RNA–Protein interactions for RNA: ENST00000503338.5

TOPBP1-202, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 3

Gene TOPBP1, Length 618 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-202ENST00000503338 SMIM22K7EJ46 135 aa9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 CTDNEP1O95476 244 aa9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 TTLL1O95922 423 aa9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 YBX3P16989 372 aaKnown RBP eCLIP9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 XBP1P17861 261 aa9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 SHMT1P34896 483 aa9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 CACNB3P54284 484 aa9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 AKAP17AQ02040 695 aaKnown RBP9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 TROAPQ12815 778 aa9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 GPR162Q16538 588 aa9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 RCSD1Q6JBY9 416 aa9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 TMEM179Q6ZVK1 233 aa9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 APOBEC3FQ8IUX4 373 aaKnown RBP9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 PNMA1Q8ND90 353 aa9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 NKX2-3Q8TAU0 364 aa9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 RNF26Q9BY78 433 aaPredicted RBP9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 ZSCAN16Q9H4T2 348 aaPredicted RBP9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 KANSL2Q9H9L4 492 aa9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 NCOA5Q9HCD5 579 aaKnown RBP9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 IL17RBQ9NRM6 502 aa9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 GINM1Q9NU53 330 aa9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 MTMR4Q9NYA4 1195 aa9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 ORC3Q9UBD5 711 aaPredicted RBP9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 STX8Q9UNK0 236 aa9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 ZNF541Q9H0D2 1346 aa9.46□□□□□ -0.9
TOPBP1-202ENST00000503338 IGKV6D-41A0A0C4DH26 115 aa9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 JAK2O60674 1132 aa9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 DEXIO95424 95 aa9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 FMNL1O95466 1100 aaPredicted RBP9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 SMARCA1P28370 1054 aa9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 CDC27P30260 824 aa9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 ADD1P35611 737 aaKnown RBP9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 EVX2Q03828 476 aa9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 TRIM29Q14134 588 aa9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 NFKBIBQ15653 356 aa9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 NTRK3Q16288 839 aa9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 CSPP1Q1MSJ5 1256 aa9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 NBPF9Q3BBW0 867 aa9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 RBM26Q5T8P6 1007 aaKnown RBP9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 C9orf131Q5VYM1 1079 aa9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 SH3BP5LQ7L8J4 393 aa9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 ZFPM1Q8IX07 1006 aa9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 FAM177A1Q8N128 213 aaPredicted RBP9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 DDX11Q96FC9 970 aa9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 CEP95Q96GE4 821 aa9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 C8orf76Q96K31 380 aa9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 SENP2Q9HC62 589 aa9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 FAM217BQ9NTX9 383 aaPredicted RBP9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 NYAP2Q9P242 653 aa9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 MTMR6Q9Y217 621 aa9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 PITPNM2Q9BZ72 1349 aa9.45□□□□□ -0.9
TOPBP1-202ENST00000503338 VPS37CA5D8V6 355 aaPredicted RBP9.44□□□□□ -0.9
TOPBP1-202ENST00000503338 MPHOSPH10O00566 681 aaKnown RBP9.44□□□□□ -0.9
TOPBP1-202ENST00000503338 SOCS7O14512 581 aa9.44□□□□□ -0.9
TOPBP1-202ENST00000503338 NMT2O60551 498 aa9.44□□□□□ -0.9
TOPBP1-202ENST00000503338 F13A1P00488 732 aa9.44□□□□□ -0.9
TOPBP1-202ENST00000503338 AKR1B1P15121 316 aa9.44□□□□□ -0.9
TOPBP1-202ENST00000503338 MCM4P33991 863 aa9.44□□□□□ -0.9
TOPBP1-202ENST00000503338 MAP3K10Q02779 954 aa9.44□□□□□ -0.9
TOPBP1-202ENST00000503338 GRM4Q14833 912 aa9.44□□□□□ -0.9
TOPBP1-202ENST00000503338 ABCB5Q2M3G0 1257 aa9.44□□□□□ -0.9
TOPBP1-202ENST00000503338 DCAF15Q66K64 600 aa9.44□□□□□ -0.9
TOPBP1-202ENST00000503338 ATL3Q6DD88 541 aa9.44□□□□□ -0.9
TOPBP1-202ENST00000503338 TMTC3Q6ZXV5 915 aa9.44□□□□□ -0.9
TOPBP1-202ENST00000503338 TMEM47Q9BQJ4 181 aa9.44□□□□□ -0.9
TOPBP1-202ENST00000503338 MYL10Q9BUA6 226 aa9.44□□□□□ -0.9
TOPBP1-202ENST00000503338 ADARB2Q9NS39 739 aaKnown RBP9.44□□□□□ -0.9
TOPBP1-202ENST00000503338 ZDHHC9Q9Y397 364 aa9.44□□□□□ -0.9
TOPBP1-202ENST00000503338 CNTNAP1P78357 1384 aa9.44□□□□□ -0.9
TOPBP1-202ENST00000503338 ADAMTSL1Q8N6G6 1762 aa9.44□□□□□ -0.9
TOPBP1-202ENST00000503338 SBF1O95248 1867 aa9.43□□□□□ -0.9
TOPBP1-202ENST00000503338 PRPF3O43395 683 aaKnown RBP9.43□□□□□ -0.9
TOPBP1-202ENST00000503338 PARP1P09874 1014 aaKnown RBP9.43□□□□□ -0.9
TOPBP1-202ENST00000503338 FDPSP14324 419 aaKnown RBP9.43□□□□□ -0.9
TOPBP1-202ENST00000503338 RXRAP19793 462 aa9.43□□□□□ -0.9
TOPBP1-202ENST00000503338 PKP1Q13835 747 aa9.43□□□□□ -0.9
TOPBP1-202ENST00000503338 RASA3Q14644 834 aa9.43□□□□□ -0.9
TOPBP1-202ENST00000503338 TBC1D10BQ4KMP7 808 aaPredicted RBP9.43□□□□□ -0.9
TOPBP1-202ENST00000503338 ASPRV1Q53RT3 343 aa9.43□□□□□ -0.9
TOPBP1-202ENST00000503338 GPATCH4Q5T3I0 446 aaKnown RBP9.43□□□□□ -0.9
TOPBP1-202ENST00000503338 SAMD7Q7Z3H4 446 aa9.43□□□□□ -0.9
TOPBP1-202ENST00000503338 CCDC144CPQ8IYA2 1237 aa9.43□□□□□ -0.9
TOPBP1-202ENST00000503338 FBXO18Q8NFZ0 1043 aa9.43□□□□□ -0.9
TOPBP1-202ENST00000503338 MKL1Q969V6 931 aa9.43□□□□□ -0.9
TOPBP1-202ENST00000503338 L3MBTL3Q96JM7 780 aaPredicted RBP9.43□□□□□ -0.9
TOPBP1-202ENST00000503338 ALG1Q9BT22 464 aa9.43□□□□□ -0.9
TOPBP1-202ENST00000503338 SLC26A6Q9BXS9 759 aa9.43□□□□□ -0.9
TOPBP1-202ENST00000503338 DNAJC18Q9H819 358 aa9.43□□□□□ -0.9
TOPBP1-202ENST00000503338 HACL1Q9UJ83 578 aa9.43□□□□□ -0.9
TOPBP1-202ENST00000503338 IQCA1LA6NCM1 817 aa9.42□□□□□ -0.9
TOPBP1-202ENST00000503338 DDNO94850 711 aaPredicted RBP9.42□□□□□ -0.9
TOPBP1-202ENST00000503338 BAG4O95429 457 aaKnown RBP9.42□□□□□ -0.9
TOPBP1-202ENST00000503338 ASNSP08243 561 aa9.42□□□□□ -0.9
TOPBP1-202ENST00000503338 ICA1Q05084 483 aa9.42□□□□□ -0.9
TOPBP1-202ENST00000503338 SAFBQ15424 915 aaKnown RBP eCLIP9.42□□□□□ -0.9
TOPBP1-202ENST00000503338 SKOR2Q2VWA4 1001 aaPredicted RBP9.42□□□□□ -0.9
TOPBP1-202ENST00000503338 BRAPQ7Z569 592 aa9.42□□□□□ -0.9
TOPBP1-202ENST00000503338 NBPF11Q86T75 865 aa9.42□□□□□ -0.9
TOPBP1-202ENST00000503338 RAB11FIP4Q86YS3 637 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms