RNA–Protein interactions for RNA: ENST00000496385.5

HPS4-217, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 2,772 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-217ENST00000496385 TRAF1Q13077 416 aa10.24□□□□□ -0.77
HPS4-217ENST00000496385 MTX1Q13505 466 aa10.24□□□□□ -0.77
HPS4-217ENST00000496385 KARSQ15046 597 aaKnown RBP10.24□□□□□ -0.77
HPS4-217ENST00000496385 SF3A1Q15459 793 aaKnown RBP10.24□□□□□ -0.77
HPS4-217ENST00000496385 ZNF827Q17R98 1081 aa10.24□□□□□ -0.77
HPS4-217ENST00000496385 CCDC40Q4G0X9 1142 aa10.24□□□□□ -0.77
HPS4-217ENST00000496385 PPP1R42Q7Z4L9 355 aa10.24□□□□□ -0.77
HPS4-217ENST00000496385 ZNF483Q8TF39 744 aaPredicted RBP10.24□□□□□ -0.77
HPS4-217ENST00000496385 CCDC51Q96ER9 411 aa10.24□□□□□ -0.77
HPS4-217ENST00000496385 CD248Q9HCU0 757 aa10.24□□□□□ -0.77
HPS4-217ENST00000496385 ZNF330Q9Y3S2 320 aaPredicted RBP10.24□□□□□ -0.77
HPS4-217ENST00000496385 AKR1B15C9JRZ8 316 aaPredicted RBP10.23□□□□□ -0.77
HPS4-217ENST00000496385 MYO1FO00160 1098 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 DTNBO60941 627 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 CLSTN1O94985 981 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 NEFHP12036 1026 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 GGCXP38435 758 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 STK3Q13188 491 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 R3HDM1Q15032 1099 aaKnown RBP10.23□□□□□ -0.77
HPS4-217ENST00000496385 SNCBQ16143 134 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 ZNF569Q5MCW4 686 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 EMC10Q5UCC4 262 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 TLDC1Q6P9B6 456 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 UBE3BQ7Z3V4 1068 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 TICAM2Q86XR7 235 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 NSUN7Q8NE18 718 aaKnown RBP10.23□□□□□ -0.77
HPS4-217ENST00000496385 FBXW7Q969H0 707 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.23□□□□□ -0.77
HPS4-217ENST00000496385 KCPQ6ZWJ8 1503 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 MED23Q9ULK4 1368 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 NDUFAB1O14561 156 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 CLNS1AP54105 237 aaKnown RBP10.23□□□□□ -0.77
HPS4-217ENST00000496385 SEMA3FQ13275 785 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 SLMAPQ14BN4 828 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 STK38Q15208 465 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 NBPF14Q5TI25 921 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 PDILTQ8N807 584 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 NEK1Q96PY6 1258 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 PLCD4Q9BRC7 762 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 MYO6Q9UM54 1294 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 LY75O60449 1722 aa10.23□□□□□ -0.77
HPS4-217ENST00000496385 ANKRD18BA2A2Z9 1011 aa10.22□□□□□ -0.77
HPS4-217ENST00000496385 GOLGA6BA6NDN3 693 aa10.22□□□□□ -0.77
HPS4-217ENST00000496385 TMEM232C9JQI7 657 aa10.22□□□□□ -0.77
HPS4-217ENST00000496385 AGPSO00116 658 aa10.22□□□□□ -0.77
HPS4-217ENST00000496385 FECHP22830 423 aa10.22□□□□□ -0.77
HPS4-217ENST00000496385 RBBP5Q15291 538 aaKnown RBP10.22□□□□□ -0.77
HPS4-217ENST00000496385 INTS13Q9NVM9 706 aa10.22□□□□□ -0.77
HPS4-217ENST00000496385 DACH1Q9UI36 760 aa10.22□□□□□ -0.77
HPS4-217ENST00000496385 FAM237AA0A1B0GTK4 181 aa10.22□□□□□ -0.77
HPS4-217ENST00000496385 SPTLC2O15270 562 aa10.22□□□□□ -0.77
HPS4-217ENST00000496385 IPO7O95373 1038 aaKnown RBP10.22□□□□□ -0.77
HPS4-217ENST00000496385 EIF2S2P20042 333 aaKnown RBP10.22□□□□□ -0.77
HPS4-217ENST00000496385 EIF4A1P60842 406 aaKnown RBP10.22□□□□□ -0.77
HPS4-217ENST00000496385 AMPD2Q01433 879 aa10.22□□□□□ -0.77
HPS4-217ENST00000496385 CKAP4Q07065 602 aaKnown RBP10.22□□□□□ -0.77
HPS4-217ENST00000496385 TMED8Q6PL24 325 aaPredicted RBP10.22□□□□□ -0.77
HPS4-217ENST00000496385 C3orf20Q8ND61 904 aa10.22□□□□□ -0.77
HPS4-217ENST00000496385 CCDC26Q8TAB7 109 aa10.22□□□□□ -0.77
HPS4-217ENST00000496385 HOOK2Q96ED9 719 aa10.22□□□□□ -0.77
HPS4-217ENST00000496385 FANCLQ9NW38 375 aa10.22□□□□□ -0.77
HPS4-217ENST00000496385 ALS2CLQ60I27 953 aa10.21□□□□□ -0.77
HPS4-217ENST00000496385 RSRC1Q96IZ7 334 aaKnown RBP10.21□□□□□ -0.77
HPS4-217ENST00000496385 PAPPAQ13219 1627 aa10.21□□□□□ -0.77
HPS4-217ENST00000496385 NUP188Q5SRE5 1749 aa10.21□□□□□ -0.77
HPS4-217ENST00000496385 GOLGB1Q14789 3259 aaKnown RBP10.21□□□□□ -0.77
HPS4-217ENST00000496385 BIN1O00499 593 aa10.21□□□□□ -0.78
HPS4-217ENST00000496385 ANXA1P04083 346 aa10.21□□□□□ -0.78
HPS4-217ENST00000496385 A1BGP04217 495 aa10.21□□□□□ -0.78
HPS4-217ENST00000496385 PRPHP41219 470 aa10.21□□□□□ -0.78
HPS4-217ENST00000496385 NMIQ13287 307 aaPredicted RBP10.21□□□□□ -0.78
HPS4-217ENST00000496385 CCNI2Q6ZMN8 369 aaPredicted RBP10.21□□□□□ -0.78
HPS4-217ENST00000496385 FTOQ9C0B1 505 aaKnown RBP eCLIP10.21□□□□□ -0.78
HPS4-217ENST00000496385 LZTFL1Q9NQ48 299 aa10.21□□□□□ -0.78
HPS4-217ENST00000496385 TFCP2L1Q9NZI6 479 aa10.21□□□□□ -0.78
HPS4-217ENST00000496385 HOOK1Q9UJC3 728 aaKnown RBP10.21□□□□□ -0.78
HPS4-217ENST00000496385 FAM184BQ9ULE4 1060 aa10.21□□□□□ -0.78
HPS4-217ENST00000496385 SALL1Q9NSC2 1324 aa10.21□□□□□ -0.78
HPS4-217ENST00000496385 HEG1Q9ULI3 1381 aa10.21□□□□□ -0.78
HPS4-217ENST00000496385 MPHOSPH10O00566 681 aaKnown RBP10.2□□□□□ -0.78
HPS4-217ENST00000496385 GNPATO15228 680 aa10.2□□□□□ -0.78
HPS4-217ENST00000496385 ZNF18P17022 549 aa10.2□□□□□ -0.78
HPS4-217ENST00000496385 SLC27A3Q5K4L6 730 aa10.2□□□□□ -0.78
HPS4-217ENST00000496385 Q6ZUG5 572 aa10.2□□□□□ -0.78
HPS4-217ENST00000496385 PARP9Q8IXQ6 854 aa10.2□□□□□ -0.78
HPS4-217ENST00000496385 SLC35F6Q8N357 371 aa10.2□□□□□ -0.78
HPS4-217ENST00000496385 NOA1Q8NC60 698 aaKnown RBP10.2□□□□□ -0.78
HPS4-217ENST00000496385 ENOX1Q8TC92 643 aaKnown RBP10.2□□□□□ -0.78
HPS4-217ENST00000496385 CALR3Q96L12 384 aaKnown RBP10.2□□□□□ -0.78
HPS4-217ENST00000496385 PSMD1Q99460 953 aa10.2□□□□□ -0.78
HPS4-217ENST00000496385 NUCKS1Q9H1E3 243 aaKnown RBP10.2□□□□□ -0.78
HPS4-217ENST00000496385 DDX20Q9UHI6 824 aaKnown RBP10.2□□□□□ -0.78
HPS4-217ENST00000496385 KDM3BQ7LBC6 1761 aa10.2□□□□□ -0.78
HPS4-217ENST00000496385 PTPDC1A2A3K4 754 aa10.2□□□□□ -0.78
HPS4-217ENST00000496385 CRKLP46109 303 aaKnown RBP10.2□□□□□ -0.78
HPS4-217ENST00000496385 NAP1L1P55209 391 aaKnown RBP10.2□□□□□ -0.78
HPS4-217ENST00000496385 ADKP55263 362 aaKnown RBP10.2□□□□□ -0.78
HPS4-217ENST00000496385 APBA1Q02410 837 aa10.2□□□□□ -0.78
HPS4-217ENST00000496385 GOLGA8FQ08AF8 430 aa10.2□□□□□ -0.78
HPS4-217ENST00000496385 GOLGA8DPQ0D2H9 430 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms