RNA–Protein interactions for RNA: ENST00000498725.5

CCDC171-209, Transcript of coiled-coil domain containing 171, humanhuman

TSL 3

Gene CCDC171, Length 498 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-209ENST00000498725 GLRX3O76003 335 aaKnown RBP11.22□□□□□ -0.61
CCDC171-209ENST00000498725 MAP4K4O95819 1239 aaPredicted RBP11.22□□□□□ -0.61
CCDC171-209ENST00000498725 FLT1P17948 1338 aa11.22□□□□□ -0.61
CCDC171-209ENST00000498725 LAMA2P24043 3122 aaKnown RBP11.22□□□□□ -0.61
CCDC171-209ENST00000498725 EYSQ5T1H1 3165 aa11.22□□□□□ -0.61
CCDC171-209ENST00000498725 USP17L2Q6R6M4 530 aa11.22□□□□□ -0.61
CCDC171-209ENST00000498725 NPLOC4Q8TAT6 608 aa11.22□□□□□ -0.61
CCDC171-209ENST00000498725 BADQ92934 168 aa11.22□□□□□ -0.61
CCDC171-209ENST00000498725 ZNF521Q96K83 1311 aa11.22□□□□□ -0.61
CCDC171-209ENST00000498725 DHX36Q9H2U1 1008 aaKnown RBP11.22□□□□□ -0.61
CCDC171-209ENST00000498725 IVNS1ABPQ9Y6Y0 642 aa11.22□□□□□ -0.61
CCDC171-209ENST00000498725 E9PSI1 815 aa11.21□□□□□ -0.61
CCDC171-209ENST00000498725 BAG3O95817 575 aa11.21□□□□□ -0.61
CCDC171-209ENST00000498725 GH2P01242 217 aa11.21□□□□□ -0.61
CCDC171-209ENST00000498725 FOSL2P15408 326 aa11.21□□□□□ -0.61
CCDC171-209ENST00000498725 PTPREP23469 700 aa11.21□□□□□ -0.61
CCDC171-209ENST00000498725 ARID4AP29374 1257 aaPredicted RBP11.21□□□□□ -0.61
CCDC171-209ENST00000498725 DYNLL1P63167 89 aaKnown RBP11.21□□□□□ -0.61
CCDC171-209ENST00000498725 CCNA1P78396 465 aa11.21□□□□□ -0.61
CCDC171-209ENST00000498725 RAB3GAP1Q15042 981 aa11.21□□□□□ -0.61
CCDC171-209ENST00000498725 ALDH1L2Q3SY69 923 aa11.21□□□□□ -0.61
CCDC171-209ENST00000498725 ADGRA1Q86SQ6 560 aa11.21□□□□□ -0.61
CCDC171-209ENST00000498725 TRPV1Q8NER1 839 aa11.21□□□□□ -0.61
CCDC171-209ENST00000498725 LPAR1Q92633 364 aa11.21□□□□□ -0.61
CCDC171-209ENST00000498725 FERMT2Q96AC1 680 aa11.21□□□□□ -0.61
CCDC171-209ENST00000498725 CDCA7LQ96GN5 454 aa11.21□□□□□ -0.61
CCDC171-209ENST00000498725 PRDM6Q9NQX0 595 aa11.21□□□□□ -0.61
CCDC171-209ENST00000498725 HDAC5Q9UQL6 1122 aa11.21□□□□□ -0.61
CCDC171-209ENST00000498725 RABGAP1Q9Y3P9 1069 aa11.21□□□□□ -0.61
CCDC171-209ENST00000498725 ZNFX1Q9P2E3 1918 aaKnown RBP11.21□□□□□ -0.62
CCDC171-209ENST00000498725 SLC15A5A6NIM6 579 aa11.2□□□□□ -0.62
CCDC171-209ENST00000498725 USP17L15C9J2P7 530 aa11.2□□□□□ -0.62
CCDC171-209ENST00000498725 USP17L13C9JLJ4 530 aa11.2□□□□□ -0.62
CCDC171-209ENST00000498725 KBTBD13C9JR72 458 aa11.2□□□□□ -0.62
CCDC171-209ENST00000498725 USP17L11C9JVI0 530 aa11.2□□□□□ -0.62
CCDC171-209ENST00000498725 USP17L18D6R9N7 530 aa11.2□□□□□ -0.62
CCDC171-209ENST00000498725 USP17L22D6RA61 530 aa11.2□□□□□ -0.62
CCDC171-209ENST00000498725 USP17L17D6RBQ6 530 aa11.2□□□□□ -0.62
CCDC171-209ENST00000498725 USP17L19D6RCP7 530 aa11.2□□□□□ -0.62
CCDC171-209ENST00000498725 USP17L20D6RJB6 530 aa11.2□□□□□ -0.62
CCDC171-209ENST00000498725 DNM1LO00429 736 aa11.2□□□□□ -0.62
CCDC171-209ENST00000498725 HLA-DOAP06340 250 aa11.2□□□□□ -0.62
CCDC171-209ENST00000498725 USP17L24Q0WX57 530 aa11.2□□□□□ -0.62
CCDC171-209ENST00000498725 TRIM60Q495X7 471 aa11.2□□□□□ -0.62
CCDC171-209ENST00000498725 TTC39AQ5SRH9 613 aa11.2□□□□□ -0.62
CCDC171-209ENST00000498725 SLC39A5Q6ZMH5 540 aa11.2□□□□□ -0.62
CCDC171-209ENST00000498725 FOXP4Q8IVH2 680 aaPredicted RBP11.2□□□□□ -0.62
CCDC171-209ENST00000498725 GTF3C2Q8WUA4 911 aaPredicted RBP11.2□□□□□ -0.62
CCDC171-209ENST00000498725 TTYH1Q9H313 450 aaPredicted RBP11.2□□□□□ -0.62
CCDC171-209ENST00000498725 BTBD7Q9P203 1132 aa11.2□□□□□ -0.62
CCDC171-209ENST00000498725 UQCRFS1P1P0C7P4 283 aa11.19□□□□□ -0.62
CCDC171-209ENST00000498725 PLCG2P16885 1265 aa11.19□□□□□ -0.62
CCDC171-209ENST00000498725 ADCYAP1R1P41586 468 aa11.19□□□□□ -0.62
CCDC171-209ENST00000498725 SLFN5Q08AF3 891 aa11.19□□□□□ -0.62
CCDC171-209ENST00000498725 G3BP1Q13283 466 aaKnown RBP eCLIP11.19□□□□□ -0.62
CCDC171-209ENST00000498725 PRAMEF19Q5SWL8 479 aa11.19□□□□□ -0.62
CCDC171-209ENST00000498725 SH3RF1Q7Z6J0 888 aa11.19□□□□□ -0.62
CCDC171-209ENST00000498725 DPP9Q86TI2 863 aa11.19□□□□□ -0.62
CCDC171-209ENST00000498725 MYH8P13535 1937 aa11.19□□□□□ -0.62
CCDC171-209ENST00000498725 MSCO60682 206 aa11.18□□□□□ -0.62
CCDC171-209ENST00000498725 EVX2Q03828 476 aa11.18□□□□□ -0.62
CCDC171-209ENST00000498725 MKRN4PQ13434 485 aaPredicted RBP11.18□□□□□ -0.62
CCDC171-209ENST00000498725 CATSPERGQ6ZRH7 1159 aa11.18□□□□□ -0.62
CCDC171-209ENST00000498725 MIGA1Q8NAN2 632 aa11.18□□□□□ -0.62
CCDC171-209ENST00000498725 ARRDC4Q8NCT1 418 aa11.18□□□□□ -0.62
CCDC171-209ENST00000498725 ACER1Q8TDN7 264 aa11.18□□□□□ -0.62
CCDC171-209ENST00000498725 API5Q9BZZ5 524 aaKnown RBP11.18□□□□□ -0.62
CCDC171-209ENST00000498725 RPAP3Q9H6T3 665 aaPredicted RBP11.18□□□□□ -0.62
CCDC171-209ENST00000498725 NAV1Q8NEY1 1877 aa11.18□□□□□ -0.62
CCDC171-209ENST00000498725 COL11A1P12107 1806 aaPredicted RBP11.18□□□□□ -0.62
CCDC171-209ENST00000498725 SMCHD1A6NHR9 2005 aa11.18□□□□□ -0.62
CCDC171-209ENST00000498725 PLXNA1Q9UIW2 1896 aa11.17□□□□□ -0.62
CCDC171-209ENST00000498725 PNMA6EA0A0J9YXQ4 647 aa11.17□□□□□ -0.62
CCDC171-209ENST00000498725 TRIM43BA6NCK2 446 aa11.17□□□□□ -0.62
CCDC171-209ENST00000498725 CYP2E1P05181 493 aaPredicted RBP11.17□□□□□ -0.62
CCDC171-209ENST00000498725 GNAI3P08754 354 aa11.17□□□□□ -0.62
CCDC171-209ENST00000498725 CYBAP13498 195 aa11.17□□□□□ -0.62
CCDC171-209ENST00000498725 VCAM1P19320 739 aa11.17□□□□□ -0.62
CCDC171-209ENST00000498725 CYP7A1P22680 504 aa11.17□□□□□ -0.62
CCDC171-209ENST00000498725 ADORA2AP29274 412 aa11.17□□□□□ -0.62
CCDC171-209ENST00000498725 ZAP70P43403 619 aa11.17□□□□□ -0.62
CCDC171-209ENST00000498725 USP5P45974 858 aa11.17□□□□□ -0.62
CCDC171-209ENST00000498725 GRB14Q14449 540 aa11.17□□□□□ -0.62
CCDC171-209ENST00000498725 PLS1Q14651 629 aa11.17□□□□□ -0.62
CCDC171-209ENST00000498725 ATF7IPQ6VMQ6 1270 aa11.17□□□□□ -0.62
CCDC171-209ENST00000498725 METTL16Q86W50 562 aaKnown RBP11.17□□□□□ -0.62
CCDC171-209ENST00000498725 PPM1EQ8WY54 764 aa11.17□□□□□ -0.62
CCDC171-209ENST00000498725 TRIM43Q96BQ3 446 aaPredicted RBP11.17□□□□□ -0.62
CCDC171-209ENST00000498725 RNPC3Q96LT9 517 aaKnown RBP11.17□□□□□ -0.62
CCDC171-209ENST00000498725 DBNDD2Q9BQY9 259 aa11.17□□□□□ -0.62
CCDC171-209ENST00000498725 PIH1D3Q9NQM4 214 aaKnown RBP11.17□□□□□ -0.62
CCDC171-209ENST00000498725 PDLIM7Q9NR12 457 aa11.17□□□□□ -0.62
CCDC171-209ENST00000498725 GINM1Q9NU53 330 aa11.17□□□□□ -0.62
CCDC171-209ENST00000498725 RAPGEFL1Q9UHV5 662 aa11.17□□□□□ -0.62
CCDC171-209ENST00000498725 ZNF236Q9UL36 1845 aa11.16□□□□□ -0.62
CCDC171-209ENST00000498725 SPDYE16A6NNV3 312 aaPredicted RBP11.16□□□□□ -0.62
CCDC171-209ENST00000498725 COL9A1P20849 921 aa11.16□□□□□ -0.62
CCDC171-209ENST00000498725 USP14P54578 494 aa11.16□□□□□ -0.62
CCDC171-209ENST00000498725 PPP4CP60510 307 aa11.16□□□□□ -0.62
CCDC171-209ENST00000498725 SMAD3P84022 425 aaKnown RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms