RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.33□□□□□ -1.56
LSM6-205ENST00000507449 CST3P01034 146 aaPredicted RBP5.33□□□□□ -1.56
LSM6-205ENST00000507449 NFICP08651 508 aa5.33□□□□□ -1.56
LSM6-205ENST00000507449 PRAMEF13Q5VWM6 474 aa5.33□□□□□ -1.56
LSM6-205ENST00000507449 SEZ6L2Q6UXD5 910 aa5.33□□□□□ -1.56
LSM6-205ENST00000507449 UNC5AQ6ZN44 842 aa5.33□□□□□ -1.56
LSM6-205ENST00000507449 MYRFLQ96LU7 910 aa5.33□□□□□ -1.56
LSM6-205ENST00000507449 PIDD1Q9HB75 910 aa5.33□□□□□ -1.56
LSM6-205ENST00000507449 ACTR10Q9NZ32 417 aa5.33□□□□□ -1.56
LSM6-205ENST00000507449 FAM86C2PA6NEL3 165 aa5.32□□□□□ -1.56
LSM6-205ENST00000507449 SART1O43290 800 aaKnown RBP5.32□□□□□ -1.56
LSM6-205ENST00000507449 GAS2O43903 313 aaKnown RBP5.32□□□□□ -1.56
LSM6-205ENST00000507449 UBOX5O94941 541 aa5.32□□□□□ -1.56
LSM6-205ENST00000507449 BMP3P12645 472 aa5.32□□□□□ -1.56
LSM6-205ENST00000507449 MLECQ14165 292 aa5.32□□□□□ -1.56
LSM6-205ENST00000507449 UVSSAQ2YD98 709 aa5.32□□□□□ -1.56
LSM6-205ENST00000507449 SOGA3Q5TF21 947 aa5.32□□□□□ -1.56
LSM6-205ENST00000507449 INTS3Q68E01 1043 aaKnown RBP5.32□□□□□ -1.56
LSM6-205ENST00000507449 ARMCX6Q7L4S7 300 aa5.32□□□□□ -1.56
LSM6-205ENST00000507449 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.32□□□□□ -1.56
LSM6-205ENST00000507449 PPP1R13LQ8WUF5 828 aa5.32□□□□□ -1.56
LSM6-205ENST00000507449 LGR6Q9HBX8 967 aa5.32□□□□□ -1.56
LSM6-205ENST00000507449 PCOLCE2Q9UKZ9 415 aa5.32□□□□□ -1.56
LSM6-205ENST00000507449 MSRB2Q9Y3D2 182 aa5.32□□□□□ -1.56
LSM6-205ENST00000507449 DAGLAQ9Y4D2 1042 aa5.32□□□□□ -1.56
LSM6-205ENST00000507449 B2RBV5 119 aa5.31□□□□□ -1.56
LSM6-205ENST00000507449 RGS13O14921 159 aa5.31□□□□□ -1.56
LSM6-205ENST00000507449 MAP4P27816 1152 aaKnown RBP5.31□□□□□ -1.56
LSM6-205ENST00000507449 USP11P51784 963 aa5.31□□□□□ -1.56
LSM6-205ENST00000507449 YARSP54577 528 aaKnown RBP5.31□□□□□ -1.56
LSM6-205ENST00000507449 RASA3Q14644 834 aa5.31□□□□□ -1.56
LSM6-205ENST00000507449 BMS1Q14692 1282 aaKnown RBP5.31□□□□□ -1.56
LSM6-205ENST00000507449 PPP2R5EQ16537 467 aa5.31□□□□□ -1.56
LSM6-205ENST00000507449 DDR2Q16832 855 aa5.31□□□□□ -1.56
LSM6-205ENST00000507449 GIMAP6Q6P9H5 292 aa5.31□□□□□ -1.56
LSM6-205ENST00000507449 CDC37L1Q7L3B6 337 aa5.31□□□□□ -1.56
LSM6-205ENST00000507449 FAM20CQ8IXL6 584 aa5.31□□□□□ -1.56
LSM6-205ENST00000507449 TMEM192Q8IY95 271 aa5.31□□□□□ -1.56
LSM6-205ENST00000507449 KCT2Q8NC54 265 aa5.31□□□□□ -1.56
LSM6-205ENST00000507449 BAHD1Q8TBE0 780 aaPredicted RBP5.31□□□□□ -1.56
LSM6-205ENST00000507449 UTP4Q969X6 686 aaKnown RBP5.31□□□□□ -1.56
LSM6-205ENST00000507449 KIF2CQ99661 725 aa5.31□□□□□ -1.56
LSM6-205ENST00000507449 TRIM55Q9BYV6 548 aa5.31□□□□□ -1.56
LSM6-205ENST00000507449 FOXQ1Q9C009 403 aa5.31□□□□□ -1.56
LSM6-205ENST00000507449 ZSWIM4Q9H7M6 989 aa5.31□□□□□ -1.56
LSM6-205ENST00000507449 ST7Q9NRC1 585 aa5.31□□□□□ -1.56
LSM6-205ENST00000507449 C1GALT1Q9NS00 363 aa5.31□□□□□ -1.56
LSM6-205ENST00000507449 FAM221BA6H8Z2 402 aa5.3□□□□□ -1.56
LSM6-205ENST00000507449 LRIG2O94898 1065 aa5.3□□□□□ -1.56
LSM6-205ENST00000507449 SLITRK5O94991 958 aa5.3□□□□□ -1.56
LSM6-205ENST00000507449 RAG1P15918 1043 aa5.3□□□□□ -1.56
LSM6-205ENST00000507449 LARP1BQ659C4 914 aaKnown RBP5.3□□□□□ -1.56
LSM6-205ENST00000507449 MRM1Q6IN84 353 aaKnown RBP5.3□□□□□ -1.56
LSM6-205ENST00000507449 C6orf15Q6UXA7 325 aaPredicted RBP5.3□□□□□ -1.56
LSM6-205ENST00000507449 PPFIBP1Q86W92 1011 aa5.3□□□□□ -1.56
LSM6-205ENST00000507449 DNAJB8Q8NHS0 232 aa5.3□□□□□ -1.56
LSM6-205ENST00000507449 RIN3Q8TB24 985 aa5.3□□□□□ -1.56
LSM6-205ENST00000507449 XAGE3Q8WTP9 111 aa5.3□□□□□ -1.56
LSM6-205ENST00000507449 CYB5D2Q8WUJ1 264 aa5.3□□□□□ -1.56
LSM6-205ENST00000507449 KLHL6Q8WZ60 621 aa5.3□□□□□ -1.56
LSM6-205ENST00000507449 SSU72Q9NP77 194 aaKnown RBP5.3□□□□□ -1.56
LSM6-205ENST00000507449 PCMTD2Q9NV79 361 aa5.3□□□□□ -1.56
LSM6-205ENST00000507449 SNTG2Q9NY99 539 aa5.3□□□□□ -1.56
LSM6-205ENST00000507449 SIRPGQ9P1W8 387 aa5.3□□□□□ -1.56
LSM6-205ENST00000507449 PCDHB10Q9UN67 800 aa5.3□□□□□ -1.56
LSM6-205ENST00000507449 CDK11AQ9UQ88 783 aaPredicted RBP5.3□□□□□ -1.56
LSM6-205ENST00000507449 GJB6O95452 261 aa5.29□□□□□ -1.56
LSM6-205ENST00000507449 CDK5R2Q13319 367 aa5.29□□□□□ -1.56
LSM6-205ENST00000507449 PHACTR4Q8IZ21 702 aa5.29□□□□□ -1.56
LSM6-205ENST00000507449 GATA6Q92908 595 aa5.29□□□□□ -1.56
LSM6-205ENST00000507449 MKL1Q969V6 931 aa5.29□□□□□ -1.56
LSM6-205ENST00000507449 CCDC74BQ96LY2 380 aa5.29□□□□□ -1.56
LSM6-205ENST00000507449 SLC6A18Q96N87 628 aa5.29□□□□□ -1.56
LSM6-205ENST00000507449 ZNF214Q9UL59 606 aaPredicted RBP5.29□□□□□ -1.56
LSM6-205ENST00000507449 MAPK8IP1Q9UQF2 711 aa5.29□□□□□ -1.56
LSM6-205ENST00000507449 CNTNAP4Q9C0A0 1308 aa5.28□□□□□ -1.56
LSM6-205ENST00000507449 FAM95CA0A1B0GW59 222 aa5.28□□□□□ -1.56
LSM6-205ENST00000507449 C9IYK1 514 aa5.28□□□□□ -1.56
LSM6-205ENST00000507449 LEFTY1O75610 366 aa5.28□□□□□ -1.56
LSM6-205ENST00000507449 FXNQ16595 210 aa5.28□□□□□ -1.56
LSM6-205ENST00000507449 ZNF746Q6NUN9 644 aaPredicted RBP5.28□□□□□ -1.56
LSM6-205ENST00000507449 BEND4Q6ZU67 534 aa5.28□□□□□ -1.56
LSM6-205ENST00000507449 FAM178BQ8IXR5 827 aa5.28□□□□□ -1.56
LSM6-205ENST00000507449 SHISA5Q8N114 240 aa5.28□□□□□ -1.56
LSM6-205ENST00000507449 MFSD2AQ8NA29 543 aa5.28□□□□□ -1.56
LSM6-205ENST00000507449 VWCEQ96DN2 955 aa5.28□□□□□ -1.56
LSM6-205ENST00000507449 DEPDC7Q96QD5 511 aa5.28□□□□□ -1.56
LSM6-205ENST00000507449 RNF112Q9ULX5 631 aa5.28□□□□□ -1.56
LSM6-205ENST00000507449 R3HCC1Q9Y3T6 440 aaKnown RBP5.28□□□□□ -1.56
LSM6-205ENST00000507449 CCDC85CA6NKD9 419 aa5.27□□□□□ -1.57
LSM6-205ENST00000507449 DHX15O43143 795 aaKnown RBP5.27□□□□□ -1.57
LSM6-205ENST00000507449 EOMESO95936 686 aa5.27□□□□□ -1.57
LSM6-205ENST00000507449 RXRBP28702 533 aa5.27□□□□□ -1.57
LSM6-205ENST00000507449 CCNFP41002 786 aa5.27□□□□□ -1.57
LSM6-205ENST00000507449 PMS1P54277 932 aaKnown RBP5.27□□□□□ -1.57
LSM6-205ENST00000507449 MAP7Q14244 749 aa5.27□□□□□ -1.57
LSM6-205ENST00000507449 LETMD1Q6P1Q0 360 aa5.27□□□□□ -1.57
LSM6-205ENST00000507449 NOP9Q86U38 636 aaKnown RBP5.27□□□□□ -1.57
LSM6-205ENST00000507449 JAZF1Q86VZ6 243 aa5.27□□□□□ -1.57
LSM6-205ENST00000507449 SRPK1Q96SB4 655 aaKnown RBP5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms