RNA–Protein interactions for RNA: ENST00000506018.5

NR1I3-222, Transcript of nuclear receptor subfamily 1 group I member 3, humanhuman

TSL 1 (best)

Gene NR1I3, Length 1,380 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1I3-222ENST00000506018 CWC22Q9HCG8 908 aaKnown RBP12.55□□□□□ -0.4
NR1I3-222ENST00000506018 DCP1AQ9NPI6 582 aaPredicted RBP12.55□□□□□ -0.4
NR1I3-222ENST00000506018 MORF4L1Q9UBU8 362 aa12.55□□□□□ -0.4
NR1I3-222ENST00000506018 GABRQQ9UN88 632 aa12.55□□□□□ -0.4
NR1I3-222ENST00000506018 USP17L15C9J2P7 530 aa12.54□□□□□ -0.4
NR1I3-222ENST00000506018 USP17L13C9JLJ4 530 aa12.54□□□□□ -0.4
NR1I3-222ENST00000506018 USP17L11C9JVI0 530 aa12.54□□□□□ -0.4
NR1I3-222ENST00000506018 USP17L18D6R9N7 530 aa12.54□□□□□ -0.4
NR1I3-222ENST00000506018 USP17L22D6RA61 530 aa12.54□□□□□ -0.4
NR1I3-222ENST00000506018 USP17L17D6RBQ6 530 aa12.54□□□□□ -0.4
NR1I3-222ENST00000506018 USP17L19D6RCP7 530 aa12.54□□□□□ -0.4
NR1I3-222ENST00000506018 USP17L20D6RJB6 530 aa12.54□□□□□ -0.4
NR1I3-222ENST00000506018 SMARCA5O60264 1052 aaPredicted RBP12.54□□□□□ -0.4
NR1I3-222ENST00000506018 MBD4O95243 580 aa12.54□□□□□ -0.4
NR1I3-222ENST00000506018 NEFLP07196 543 aa12.54□□□□□ -0.4
NR1I3-222ENST00000506018 GJB1P08034 283 aa12.54□□□□□ -0.4
NR1I3-222ENST00000506018 CCL5P13501 91 aa12.54□□□□□ -0.4
NR1I3-222ENST00000506018 HERVK_113P62684 666 aa12.54□□□□□ -0.4
NR1I3-222ENST00000506018 USP17L24Q0WX57 530 aa12.54□□□□□ -0.4
NR1I3-222ENST00000506018 C12orf42Q96LP6 360 aa12.54□□□□□ -0.4
NR1I3-222ENST00000506018 KIAA1683Q9H0B3 1180 aa12.54□□□□□ -0.4
NR1I3-222ENST00000506018 ERC2O15083 957 aa12.53□□□□□ -0.4
NR1I3-222ENST00000506018 MAPK4P31152 587 aa12.53□□□□□ -0.4
NR1I3-222ENST00000506018 SHMT1P34896 483 aa12.53□□□□□ -0.4
NR1I3-222ENST00000506018 CCNA1P78396 465 aa12.53□□□□□ -0.4
NR1I3-222ENST00000506018 JAG1P78504 1218 aa12.53□□□□□ -0.4
NR1I3-222ENST00000506018 MTFR1Q15390 333 aa12.53□□□□□ -0.4
NR1I3-222ENST00000506018 ZYXQ15942 572 aaKnown RBP12.53□□□□□ -0.4
NR1I3-222ENST00000506018 SOCS4Q8WXH5 440 aa12.53□□□□□ -0.4
NR1I3-222ENST00000506018 P2RX7Q99572 595 aaKnown RBP12.53□□□□□ -0.4
NR1I3-222ENST00000506018 SH2D4AQ9H788 454 aa12.53□□□□□ -0.4
NR1I3-222ENST00000506018 EMILIN3Q9NT22 766 aa12.53□□□□□ -0.4
NR1I3-222ENST00000506018 GLRX3O76003 335 aaKnown RBP12.52□□□□□ -0.41
NR1I3-222ENST00000506018 INHAP05111 366 aa12.52□□□□□ -0.41
NR1I3-222ENST00000506018 ZFYP08048 801 aaPredicted RBP12.52□□□□□ -0.41
NR1I3-222ENST00000506018 GJA8P48165 433 aa12.52□□□□□ -0.41
NR1I3-222ENST00000506018 RRP1P56182 461 aaKnown RBP12.52□□□□□ -0.41
NR1I3-222ENST00000506018 GABPAQ06546 454 aa12.52□□□□□ -0.41
NR1I3-222ENST00000506018 SHROOM1Q2M3G4 852 aaPredicted RBP12.52□□□□□ -0.41
NR1I3-222ENST00000506018 TMEM179Q6ZVK1 233 aa12.52□□□□□ -0.41
NR1I3-222ENST00000506018 CCDC17Q96LX7 622 aa12.52□□□□□ -0.41
NR1I3-222ENST00000506018 NUDT12Q9BQG2 462 aa12.52□□□□□ -0.41
NR1I3-222ENST00000506018 PAGR1Q9BTK6 254 aa12.52□□□□□ -0.41
NR1I3-222ENST00000506018 ARHGEF10LQ9HCE6 1279 aa12.52□□□□□ -0.41
NR1I3-222ENST00000506018 SUPT16HQ9Y5B9 1047 aaKnown RBP12.52□□□□□ -0.41
NR1I3-222ENST00000506018 SLC4A4Q9Y6R1 1079 aa12.52□□□□□ -0.41
NR1I3-222ENST00000506018 BRCA2P51587 3418 aa12.51□□□□□ -0.41
NR1I3-222ENST00000506018 TTC41PQ6P2S7 1318 aa12.51□□□□□ -0.41
NR1I3-222ENST00000506018 HMGCRP04035 888 aa12.51□□□□□ -0.41
NR1I3-222ENST00000506018 ELNP15502 786 aa12.51□□□□□ -0.41
NR1I3-222ENST00000506018 VCAM1P19320 739 aa12.51□□□□□ -0.41
NR1I3-222ENST00000506018 ERVK-9P63128 1117 aa12.51□□□□□ -0.41
NR1I3-222ENST00000506018 ERVK-24P63145 666 aa12.51□□□□□ -0.41
NR1I3-222ENST00000506018 TRMT44Q8IYL2 757 aaKnown RBP12.51□□□□□ -0.41
NR1I3-222ENST00000506018 KBTBD3Q8NAB2 608 aa12.51□□□□□ -0.41
NR1I3-222ENST00000506018 HTATIP2Q9BUP3 242 aa12.51□□□□□ -0.41
NR1I3-222ENST00000506018 ARPP21Q9UBL0 812 aaPredicted RBP12.51□□□□□ -0.41
NR1I3-222ENST00000506018 RABGAP1Q9Y3P9 1069 aa12.51□□□□□ -0.41
NR1I3-222ENST00000506018 SEPT2Q15019 361 aa12.5□□□□□ -0.41
NR1I3-222ENST00000506018 C12orf60Q5U649 245 aa12.5□□□□□ -0.41
NR1I3-222ENST00000506018 CATSPERGQ6ZRH7 1159 aa12.5□□□□□ -0.41
NR1I3-222ENST00000506018 U2AF1L4Q8WU68 220 aaKnown RBP12.5□□□□□ -0.41
NR1I3-222ENST00000506018 UNC93B1Q9H1C4 597 aa12.5□□□□□ -0.41
NR1I3-222ENST00000506018 PLXNB2O15031 1838 aa12.5□□□□□ -0.41
NR1I3-222ENST00000506018 USP17L12C9JPN9 530 aa12.49□□□□□ -0.41
NR1I3-222ENST00000506018 USP17L21D6R901 530 aa12.49□□□□□ -0.41
NR1I3-222ENST00000506018 RNF113AO15541 343 aaKnown RBP12.49□□□□□ -0.41
NR1I3-222ENST00000506018 PRKAB2O43741 272 aa12.49□□□□□ -0.41
NR1I3-222ENST00000506018 SGPL1O95470 568 aa12.49□□□□□ -0.41
NR1I3-222ENST00000506018 TFRCP02786 760 aaKnown RBP12.49□□□□□ -0.41
NR1I3-222ENST00000506018 GNAT2P19087 354 aa12.49□□□□□ -0.41
NR1I3-222ENST00000506018 RGS2P41220 211 aa12.49□□□□□ -0.41
NR1I3-222ENST00000506018 ICA1Q05084 483 aa12.49□□□□□ -0.41
NR1I3-222ENST00000506018 GIMAP6Q6P9H5 292 aa12.49□□□□□ -0.41
NR1I3-222ENST00000506018 ACER1Q8TDN7 264 aa12.49□□□□□ -0.41
NR1I3-222ENST00000506018 APPBP2Q92624 585 aa12.49□□□□□ -0.41
NR1I3-222ENST00000506018 LPAR1Q92633 364 aa12.49□□□□□ -0.41
NR1I3-222ENST00000506018 PUS7LQ9H0K6 701 aaKnown RBP12.49□□□□□ -0.41
NR1I3-222ENST00000506018 RPAP3Q9H6T3 665 aaPredicted RBP12.49□□□□□ -0.41
NR1I3-222ENST00000506018 ZNF287Q9HBT7 754 aa12.49□□□□□ -0.41
NR1I3-222ENST00000506018 HMX1Q9NP08 348 aaPredicted RBP12.49□□□□□ -0.41
NR1I3-222ENST00000506018 HOXC10Q9NYD6 342 aa12.49□□□□□ -0.41
NR1I3-222ENST00000506018 RBPJLQ9UBG7 517 aa12.49□□□□□ -0.41
NR1I3-222ENST00000506018 IVNS1ABPQ9Y6Y0 642 aa12.49□□□□□ -0.41
NR1I3-222ENST00000506018 CYP2D6P10635 497 aa12.48□□□□□ -0.41
NR1I3-222ENST00000506018 XRCC5P13010 732 aaKnown RBP12.48□□□□□ -0.41
NR1I3-222ENST00000506018 CDK8P49336 464 aa12.48□□□□□ -0.41
NR1I3-222ENST00000506018 AAMPQ13685 434 aa12.48□□□□□ -0.41
NR1I3-222ENST00000506018 WDR78Q5VTH9 848 aa12.48□□□□□ -0.41
NR1I3-222ENST00000506018 LBX2Q6XYB7 198 aa12.48□□□□□ -0.41
NR1I3-222ENST00000506018 C16orf86Q6ZW13 317 aa12.48□□□□□ -0.41
NR1I3-222ENST00000506018 PLEKHH3Q7Z736 793 aa12.48□□□□□ -0.41
NR1I3-222ENST00000506018 DPF3Q92784 378 aa12.48□□□□□ -0.41
NR1I3-222ENST00000506018 SHISA4Q96DD7 197 aa12.48□□□□□ -0.41
NR1I3-222ENST00000506018 DYNLL2Q96FJ2 89 aa12.48□□□□□ -0.41
NR1I3-222ENST00000506018 DEFB118Q96PH6 123 aa12.48□□□□□ -0.41
NR1I3-222ENST00000506018 TANGO6Q9C0B7 1094 aa12.48□□□□□ -0.41
NR1I3-222ENST00000506018 TXNRD2Q9NNW7 524 aa12.48□□□□□ -0.41
NR1I3-222ENST00000506018 GJD2Q9UKL4 321 aa12.48□□□□□ -0.41
NR1I3-222ENST00000506018 MKI67P46013 3256 aaKnown RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms