RNA–Protein interactions for RNA: ENST00000496946.1

SNRNP48-202, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

TSL 2

Gene SNRNP48, Length 2,610 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-202ENST00000496946 SMC4Q9NTJ3 1288 aa3.74□□□□□ -1.81
SNRNP48-202ENST00000496946 TMEM39AQ9NV64 488 aa3.74□□□□□ -1.81
SNRNP48-202ENST00000496946 CWC25Q9NXE8 425 aaPredicted RBP3.74□□□□□ -1.81
SNRNP48-202ENST00000496946 SWAP70Q9UH65 585 aa3.74□□□□□ -1.81
SNRNP48-202ENST00000496946 KLHL33A6NCF5 533 aa3.74□□□□□ -1.81
SNRNP48-202ENST00000496946 SART1O43290 800 aaKnown RBP3.74□□□□□ -1.81
SNRNP48-202ENST00000496946 CBFA2T2O43439 604 aa3.74□□□□□ -1.81
SNRNP48-202ENST00000496946 TIAF1O95411 115 aa3.74□□□□□ -1.81
SNRNP48-202ENST00000496946 GSTP1P09211 210 aaKnown RBP3.74□□□□□ -1.81
SNRNP48-202ENST00000496946 CASQ1P31415 396 aa3.74□□□□□ -1.81
SNRNP48-202ENST00000496946 CCT2P78371 535 aaKnown RBP3.74□□□□□ -1.81
SNRNP48-202ENST00000496946 GJC2Q5T442 439 aaPredicted RBP3.74□□□□□ -1.81
SNRNP48-202ENST00000496946 SDE2Q6IQ49 451 aa3.74□□□□□ -1.81
SNRNP48-202ENST00000496946 CCAR1Q8IX12 1150 aaKnown RBP3.74□□□□□ -1.81
SNRNP48-202ENST00000496946 MNS1Q8NEH6 495 aa3.74□□□□□ -1.81
SNRNP48-202ENST00000496946 CFAP53Q96M91 514 aa3.74□□□□□ -1.81
SNRNP48-202ENST00000496946 NECAB3Q96P71 396 aaPredicted RBP3.74□□□□□ -1.81
SNRNP48-202ENST00000496946 RPS6KC1Q96S38 1066 aa3.74□□□□□ -1.81
SNRNP48-202ENST00000496946 C12orf49Q9H741 205 aa3.74□□□□□ -1.81
SNRNP48-202ENST00000496946 AOC2O75106 756 aa3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 TPM3P06753 285 aa3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 SSTR4P31391 388 aa3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 NTF4P34130 210 aa3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 TERF1P54274 439 aa3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 NFKBIBQ15653 356 aa3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 NKG7Q16617 165 aa3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 CCDC144BQ3MJ40 725 aa3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 PRPF40BQ6NWY9 871 aaKnown RBP3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 TTC30BQ8N4P2 665 aa3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 C1orf131Q8NDD1 294 aaKnown RBP3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 DHX38Q92620 1227 aaKnown RBP3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 NACC1Q96RE7 527 aa3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 RSPH9Q9H1X1 276 aaPredicted RBP3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 DONSONQ9NYP3 566 aa3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 CGNQ9P2M7 1197 aaKnown RBP3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 STOML1Q9UBI4 398 aa3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 RAD54L2Q9Y4B4 1467 aa3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 ABCC9O60706 1549 aa3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 MINDY4BA8MYZ0 360 aa3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 IPO5O00410 1097 aaKnown RBP3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 GAS2O43903 313 aaKnown RBP3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 VDRP11473 427 aa3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 ABCD1P33897 745 aa3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 GTF2F1P35269 517 aaKnown RBP eCLIP3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 ATP2B2Q01814 1243 aa3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 KIAA2012Q0VF49 1180 aa3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 PSMD2Q13200 908 aa3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 TBC1D10BQ4KMP7 808 aaPredicted RBP3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 HSP90B2PQ58FF3 399 aa3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 PDILTQ8N807 584 aa3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 FAM46AQ96IP4 442 aaKnown RBP3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 CORINQ9Y5Q5 1042 aa3.73□□□□□ -1.81
SNRNP48-202ENST00000496946 RB1CC1Q8TDY2 1594 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 SCO2A0A1W2PP80 73 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 BICDL2A1A5D9 508 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 HMMRO75330 724 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 PRPF40AO75400 957 aaKnown RBP3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 RECKO95980 971 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 CYP11A1P05108 521 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 BMP6P22004 513 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 MAP4P27816 1152 aaKnown RBP3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 ASPAP45381 313 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 SOX4Q06945 474 aaPredicted RBP3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 ZMYM1Q5SVZ6 1142 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 LDLRAD1Q5T700 205 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 CTR9Q6PD62 1173 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 Q6ZS46 218 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 PPP1R3FQ6ZSY5 799 aaPredicted RBP3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 FBXO27Q8NI29 283 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 RSPH1Q8WYR4 309 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 JARID2Q92833 1246 aaPredicted RBP3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 IPO9Q96P70 1041 aaKnown RBP3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 C22orf23Q9BZE7 217 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 DISC1Q9NRI5 854 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 ISY1Q9ULR0 285 aaKnown RBP3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 KNSTRNQ9Y448 316 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 GRIN3BO60391 1043 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 LEFTY1O75610 366 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 PDE6BP35913 854 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 EXOSC6Q5RKV6 272 aaKnown RBP3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 MFSD4BQ5TF39 518 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 TTBK2Q6IQ55 1244 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 BNC2Q6ZN30 1099 aaPredicted RBP3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 FAM20CQ8IXL6 584 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 NLGN1Q8N2Q7 840 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 ERCC4Q92889 916 aaPredicted RBP3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 GAL3ST3Q96A11 431 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 PLPPR2Q96GM1 343 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 FANCD2OSQ96PS1 177 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 BACH2Q9BYV9 841 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 CNTNAP4Q9C0A0 1308 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 CXorf56Q9H5V9 222 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 FBRSQ9HAH7 460 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 MAP3K20Q9NYL2 800 aaKnown RBP3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 VTI1BQ9UEU0 232 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 UNC13AQ9UPW8 1703 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 SPG7Q9UQ90 795 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 PCDHGC5Q9Y5F6 944 aa3.72□□□□□ -1.81
SNRNP48-202ENST00000496946 WDR64B1ANS9 1081 aa3.71□□□□□ -1.82
SNRNP48-202ENST00000496946 TMPRSS2O15393 492 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms