RNA–Protein interactions for RNA: ENST00000508063.1

PTPN13-207, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

TSL 3

Gene PTPN13, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-207ENST00000508063 GPATCH3Q96I76 525 aa13.38□□□□□ -0.27
PTPN13-207ENST00000508063 C12orf42Q96LP6 360 aa13.38□□□□□ -0.27
PTPN13-207ENST00000508063 P2RX7Q99572 595 aaKnown RBP13.38□□□□□ -0.27
PTPN13-207ENST00000508063 KIAA1683Q9H0B3 1180 aa13.38□□□□□ -0.27
PTPN13-207ENST00000508063 EMILIN3Q9NT22 766 aa13.38□□□□□ -0.27
PTPN13-207ENST00000508063 ATP8A2Q9NTI2 1148 aa13.38□□□□□ -0.27
PTPN13-207ENST00000508063 SWAP70Q9UH65 585 aa13.38□□□□□ -0.27
PTPN13-207ENST00000508063 DDX60LQ5H9U9 1706 aaKnown RBP13.37□□□□□ -0.27
PTPN13-207ENST00000508063 USP17L15C9J2P7 530 aa13.37□□□□□ -0.27
PTPN13-207ENST00000508063 USP17L13C9JLJ4 530 aa13.37□□□□□ -0.27
PTPN13-207ENST00000508063 USP17L11C9JVI0 530 aa13.37□□□□□ -0.27
PTPN13-207ENST00000508063 USP17L18D6R9N7 530 aa13.37□□□□□ -0.27
PTPN13-207ENST00000508063 USP17L22D6RA61 530 aa13.37□□□□□ -0.27
PTPN13-207ENST00000508063 USP17L17D6RBQ6 530 aa13.37□□□□□ -0.27
PTPN13-207ENST00000508063 USP17L19D6RCP7 530 aa13.37□□□□□ -0.27
PTPN13-207ENST00000508063 USP17L20D6RJB6 530 aa13.37□□□□□ -0.27
PTPN13-207ENST00000508063 MAPK4P31152 587 aa13.37□□□□□ -0.27
PTPN13-207ENST00000508063 SHMT1P34896 483 aa13.37□□□□□ -0.27
PTPN13-207ENST00000508063 USP17L24Q0WX57 530 aa13.37□□□□□ -0.27
PTPN13-207ENST00000508063 UBE3CQ15386 1083 aa13.37□□□□□ -0.27
PTPN13-207ENST00000508063 SHROOM1Q2M3G4 852 aaPredicted RBP13.37□□□□□ -0.27
PTPN13-207ENST00000508063 LCORLQ8N3X6 602 aa13.37□□□□□ -0.27
PTPN13-207ENST00000508063 SOCS4Q8WXH5 440 aa13.37□□□□□ -0.27
PTPN13-207ENST00000508063 EDC3Q96F86 508 aaKnown RBP13.37□□□□□ -0.27
PTPN13-207ENST00000508063 HTATIP2Q9BUP3 242 aa13.37□□□□□ -0.27
PTPN13-207ENST00000508063 UNC93B1Q9H1C4 597 aa13.37□□□□□ -0.27
PTPN13-207ENST00000508063 MBD4O95243 580 aa13.36□□□□□ -0.27
PTPN13-207ENST00000508063 SGPL1O95470 568 aa13.36□□□□□ -0.27
PTPN13-207ENST00000508063 HMGCRP04035 888 aa13.36□□□□□ -0.27
PTPN13-207ENST00000508063 GABPAQ06546 454 aa13.36□□□□□ -0.27
PTPN13-207ENST00000508063 ZYXQ15942 572 aaKnown RBP13.36□□□□□ -0.27
PTPN13-207ENST00000508063 TRMT44Q8IYL2 757 aaKnown RBP13.36□□□□□ -0.27
PTPN13-207ENST00000508063 U2AF1L4Q8WU68 220 aaKnown RBP13.36□□□□□ -0.27
PTPN13-207ENST00000508063 SDR42E1Q8WUS8 393 aa13.36□□□□□ -0.27
PTPN13-207ENST00000508063 SHISA4Q96DD7 197 aa13.36□□□□□ -0.27
PTPN13-207ENST00000508063 NUDT12Q9BQG2 462 aa13.36□□□□□ -0.27
PTPN13-207ENST00000508063 ARMT1Q9H993 441 aa13.36□□□□□ -0.27
PTPN13-207ENST00000508063 CWC22Q9HCG8 908 aaKnown RBP13.36□□□□□ -0.27
PTPN13-207ENST00000508063 DCP1AQ9NPI6 582 aaPredicted RBP13.36□□□□□ -0.27
PTPN13-207ENST00000508063 ECHDC1Q9NTX5 307 aa13.36□□□□□ -0.27
PTPN13-207ENST00000508063 DOCK3Q8IZD9 2030 aa13.35□□□□□ -0.27
PTPN13-207ENST00000508063 MYH7P12883 1935 aa13.35□□□□□ -0.27
PTPN13-207ENST00000508063 MPHOSPH10O00566 681 aaKnown RBP13.35□□□□□ -0.27
PTPN13-207ENST00000508063 GLRX3O76003 335 aaKnown RBP13.35□□□□□ -0.27
PTPN13-207ENST00000508063 TFRCP02786 760 aaKnown RBP13.35□□□□□ -0.27
PTPN13-207ENST00000508063 ERVK-9P63128 1117 aa13.35□□□□□ -0.27
PTPN13-207ENST00000508063 ERVK-24P63145 666 aa13.35□□□□□ -0.27
PTPN13-207ENST00000508063 CCNA1P78396 465 aa13.35□□□□□ -0.27
PTPN13-207ENST00000508063 TMEM179Q6ZVK1 233 aa13.35□□□□□ -0.27
PTPN13-207ENST00000508063 DPF3Q92784 378 aa13.35□□□□□ -0.27
PTPN13-207ENST00000508063 PAGR1Q9BTK6 254 aa13.35□□□□□ -0.27
PTPN13-207ENST00000508063 DCTPP1Q9H773 170 aa13.35□□□□□ -0.27
PTPN13-207ENST00000508063 RBPJLQ9UBG7 517 aa13.35□□□□□ -0.27
PTPN13-207ENST00000508063 GJD2Q9UKL4 321 aa13.35□□□□□ -0.27
PTPN13-207ENST00000508063 RABGAP1Q9Y3P9 1069 aa13.35□□□□□ -0.27
PTPN13-207ENST00000508063 SMARCA5O60264 1052 aaPredicted RBP13.34□□□□□ -0.27
PTPN13-207ENST00000508063 FARP2O94887 1054 aaPredicted RBP13.34□□□□□ -0.27
PTPN13-207ENST00000508063 XRCC5P13010 732 aaKnown RBP13.34□□□□□ -0.27
PTPN13-207ENST00000508063 VCAM1P19320 739 aa13.34□□□□□ -0.27
PTPN13-207ENST00000508063 SEPT2Q15019 361 aa13.34□□□□□ -0.27
PTPN13-207ENST00000508063 CATSPERGQ6ZRH7 1159 aa13.34□□□□□ -0.27
PTPN13-207ENST00000508063 ACER1Q8TDN7 264 aa13.34□□□□□ -0.27
PTPN13-207ENST00000508063 CCDC17Q96LX7 622 aa13.34□□□□□ -0.27
PTPN13-207ENST00000508063 DEFB118Q96PH6 123 aa13.34□□□□□ -0.27
PTPN13-207ENST00000508063 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.34□□□□□ -0.27
PTPN13-207ENST00000508063 TXNRD2Q9NNW7 524 aa13.34□□□□□ -0.27
PTPN13-207ENST00000508063 HMX1Q9NP08 348 aaPredicted RBP13.34□□□□□ -0.27
PTPN13-207ENST00000508063 PAK6Q9NQU5 681 aaPredicted RBP13.34□□□□□ -0.27
PTPN13-207ENST00000508063 PRKAR2AP13861 404 aaKnown RBP13.33□□□□□ -0.28
PTPN13-207ENST00000508063 GUCY1A2P33402 732 aa13.33□□□□□ -0.28
PTPN13-207ENST00000508063 RGS2P41220 211 aa13.33□□□□□ -0.28
PTPN13-207ENST00000508063 LRRFIP1Q32MZ4 808 aaKnown RBP13.33□□□□□ -0.28
PTPN13-207ENST00000508063 LBX2Q6XYB7 198 aa13.33□□□□□ -0.28
PTPN13-207ENST00000508063 PLEKHH3Q7Z736 793 aa13.33□□□□□ -0.28
PTPN13-207ENST00000508063 UBE2Q1Q7Z7E8 422 aa13.33□□□□□ -0.28
PTPN13-207ENST00000508063 SH2D4AQ9H788 454 aa13.33□□□□□ -0.28
PTPN13-207ENST00000508063 ARHGEF10LQ9HCE6 1279 aa13.33□□□□□ -0.28
PTPN13-207ENST00000508063 SLC4A4Q9Y6R1 1079 aa13.33□□□□□ -0.28
PTPN13-207ENST00000508063 RPTORQ8N122 1335 aa13.33□□□□□ -0.28
PTPN13-207ENST00000508063 MYH8P13535 1937 aa13.33□□□□□ -0.28
PTPN13-207ENST00000508063 PRKAB2O43741 272 aa13.32□□□□□ -0.28
PTPN13-207ENST00000508063 ZFYP08048 801 aaPredicted RBP13.32□□□□□ -0.28
PTPN13-207ENST00000508063 CYP2D6P10635 497 aa13.32□□□□□ -0.28
PTPN13-207ENST00000508063 CYP2B6P20813 491 aa13.32□□□□□ -0.28
PTPN13-207ENST00000508063 Q3C1V9 767 aa13.32□□□□□ -0.28
PTPN13-207ENST00000508063 C12orf60Q5U649 245 aa13.32□□□□□ -0.28
PTPN13-207ENST00000508063 GPR142Q7Z601 462 aa13.32□□□□□ -0.28
PTPN13-207ENST00000508063 ANKLE1Q8NAG6 615 aa13.32□□□□□ -0.28
PTPN13-207ENST00000508063 CRISPLD2Q9H0B8 497 aa13.32□□□□□ -0.28
PTPN13-207ENST00000508063 RPAP3Q9H6T3 665 aaPredicted RBP13.32□□□□□ -0.28
PTPN13-207ENST00000508063 HOXC10Q9NYD6 342 aa13.32□□□□□ -0.28
PTPN13-207ENST00000508063 NR2E3Q9Y5X4 410 aa13.32□□□□□ -0.28
PTPN13-207ENST00000508063 BAZ2AQ9UIF9 1905 aaKnown RBP13.31□□□□□ -0.28
PTPN13-207ENST00000508063 USP17L12C9JPN9 530 aa13.31□□□□□ -0.28
PTPN13-207ENST00000508063 USP17L21D6R901 530 aa13.31□□□□□ -0.28
PTPN13-207ENST00000508063 ZKSCAN1P17029 563 aaPredicted RBP13.31□□□□□ -0.28
PTPN13-207ENST00000508063 COG2Q14746 738 aa13.31□□□□□ -0.28
PTPN13-207ENST00000508063 SLFNL1Q499Z3 407 aa13.31□□□□□ -0.28
PTPN13-207ENST00000508063 HABP4Q5JVS0 413 aaKnown RBP13.31□□□□□ -0.28
PTPN13-207ENST00000508063 KBTBD3Q8NAB2 608 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms