RNA–Protein interactions for RNA: ENST00000508171.5

LIN54-207, Transcript of lin-54 DREAM MuvB core complex component, humanhuman

TSL 1 (best)

Gene LIN54, Length 2,684 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIN54-207ENST00000508171 SMARCC1Q92922 1105 aaPredicted RBP12.5□□□□□ -0.41
LIN54-207ENST00000508171 DHX58Q96C10 678 aa12.5□□□□□ -0.41
LIN54-207ENST00000508171 PKNOX2Q96KN3 472 aa12.5□□□□□ -0.41
LIN54-207ENST00000508171 TMX1Q9H3N1 280 aa12.5□□□□□ -0.41
LIN54-207ENST00000508171 CEP131Q9UPN4 1083 aa12.5□□□□□ -0.41
LIN54-207ENST00000508171 COL5A3P25940 1745 aaPredicted RBP12.5□□□□□ -0.41
LIN54-207ENST00000508171 FGRP09769 529 aa12.49□□□□□ -0.41
LIN54-207ENST00000508171 PRDX5P30044 214 aa12.49□□□□□ -0.41
LIN54-207ENST00000508171 KRT2P35908 639 aa12.49□□□□□ -0.41
LIN54-207ENST00000508171 AFMP43652 599 aa12.49□□□□□ -0.41
LIN54-207ENST00000508171 RPS8P62241 208 aaKnown RBP12.49□□□□□ -0.41
LIN54-207ENST00000508171 PPP2R5BQ15173 497 aa12.49□□□□□ -0.41
LIN54-207ENST00000508171 SAMSN1Q9NSI8 373 aaKnown RBP12.49□□□□□ -0.41
LIN54-207ENST00000508171 NPHP1O15259 732 aa12.49□□□□□ -0.41
LIN54-207ENST00000508171 CYP2D6P10635 497 aa12.49□□□□□ -0.41
LIN54-207ENST00000508171 XBP1P17861 261 aa12.49□□□□□ -0.41
LIN54-207ENST00000508171 CDK11BP21127 795 aaKnown RBP12.49□□□□□ -0.41
LIN54-207ENST00000508171 KCNJ6P48051 423 aa12.49□□□□□ -0.41
LIN54-207ENST00000508171 ZNF174Q15697 407 aa12.49□□□□□ -0.41
LIN54-207ENST00000508171 NPY5RQ15761 445 aa12.49□□□□□ -0.41
LIN54-207ENST00000508171 TXNRD3Q86VQ6 643 aa12.49□□□□□ -0.41
LIN54-207ENST00000508171 SRBD1Q8N5C6 995 aaKnown RBP12.49□□□□□ -0.41
LIN54-207ENST00000508171 SRP68Q9UHB9 627 aaKnown RBP12.49□□□□□ -0.41
LIN54-207ENST00000508171 ADAMTS3O15072 1205 aa12.48□□□□□ -0.41
LIN54-207ENST00000508171 ZNF18P17022 549 aa12.48□□□□□ -0.41
LIN54-207ENST00000508171 FAM98CQ17RN3 349 aaKnown RBP12.48□□□□□ -0.41
LIN54-207ENST00000508171 MLKLQ8NB16 471 aa12.48□□□□□ -0.41
LIN54-207ENST00000508171 LRRN4CLQ8ND94 238 aa12.48□□□□□ -0.41
LIN54-207ENST00000508171 SPATA20Q8TB22 786 aa12.48□□□□□ -0.41
LIN54-207ENST00000508171 DCP1AQ9NPI6 582 aaPredicted RBP12.48□□□□□ -0.41
LIN54-207ENST00000508171 NRDCO43847 1150 aa12.48□□□□□ -0.41
LIN54-207ENST00000508171 SLC51AQ86UW1 340 aa12.48□□□□□ -0.41
LIN54-207ENST00000508171 HOMER1Q86YM7 354 aa12.48□□□□□ -0.41
LIN54-207ENST00000508171 SYMPKQ92797 1274 aaKnown RBP12.48□□□□□ -0.41
LIN54-207ENST00000508171 KIF2AO00139 706 aaPredicted RBP12.47□□□□□ -0.41
LIN54-207ENST00000508171 HIBADHP31937 336 aaKnown RBP12.47□□□□□ -0.41
LIN54-207ENST00000508171 ADKP55263 362 aaKnown RBP12.47□□□□□ -0.41
LIN54-207ENST00000508171 SLC10A5Q5PT55 438 aa12.47□□□□□ -0.41
LIN54-207ENST00000508171 BARGINQ6ZT62 677 aa12.47□□□□□ -0.41
LIN54-207ENST00000508171 TMTC3Q6ZXV5 915 aa12.47□□□□□ -0.41
LIN54-207ENST00000508171 TMEM139Q8IV31 216 aa12.47□□□□□ -0.41
LIN54-207ENST00000508171 ENOX1Q8TC92 643 aaKnown RBP12.47□□□□□ -0.41
LIN54-207ENST00000508171 STAMQ92783 540 aa12.47□□□□□ -0.41
LIN54-207ENST00000508171 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.47□□□□□ -0.41
LIN54-207ENST00000508171 SCN7AQ01118 1682 aa12.47□□□□□ -0.41
LIN54-207ENST00000508171 FANCGO15287 622 aa12.47□□□□□ -0.41
LIN54-207ENST00000508171 SLU7O95391 586 aaKnown RBP12.47□□□□□ -0.41
LIN54-207ENST00000508171 DHX8Q14562 1220 aaKnown RBP12.47□□□□□ -0.41
LIN54-207ENST00000508171 ELF2Q15723 593 aa12.47□□□□□ -0.41
LIN54-207ENST00000508171 KANK3Q6NY19 840 aa12.47□□□□□ -0.41
LIN54-207ENST00000508171 TNFRSF25Q93038 417 aa12.47□□□□□ -0.41
LIN54-207ENST00000508171 MYO1BO43795 1136 aa12.46□□□□□ -0.41
LIN54-207ENST00000508171 CD44P16070 742 aaKnown RBP12.46□□□□□ -0.41
LIN54-207ENST00000508171 TBX2Q13207 712 aaPredicted RBP12.46□□□□□ -0.41
LIN54-207ENST00000508171 PTGDRQ13258 359 aa12.46□□□□□ -0.41
LIN54-207ENST00000508171 KLHL10Q6JEL2 608 aa12.46□□□□□ -0.41
LIN54-207ENST00000508171 TRIM65Q6PJ69 517 aa12.46□□□□□ -0.41
LIN54-207ENST00000508171 REXO1L1PQ8IX06 675 aa12.46□□□□□ -0.41
LIN54-207ENST00000508171 SMYD4Q8IYR2 804 aaPredicted RBP12.46□□□□□ -0.41
LIN54-207ENST00000508171 PAGE5Q96GU1 130 aa12.46□□□□□ -0.41
LIN54-207ENST00000508171 ERO1AQ96HE7 468 aa12.46□□□□□ -0.41
LIN54-207ENST00000508171 NLRP3Q96P20 1036 aa12.46□□□□□ -0.41
LIN54-207ENST00000508171 L2HGDHQ9H9P8 463 aa12.46□□□□□ -0.41
LIN54-207ENST00000508171 RBM28Q9NW13 759 aaKnown RBP12.46□□□□□ -0.41
LIN54-207ENST00000508171 CGNQ9P2M7 1197 aaKnown RBP12.46□□□□□ -0.41
LIN54-207ENST00000508171 DNAI1Q9UI46 699 aa12.46□□□□□ -0.41
LIN54-207ENST00000508171 CNTNAP5Q8WYK1 1306 aa12.46□□□□□ -0.41
LIN54-207ENST00000508171 VWA3AA6NCI4 1184 aa12.46□□□□□ -0.41
LIN54-207ENST00000508171 STX17P56962 302 aa12.46□□□□□ -0.41
LIN54-207ENST00000508171 ETF1P62495 437 aaKnown RBP12.46□□□□□ -0.41
LIN54-207ENST00000508171 KMT5BQ4FZB7 885 aa12.46□□□□□ -0.41
LIN54-207ENST00000508171 CCDC93Q567U6 631 aa12.46□□□□□ -0.41
LIN54-207ENST00000508171 AMIGO3Q86WK7 504 aa12.46□□□□□ -0.41
LIN54-207ENST00000508171 NBPF5PQ86XG9 351 aaPredicted RBP12.46□□□□□ -0.41
LIN54-207ENST00000508171 SETDB2Q96T68 719 aa12.46□□□□□ -0.41
LIN54-207ENST00000508171 DLEC1Q9Y238 1755 aa12.46□□□□□ -0.41
LIN54-207ENST00000508171 SLFN14P0C7P3 912 aa12.45□□□□□ -0.42
LIN54-207ENST00000508171 CALM1P0DP23 149 aa12.45□□□□□ -0.42
LIN54-207ENST00000508171 CALM2P0DP24 149 aa12.45□□□□□ -0.42
LIN54-207ENST00000508171 CALM3P0DP25 149 aa12.45□□□□□ -0.42
LIN54-207ENST00000508171 SMAP1Q8IYB5 467 aaPredicted RBP12.45□□□□□ -0.42
LIN54-207ENST00000508171 TC2NQ8N9U0 490 aa12.45□□□□□ -0.42
LIN54-207ENST00000508171 TRIML1Q8N9V2 468 aa12.45□□□□□ -0.42
LIN54-207ENST00000508171 CRNKL1Q9BZJ0 848 aaKnown RBP12.45□□□□□ -0.42
LIN54-207ENST00000508171 ORC4O43929 436 aa12.45□□□□□ -0.42
LIN54-207ENST00000508171 COBLO75128 1261 aa12.45□□□□□ -0.42
LIN54-207ENST00000508171 DDAH1O94760 285 aa12.45□□□□□ -0.42
LIN54-207ENST00000508171 USP17L8P0C7I0 530 aa12.45□□□□□ -0.42
LIN54-207ENST00000508171 ZSCAN20P17040 1043 aaPredicted RBP12.45□□□□□ -0.42
LIN54-207ENST00000508171 PLCD1P51178 756 aa12.45□□□□□ -0.42
LIN54-207ENST00000508171 ERCC6LQ2NKX8 1250 aa12.45□□□□□ -0.42
LIN54-207ENST00000508171 TTC38Q5R3I4 469 aa12.45□□□□□ -0.42
LIN54-207ENST00000508171 SPECC1LQ69YQ0 1117 aa12.45□□□□□ -0.42
LIN54-207ENST00000508171 PIK3AP1Q6ZUJ8 805 aa12.45□□□□□ -0.42
LIN54-207ENST00000508171 SH3RF1Q7Z6J0 888 aa12.45□□□□□ -0.42
LIN54-207ENST00000508171 FAM177A1Q8N128 213 aaPredicted RBP12.45□□□□□ -0.42
LIN54-207ENST00000508171 CTCFLQ8NI51 663 aaPredicted RBP12.45□□□□□ -0.42
LIN54-207ENST00000508171 DACH1Q9UI36 760 aa12.45□□□□□ -0.42
LIN54-207ENST00000508171 SEMA3EO15041 775 aa12.45□□□□□ -0.42
LIN54-207ENST00000508171 TEX33O43247 280 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms