RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 DHRS1Q96LJ7 313 aa6.14□□□□□ -1.43
HMGB1P28-201ENST00000507778 SRPK1Q96SB4 655 aaKnown RBP6.14□□□□□ -1.43
HMGB1P28-201ENST00000507778 PHAXQ9H814 394 aaKnown RBP6.14□□□□□ -1.43
HMGB1P28-201ENST00000507778 CDK11AQ9UQ88 783 aaPredicted RBP6.14□□□□□ -1.43
HMGB1P28-201ENST00000507778 DDAH1O94760 285 aa6.13□□□□□ -1.43
HMGB1P28-201ENST00000507778 CHMP4BP1P59074 171 aa6.13□□□□□ -1.43
HMGB1P28-201ENST00000507778 SEZ6L2Q6UXD5 910 aa6.13□□□□□ -1.43
HMGB1P28-201ENST00000507778 BEND4Q6ZU67 534 aa6.13□□□□□ -1.43
HMGB1P28-201ENST00000507778 FAM178BQ8IXR5 827 aa6.13□□□□□ -1.43
HMGB1P28-201ENST00000507778 BAHD1Q8TBE0 780 aaPredicted RBP6.13□□□□□ -1.43
HMGB1P28-201ENST00000507778 MICAL1Q8TDZ2 1067 aa6.13□□□□□ -1.43
HMGB1P28-201ENST00000507778 MRFAP1L1Q96HT8 127 aa6.13□□□□□ -1.43
HMGB1P28-201ENST00000507778 PSMG3-AS1Q96PY0 264 aa6.13□□□□□ -1.43
HMGB1P28-201ENST00000507778 SSBP4Q9BWG4 385 aaPredicted RBP6.13□□□□□ -1.43
HMGB1P28-201ENST00000507778 CCDC113Q9H0I3 377 aa6.13□□□□□ -1.43
HMGB1P28-201ENST00000507778 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.13□□□□□ -1.43
HMGB1P28-201ENST00000507778 PIF1Q9H611 641 aa6.13□□□□□ -1.43
HMGB1P28-201ENST00000507778 CEP131Q9UPN4 1083 aa6.13□□□□□ -1.43
HMGB1P28-201ENST00000507778 LTBP3Q9NS15 1303 aa6.13□□□□□ -1.43
HMGB1P28-201ENST00000507778 CCDC85CA6NKD9 419 aa6.12□□□□□ -1.43
HMGB1P28-201ENST00000507778 DYNC1LI2O43237 492 aaPredicted RBP6.12□□□□□ -1.43
HMGB1P28-201ENST00000507778 UBOX5O94941 541 aa6.12□□□□□ -1.43
HMGB1P28-201ENST00000507778 IGHA1P01876 353 aa6.12□□□□□ -1.43
HMGB1P28-201ENST00000507778 GATA4P43694 442 aa6.12□□□□□ -1.43
HMGB1P28-201ENST00000507778 LETMD1Q6P1Q0 360 aa6.12□□□□□ -1.43
HMGB1P28-201ENST00000507778 VHLLQ6RSH7 139 aa6.12□□□□□ -1.43
HMGB1P28-201ENST00000507778 CLEC10AQ8IUN9 316 aa6.12□□□□□ -1.43
HMGB1P28-201ENST00000507778 TMEM192Q8IY95 271 aa6.12□□□□□ -1.43
HMGB1P28-201ENST00000507778 GIMAP7Q8NHV1 300 aa6.12□□□□□ -1.43
HMGB1P28-201ENST00000507778 TP53INP1Q96A56 240 aa6.12□□□□□ -1.43
HMGB1P28-201ENST00000507778 MIPEPQ99797 713 aa6.12□□□□□ -1.43
HMGB1P28-201ENST00000507778 FAM83CQ9BQN1 747 aa6.12□□□□□ -1.43
HMGB1P28-201ENST00000507778 PRDM10Q9NQV6 1147 aa6.12□□□□□ -1.43
HMGB1P28-201ENST00000507778 C1GALT1Q9NS00 363 aa6.12□□□□□ -1.43
HMGB1P28-201ENST00000507778 ZNF214Q9UL59 606 aaPredicted RBP6.12□□□□□ -1.43
HMGB1P28-201ENST00000507778 MSRB2Q9Y3D2 182 aa6.12□□□□□ -1.43
HMGB1P28-201ENST00000507778 SLITRK5O94991 958 aa6.11□□□□□ -1.43
HMGB1P28-201ENST00000507778 GJB6O95452 261 aa6.11□□□□□ -1.43
HMGB1P28-201ENST00000507778 SLC7A5Q01650 507 aa6.11□□□□□ -1.43
HMGB1P28-201ENST00000507778 CDK5R2Q13319 367 aa6.11□□□□□ -1.43
HMGB1P28-201ENST00000507778 NCAPHQ15003 741 aa6.11□□□□□ -1.43
HMGB1P28-201ENST00000507778 BBS9Q3SYG4 887 aa6.11□□□□□ -1.43
HMGB1P28-201ENST00000507778 GNPTABQ3T906 1256 aa6.11□□□□□ -1.43
HMGB1P28-201ENST00000507778 GPAT2Q6NUI2 795 aa6.11□□□□□ -1.43
HMGB1P28-201ENST00000507778 C6orf15Q6UXA7 325 aaPredicted RBP6.11□□□□□ -1.43
HMGB1P28-201ENST00000507778 RIN3Q8TB24 985 aa6.11□□□□□ -1.43
HMGB1P28-201ENST00000507778 PPP1R13LQ8WUF5 828 aa6.11□□□□□ -1.43
HMGB1P28-201ENST00000507778 SLC6A18Q96N87 628 aa6.11□□□□□ -1.43
HMGB1P28-201ENST00000507778 DEPDC7Q96QD5 511 aa6.11□□□□□ -1.43
HMGB1P28-201ENST00000507778 SNTG2Q9NY99 539 aa6.11□□□□□ -1.43
HMGB1P28-201ENST00000507778 STOML1Q9UBI4 398 aa6.11□□□□□ -1.43
HMGB1P28-201ENST00000507778 SUCOQ9UBS9 1254 aaKnown RBP6.11□□□□□ -1.43
HMGB1P28-201ENST00000507778 PCDHB10Q9UN67 800 aa6.11□□□□□ -1.43
HMGB1P28-201ENST00000507778 MAPK8IP1Q9UQF2 711 aa6.11□□□□□ -1.43
HMGB1P28-201ENST00000507778 PDPK1O15530 556 aa6.1□□□□□ -1.43
HMGB1P28-201ENST00000507778 CLEC3AO75596 197 aa6.1□□□□□ -1.43
HMGB1P28-201ENST00000507778 PMS1P54277 932 aaKnown RBP6.1□□□□□ -1.43
HMGB1P28-201ENST00000507778 KIAA1211LQ6NV74 962 aa6.1□□□□□ -1.43
HMGB1P28-201ENST00000507778 GIMAP6Q6P9H5 292 aa6.1□□□□□ -1.43
HMGB1P28-201ENST00000507778 CDH24Q86UP0 819 aa6.1□□□□□ -1.43
HMGB1P28-201ENST00000507778 TOP6BLQ8N6T0 577 aa6.1□□□□□ -1.43
HMGB1P28-201ENST00000507778 DNAJB8Q8NHS0 232 aa6.1□□□□□ -1.43
HMGB1P28-201ENST00000507778 RAXQ9Y2V3 346 aa6.1□□□□□ -1.43
HMGB1P28-201ENST00000507778 FAM221BA6H8Z2 402 aa6.09□□□□□ -1.43
HMGB1P28-201ENST00000507778 B2RBV5 119 aa6.09□□□□□ -1.43
HMGB1P28-201ENST00000507778 RASA3Q14644 834 aa6.09□□□□□ -1.43
HMGB1P28-201ENST00000507778 ZNF746Q6NUN9 644 aaPredicted RBP6.09□□□□□ -1.43
HMGB1P28-201ENST00000507778 DUSP23Q9BVJ7 150 aa6.09□□□□□ -1.43
HMGB1P28-201ENST00000507778 C7orf69Q9H7B7 122 aa6.09□□□□□ -1.43
HMGB1P28-201ENST00000507778 TLDC2A0PJX2 215 aa6.08□□□□□ -1.44
HMGB1P28-201ENST00000507778 HMX2A2RU54 273 aa6.08□□□□□ -1.44
HMGB1P28-201ENST00000507778 SMARCA5O60264 1052 aaPredicted RBP6.08□□□□□ -1.44
HMGB1P28-201ENST00000507778 TP53P04637 393 aaPredicted RBP6.08□□□□□ -1.44
HMGB1P28-201ENST00000507778 FAM87AP0C7U9 286 aa6.08□□□□□ -1.44
HMGB1P28-201ENST00000507778 CYP7A1P22680 504 aa6.08□□□□□ -1.44
HMGB1P28-201ENST00000507778 ETV3P41162 512 aa6.08□□□□□ -1.44
HMGB1P28-201ENST00000507778 IFRD2Q12894 506 aaPredicted RBP6.08□□□□□ -1.44
HMGB1P28-201ENST00000507778 RASGRF1Q13972 1273 aa6.08□□□□□ -1.44
HMGB1P28-201ENST00000507778 EEPD1Q7L9B9 569 aa6.08□□□□□ -1.44
HMGB1P28-201ENST00000507778 KLHL6Q8WZ60 621 aa6.08□□□□□ -1.44
HMGB1P28-201ENST00000507778 SMARCC1Q92922 1105 aaPredicted RBP6.08□□□□□ -1.44
HMGB1P28-201ENST00000507778 KREMEN1Q96MU8 473 aa6.08□□□□□ -1.44
HMGB1P28-201ENST00000507778 TBC1D32Q96NH3 1257 aa6.08□□□□□ -1.44
HMGB1P28-201ENST00000507778 TPX2Q9ULW0 747 aaKnown RBP6.08□□□□□ -1.44
HMGB1P28-201ENST00000507778 TMA7Q9Y2S6 64 aaKnown RBP6.08□□□□□ -1.44
HMGB1P28-201ENST00000507778 LEFTY1O75610 366 aa6.07□□□□□ -1.44
HMGB1P28-201ENST00000507778 EOMESO95936 686 aa6.07□□□□□ -1.44
HMGB1P28-201ENST00000507778 RNF4P78317 190 aa6.07□□□□□ -1.44
HMGB1P28-201ENST00000507778 NBPF12Q5TAG4 269 aaPredicted RBP6.07□□□□□ -1.44
HMGB1P28-201ENST00000507778 TDRD10Q5VZ19 366 aaKnown RBP6.07□□□□□ -1.44
HMGB1P28-201ENST00000507778 MRM1Q6IN84 353 aaKnown RBP6.07□□□□□ -1.44
HMGB1P28-201ENST00000507778 OGFOD3Q6PK18 319 aa6.07□□□□□ -1.44
HMGB1P28-201ENST00000507778 PRR23CQ6ZRP0 262 aa6.07□□□□□ -1.44
HMGB1P28-201ENST00000507778 ZAR1Q86SH2 424 aa6.07□□□□□ -1.44
HMGB1P28-201ENST00000507778 PPFIBP1Q86W92 1011 aa6.07□□□□□ -1.44
HMGB1P28-201ENST00000507778 CCDC144CPQ8IYA2 1237 aa6.07□□□□□ -1.44
HMGB1P28-201ENST00000507778 ST13P5Q8NFI4 369 aaPredicted RBP6.07□□□□□ -1.44
HMGB1P28-201ENST00000507778 VWCEQ96DN2 955 aa6.07□□□□□ -1.44
HMGB1P28-201ENST00000507778 ZNF512BQ96KM6 892 aaPredicted RBP6.07□□□□□ -1.44
HMGB1P28-201ENST00000507778 MKRN2Q9H000 416 aaKnown RBP6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 220.7 ms