRPF3O43395 683 aaKnown RBP17.65■□□□□ 0.42
SCLT1-209ENST00000511426 NMT2O60551 498 aa17.65■□□□□ 0.42
SCLT1-209ENST00000511426 SMARCA1P28370 1054 aa17.65■□□□□ 0.42
SCLT1-209ENST00000511426 TNFAIP1Q13829 316 aa17.65■□□□□ 0.42
SCLT1-209ENST00000511426 KLHL40Q2TBA0 621 aa17.65■□□□□ 0.42
SCLT1-209ENST00000511426 TATDN1Q6P1N9 297 aa17.65■□□□□ 0.42
SCLT1-209ENST00000511426 ZSCAN29Q8IWY8 852 aaPredicted RBP17.65■□□□□ 0.42
SCLT1-209ENST00000511426 CCDC144CPQ8IYA2 1237 aa17.65■□□□□ 0.42
SCLT1-209ENST00000511426 SLC26A6Q9BXS9 759 aa17.65■□□□□ 0.42
SCLT1-209ENST00000511426 MYOZ2Q9NPC6 264 aa17.65■□□□□ 0.42
SCLT1-209ENST00000511426 LMBRD1Q9NUN5 540 aa17.65■□□□□ 0.42
SCLT1-209ENST00000511426 CFAP45Q9UL16 551 aa17.65■□□□□ 0.42
SCLT1-209ENST00000511426 SYNPO2Q9UMS6 1093 aa17.65■□□□□ 0.42
SCLT1-209ENST00000511426 STX8Q9UNK0 236 aa17.65■□□□□ 0.42
SCLT1-209ENST00000511426 TNNI2P48788 182 aa17.64■□□□□ 0.42
SCLT1-209ENST00000511426 RASSF7Q02833 373 aa17.64■□□□□ 0.42
SCLT1-209ENST00000511426 FUT2Q10981 343 aa17.64■□□□□ 0.42
SCLT1-209ENST00000511426 GRM4Q14833 912 aa17.64■□□□□ 0.42
SCLT1-209ENST00000511426 CEP95Q96GE4 821 aa17.64■□□□□ 0.42
SCLT1-209ENST00000511426 TMEM47Q9BQJ4 181 aa17.64■□□□□ 0.42
SCLT1-209ENST00000511426 MTMR4Q9NYA4 1195 aa17.64■□□□□ 0.42
SCLT1-209ENST00000511426 DDTLA6NHG4 134 aaPredicted RBP17.64■□□□□ 0.41
SCLT1-209ENST00000511426 TTLL1O95922 423 aa17.64■□□□□ 0.41
SCLT1-209ENST00000511426 NCLP19338 710 aaKnown RBP17.64■□□□□ 0.41
SCLT1-209ENST00000511426 TCP10Q12799 353 aa17.64■□□□□ 0.41
SCLT1-209ENST00000511426 PHKBQ93100 1093 aa17.64■□□□□ 0.41
SCLT1-209ENST00000511426 PCDHAC2Q9Y5I4 1007 aa17.64■□□□□ 0.41
SCLT1-209ENST00000511426 GREB1LQ9C091 1923 aaPredicted RBP17.64■□□□□ 0.41
SCLT1-209ENST00000511426 WNT10BO00744 389 aa17.63■□□□□ 0.41
SCLT1-209ENST00000511426 TBC1D12O60347 775 aa17.63■□□□□ 0.41
SCLT1-209ENST00000511426 SH3BP5LQ7L8J4 393 aa17.63■□□□□ 0.41
SCLT1-209ENST00000511426 ZNF396Q96N95 335 aaPredicted RBP17.63■□□□□ 0.41
SCLT1-209ENST00000511426 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.63■□□□□ 0.41
SCLT1-209ENST00000511426 CACNB3P54284 484 aa17.62■□□□□ 0.41
SCLT1-209ENST00000511426 SAFBQ15424 915 aaKnown RBP eCLIP17.62■□□□□ 0.41
SCLT1-209ENST00000511426 CERKLQ49MI3 558 aaPredicted RBP17.62■□□□□ 0.41
SCLT1-209ENST00000511426 TMEM179Q6ZVK1 233 aa17.62■□□□□ 0.41
SCLT1-209ENST00000511426 ZFPM1Q8IX07 1006 aa17.62■□□□□ 0.41
SCLT1-209ENST00000511426 CSRNP1Q96S65 589 aa17.62■□□□□ 0.41
SCLT1-209ENST00000511426 SYT17Q9BSW7 474 aa17.62■□□□□ 0.41
SCLT1-209ENST00000511426 MYH8P13535 1937 aa17.62■□□□□ 0.41
SCLT1-209ENST00000511426 SIPA1L1O43166 1804 aa17.62■□□□□ 0.41
SCLT1-209ENST00000511426 CNTNAP5Q8WYK1 1306 aa17.62■□□□□ 0.41
SCLT1-209ENST00000511426 PRPF40AO75400 957 aaKnown RBP17.61■□□□□ 0.41
SCLT1-209ENST00000511426 AKR1B1P15121 316 aa17.61■□□□□ 0.41
SCLT1-209ENST00000511426 DNM1Q05193 864 aaKnown RBP17.61■□□□□ 0.41
SCLT1-209ENST00000511426 FERMT3Q86UX7 667 aa17.61■□□□□ 0.41
SCLT1-209ENST00000511426 GPC2Q8N158 579 aa17.61■□□□□ 0.41
SCLT1-209ENST00000511426 DNAJC18Q9H819 358 aa17.61■□□□□ 0.41
SCLT1-209ENST00000511426 KANSL2Q9H9L4 492 aa17.61■□□□□ 0.41
SCLT1-209ENST00000511426 DDX49Q9Y6V7 483 aaKnown RBP17.61■□□□□ 0.41
SCLT1-209ENST00000511426 DICER1Q9UPY3 1922 aaKnown RBP17.61■□□□□ 0.41
SCLT1-209ENST00000511426 PALM3A6NDB9 673 aaPredicted RBP17.61■□□□□ 0.41
SCLT1-209ENST00000511426 UBE2HP62256 183 aa17.61■□□□□ 0.41
SCLT1-209ENST00000511426 ASPRV1Q53RT3 343 aa17.61■□□□□ 0.41
SCLT1-209ENST00000511426 KRT40Q6A162 431 aa17.61■□□□□ 0.41
SCLT1-209ENST00000511426 SPZ1Q9BXG8 430 aa17.61■□□□□ 0.41
SCLT1-209ENST00000511426 NYAP2Q9P242 653 aa17.61■□□□□ 0.41
SCLT1-209ENST00000511426 CNTNAP1P78357 1384 aa17.6■□□□□ 0.41
SCLT1-209ENST00000511426 SNHG28P0DPA3 235 aa17.6■□□□□ 0.41
SCLT1-209ENST00000511426 GMPSP49915 693 aaPredicted RBP17.6■□□□□ 0.41
SCLT1-209ENST00000511426 PRELPP51888 382 aa17.6■□□□□ 0.41
SCLT1-209ENST00000511426 KIF23Q02241 960 aaPredicted RBP17.6■□□□□ 0.41
SCLT1-209ENST00000511426 ARHGAP27Q6ZUM4 889 aa17.6■□□□□ 0.41
SCLT1-209ENST00000511426 MKL1Q969V6 931 aa17.6■□□□□ 0.41
SCLT1-209ENST00000511426 SH3GLB2Q9NR46 395 aa17.6■□□□□ 0.41
SCLT1-209ENST00000511426 CLRN2A0PK11 232 aa17.59■□□□□ 0.41
SCLT1-209ENST00000511426 TCP10L2B9ZVM9 353 aa17.59■□□□□ 0.41
SCLT1-209ENST00000511426 MMP1P03956 469 aa17.59■□□□□ 0.41
SCLT1-209ENST00000511426 PARP1P09874 1014 aaKnown RBP17.59■□□□□ 0.41
SCLT1-209ENST00000511426 U2AF2P26368 475 aaKnown RBP eCLIP17.59■□□□□ 0.41
SCLT1-209ENST00000511426 MAP3K10Q02779 954 aa17.59■□□□□ 0.41
SCLT1-209ENST00000511426 FOXP1Q9H334 677 aaPredicted RBP17.59■□□□□ 0.41
SCLT1-209ENST00000511426 CABP5Q9NP86 173 aa17.59■□□□□ 0.41
SCLT1-209ENST00000511426 MAD2L2Q9UI95 211 aa17.59■□□□□ 0.41
SCLT1-209ENST00000511426 CNPY2Q9Y2B0 182 aa17.59■□□□□ 0.41
SCLT1-209ENST00000511426 H7C1D1 291 aa17.58■□□□□ 0.41
SCLT1-209ENST00000511426 DTNBO60941 627 aa17.58■□□□□ 0.41
SCLT1-209ENST00000511426 PLEKHA8P1O95397 391 aa17.58■□□□□ 0.41
SCLT1-209ENST00000511426 GPATCH4Q5T3I0 446 aaKnown RBP17.58■□□□□ 0.41
SCLT1-209ENST00000511426 USP48Q86UV5 1035 aa17.58■□□□□ 0.41
SCLT1-209ENST00000511426 MICALL2Q8IY33 904 aa17.58■□□□□ 0.41
SCLT1-209ENST00000511426 SRBD1Q8N5C6 995 aaKnown RBP17.58■□□□□ 0.41
SCLT1-209ENST00000511426 BRMS1Q9HCU9 246 aa17.58■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms