RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 ABHD8Q96I13 439 aa6.44□□□□□ -1.38
USF3-204ENST00000496826 SNX1Q13596 522 aa6.44□□□□□ -1.38
USF3-204ENST00000496826 TDRD12Q587J7 1177 aaKnown RBP6.44□□□□□ -1.38
USF3-204ENST00000496826 CRACR2BQ8N4Y2 399 aaPredicted RBP6.44□□□□□ -1.38
USF3-204ENST00000496826 ACRBPQ8NEB7 543 aa6.44□□□□□ -1.38
USF3-204ENST00000496826 GTF3C6Q969F1 213 aa6.44□□□□□ -1.38
USF3-204ENST00000496826 OSBPL10Q9BXB5 764 aa6.44□□□□□ -1.38
USF3-204ENST00000496826 SLC5A4Q9NY91 659 aa6.44□□□□□ -1.38
USF3-204ENST00000496826 RGL1Q9NZL6 768 aa6.44□□□□□ -1.38
USF3-204ENST00000496826 RSL24D1Q9UHA3 163 aaKnown RBP6.44□□□□□ -1.38
USF3-204ENST00000496826 PLEKHH1Q9ULM0 1364 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 VAMP4O75379 141 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 EEF1DP29692 281 aaKnown RBP6.43□□□□□ -1.38
USF3-204ENST00000496826 BLOC1S2Q6QNY1 142 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 TEX2Q8IWB9 1127 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 STAMQ92783 540 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 IRAK4Q9NWZ3 460 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 TOMM70O94826 608 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 ZRANB3Q5FWF4 1079 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 PARP2Q9UGN5 583 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 FANCIQ9NVI1 1328 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 PSMD14O00487 310 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 SPARCP09486 303 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 ATICP31939 592 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 CAV3P56539 151 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 ICA1Q05084 483 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 NBPF8Q3BBV2 869 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 RAB42Q8N4Z0 105 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 RNF34Q969K3 372 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 XPO6Q96QU8 1125 aaKnown RBP6.43□□□□□ -1.38
USF3-204ENST00000496826 PARVAQ9NVD7 372 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 KLHL28Q9NXS3 571 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 PPP6R1Q9UPN7 881 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 PAXBP1Q9Y5B6 917 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 AKR1B15C9JRZ8 316 aaPredicted RBP6.43□□□□□ -1.38
USF3-204ENST00000496826 AP3B1O00203 1094 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 ACADLP28330 430 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 IGHMBP2P38935 993 aaKnown RBP6.43□□□□□ -1.38
USF3-204ENST00000496826 CUL3Q13618 768 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 NUDT18Q6ZVK8 323 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 TDRPQ86YL5 185 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 RTL3Q8N8U3 475 aaKnown RBP6.43□□□□□ -1.38
USF3-204ENST00000496826 TUBB6Q9BUF5 446 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 TRIM10Q9UDY6 481 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 PRPF6O94906 941 aaKnown RBP6.43□□□□□ -1.38
USF3-204ENST00000496826 SEMA3DO95025 777 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 HSPA1AP0DMV8 641 aaKnown RBP6.43□□□□□ -1.38
USF3-204ENST00000496826 HSPA1BP0DMV9 641 aaKnown RBP6.43□□□□□ -1.38
USF3-204ENST00000496826 IKBIPQ70UQ0 350 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 FAM71BQ8TC56 605 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 QKIQ96PU8 341 aaKnown RBP eCLIP6.43□□□□□ -1.38
USF3-204ENST00000496826 EIF3CQ99613 913 aaKnown RBP6.43□□□□□ -1.38
USF3-204ENST00000496826 DBNLQ9UJU6 430 aaKnown RBP6.43□□□□□ -1.38
USF3-204ENST00000496826 FBXO2Q9UK22 296 aaPredicted RBP6.43□□□□□ -1.38
USF3-204ENST00000496826 TPX2Q9ULW0 747 aaKnown RBP6.43□□□□□ -1.38
USF3-204ENST00000496826 CYP46A1Q9Y6A2 500 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 GRK2P25098 689 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 JADE1Q6IE81 842 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 B4GALNT3Q6L9W6 998 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 SRPK1Q96SB4 655 aaKnown RBP6.43□□□□□ -1.38
USF3-204ENST00000496826 SIN3AQ96ST3 1273 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 STON1Q9Y6Q2 735 aa6.43□□□□□ -1.38
USF3-204ENST00000496826 XPAP23025 273 aaPredicted RBP6.42□□□□□ -1.38
USF3-204ENST00000496826 PMS2P54278 862 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 RAB2AP61019 212 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 SLC9C1Q4G0N8 1177 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 ZKSCAN2Q63HK3 967 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 PALB2Q86YC2 1186 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 TTC13Q8NBP0 860 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 H0Y3Z8 333 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 M0QZ92 97 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 CES2O00748 559 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 RASA1P20936 1047 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 TTC39AQ5SRH9 613 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 PNMA8AQ86V59 439 aaPredicted RBP6.42□□□□□ -1.38
USF3-204ENST00000496826 PPWD1Q96BP3 646 aaKnown RBP6.42□□□□□ -1.38
USF3-204ENST00000496826 ZW10O43264 779 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 SRGAP2BP0DMP2 458 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 CCT8P50990 548 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 LIN9Q5TKA1 542 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 TIGD7Q6NT04 549 aaPredicted RBP6.42□□□□□ -1.38
USF3-204ENST00000496826 GOLGA5Q8TBA6 731 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 PPP1R13BQ96KQ4 1090 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 BRIP1Q9BX63 1249 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 ERAP1Q9NZ08 941 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 ATP6V0A2Q9Y487 856 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 PEX1O43933 1283 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 ECDO95905 644 aaPredicted RBP6.42□□□□□ -1.38
USF3-204ENST00000496826 LRPAP1P30533 357 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 UBXN1Q04323 297 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 DNAJC3Q13217 504 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 CDC37Q16543 378 aaPredicted RBP6.42□□□□□ -1.38
USF3-204ENST00000496826 SND1Q7KZF4 910 aaKnown RBP eCLIP6.42□□□□□ -1.38
USF3-204ENST00000496826 KLHDC4Q8TBB5 520 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 SIRT1Q96EB6 747 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 CABP5Q9NP86 173 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 ST7Q9NRC1 585 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 L1RE1Q9UN81 338 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 GUCA1AP43080 201 aaPredicted RBP6.42□□□□□ -1.38
USF3-204ENST00000496826 TEDDM1Q5T9Z0 273 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms