RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 AK9Q5TCS8 1911 aa14.8□□□□□ -0.04
UPF3A-210ENST00000493727 FGFR2P21802 821 aa14.79□□□□□ -0.04
UPF3A-210ENST00000493727 NUCB1Q02818 461 aa14.79□□□□□ -0.04
UPF3A-210ENST00000493727 TFCP2Q12800 502 aa14.79□□□□□ -0.04
UPF3A-210ENST00000493727 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.79□□□□□ -0.04
UPF3A-210ENST00000493727 ATG9AQ7Z3C6 839 aa14.79□□□□□ -0.04
UPF3A-210ENST00000493727 CHD1LQ86WJ1 897 aa14.79□□□□□ -0.04
UPF3A-210ENST00000493727 CLASRPQ8N2M8 674 aaKnown RBP14.79□□□□□ -0.04
UPF3A-210ENST00000493727 BRI3BPQ8WY22 251 aa14.79□□□□□ -0.04
UPF3A-210ENST00000493727 LPIN2Q92539 896 aa14.79□□□□□ -0.04
UPF3A-210ENST00000493727 USB1Q9BQ65 265 aaKnown RBP14.79□□□□□ -0.04
UPF3A-210ENST00000493727 ELP3Q9H9T3 547 aa14.79□□□□□ -0.04
UPF3A-210ENST00000493727 IL1RAPL2Q9NP60 686 aa14.79□□□□□ -0.04
UPF3A-210ENST00000493727 IQSEC3Q9UPP2 1182 aaPredicted RBP14.79□□□□□ -0.04
UPF3A-210ENST00000493727 TCP10L2B9ZVM9 353 aa14.78□□□□□ -0.04
UPF3A-210ENST00000493727 FKBP1CQ5VVH2 108 aa14.78□□□□□ -0.04
UPF3A-210ENST00000493727 WDR66Q8TBY9 1149 aa14.78□□□□□ -0.04
UPF3A-210ENST00000493727 ZDHHC15Q96MV8 337 aa14.78□□□□□ -0.04
UPF3A-210ENST00000493727 CSADQ9Y600 493 aa14.78□□□□□ -0.04
UPF3A-210ENST00000493727 PTCH2Q9Y6C5 1203 aa14.78□□□□□ -0.04
UPF3A-210ENST00000493727 VGLL4Q14135 290 aa14.77□□□□□ -0.05
UPF3A-210ENST00000493727 MSS51Q4VC12 460 aa14.77□□□□□ -0.05
UPF3A-210ENST00000493727 PPP1R18Q6NYC8 613 aa14.77□□□□□ -0.05
UPF3A-210ENST00000493727 HHIPL2Q6UWX4 724 aa14.77□□□□□ -0.05
UPF3A-210ENST00000493727 FAM83AQ86UY5 434 aa14.77□□□□□ -0.05
UPF3A-210ENST00000493727 PROCA1Q8NCQ7 364 aaPredicted RBP14.77□□□□□ -0.05
UPF3A-210ENST00000493727 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.77□□□□□ -0.05
UPF3A-210ENST00000493727 TMEM39BQ9GZU3 492 aa14.77□□□□□ -0.05
UPF3A-210ENST00000493727 AKAP2Q9Y2D5 859 aa14.77□□□□□ -0.05
UPF3A-210ENST00000493727 IFIT2P09913 472 aaKnown RBP14.76□□□□□ -0.05
UPF3A-210ENST00000493727 MTMR2Q13614 643 aa14.76□□□□□ -0.05
UPF3A-210ENST00000493727 TAF1CQ15572 869 aaPredicted RBP14.76□□□□□ -0.05
UPF3A-210ENST00000493727 AACSQ86V21 672 aa14.76□□□□□ -0.05
UPF3A-210ENST00000493727 RETREG3Q86VR2 466 aa14.76□□□□□ -0.05
UPF3A-210ENST00000493727 FAM43AQ8N2R8 423 aa14.76□□□□□ -0.05
UPF3A-210ENST00000493727 SLC6A16Q9GZN6 736 aa14.76□□□□□ -0.05
UPF3A-210ENST00000493727 GNL3LQ9NVN8 582 aaKnown RBP14.76□□□□□ -0.05
UPF3A-210ENST00000493727 RPAP1Q9BWH6 1393 aaPredicted RBP14.75□□□□□ -0.05
UPF3A-210ENST00000493727 CCL15-CCL14A0A0B4J2E2 113 aa14.75□□□□□ -0.05
UPF3A-210ENST00000493727 LILRB3O75022 631 aa14.75□□□□□ -0.05
UPF3A-210ENST00000493727 S1PR4O95977 384 aa14.75□□□□□ -0.05
UPF3A-210ENST00000493727 RGS3P49796 1198 aa14.75□□□□□ -0.05
UPF3A-210ENST00000493727 GTF2A2P52657 109 aa14.75□□□□□ -0.05
UPF3A-210ENST00000493727 GRIK5Q16478 980 aa14.75□□□□□ -0.05
UPF3A-210ENST00000493727 CCL15Q16663 113 aa14.75□□□□□ -0.05
UPF3A-210ENST00000493727 QPCTQ16769 361 aa14.75□□□□□ -0.05
UPF3A-210ENST00000493727 CSPP1Q1MSJ5 1256 aa14.75□□□□□ -0.05
UPF3A-210ENST00000493727 SLC9C1Q4G0N8 1177 aa14.75□□□□□ -0.05
UPF3A-210ENST00000493727 TNNI3KQ59H18 835 aa14.75□□□□□ -0.05
UPF3A-210ENST00000493727 DCAF15Q66K64 600 aa14.75□□□□□ -0.05
UPF3A-210ENST00000493727 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.75□□□□□ -0.05
UPF3A-210ENST00000493727 FPGT-TNNI3KV9GXZ4 949 aa14.75□□□□□ -0.05
UPF3A-210ENST00000493727 WDHD1O75717 1129 aaPredicted RBP14.74□□□□□ -0.05
UPF3A-210ENST00000493727 ARHGEF6Q15052 776 aa14.74□□□□□ -0.05
UPF3A-210ENST00000493727 ATP2B3Q16720 1220 aa14.74□□□□□ -0.05
UPF3A-210ENST00000493727 GPATCH3Q96I76 525 aa14.74□□□□□ -0.05
UPF3A-210ENST00000493727 NEUROD6Q96NK8 337 aa14.74□□□□□ -0.05
UPF3A-210ENST00000493727 ZFYVE28Q9HCC9 887 aa14.74□□□□□ -0.05
UPF3A-210ENST00000493727 GPR108Q9NPR9 543 aa14.74□□□□□ -0.05
UPF3A-210ENST00000493727 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.74□□□□□ -0.05
UPF3A-210ENST00000493727 MYH2Q9UKX2 1941 aa14.74□□□□□ -0.05
UPF3A-210ENST00000493727 SPDYE5A6NIY4 337 aa14.73□□□□□ -0.05
UPF3A-210ENST00000493727 GORABQ5T7V8 394 aa14.73□□□□□ -0.05
UPF3A-210ENST00000493727 APOBEC3HQ6NTF7 200 aaKnown RBP14.73□□□□□ -0.05
UPF3A-210ENST00000493727 ARHGAP39Q9C0H5 1083 aa14.73□□□□□ -0.05
UPF3A-210ENST00000493727 CCDC8Q9H0W5 538 aaPredicted RBP14.73□□□□□ -0.05
UPF3A-210ENST00000493727 PRDM9Q9NQV7 894 aa14.73□□□□□ -0.05
UPF3A-210ENST00000493727 SNCAIPQ9Y6H5 919 aa14.73□□□□□ -0.05
UPF3A-210ENST00000493727 COL6A3P12111 3177 aa14.72□□□□□ -0.05
UPF3A-210ENST00000493727 A0A1B0GUL7 405 aa14.72□□□□□ -0.05
UPF3A-210ENST00000493727 TLR2O60603 784 aa14.72□□□□□ -0.05
UPF3A-210ENST00000493727 NBPF11Q86T75 865 aa14.72□□□□□ -0.05
UPF3A-210ENST00000493727 SKAP1Q86WV1 359 aa14.72□□□□□ -0.05
UPF3A-210ENST00000493727 ERO1BQ86YB8 467 aa14.72□□□□□ -0.05
UPF3A-210ENST00000493727 ZGPATQ8N5A5 531 aaKnown RBP14.72□□□□□ -0.05
UPF3A-210ENST00000493727 ZCCHC17Q9NP64 241 aaKnown RBP14.72□□□□□ -0.05
UPF3A-210ENST00000493727 DENND2AQ9ULE3 1009 aa14.72□□□□□ -0.05
UPF3A-210ENST00000493727 SALL1Q9NSC2 1324 aa14.71□□□□□ -0.05
UPF3A-210ENST00000493727 LDHBP07195 334 aaKnown RBP14.71□□□□□ -0.05
UPF3A-210ENST00000493727 MX1P20591 662 aa14.71□□□□□ -0.05
UPF3A-210ENST00000493727 CACNB3P54284 484 aa14.71□□□□□ -0.05
UPF3A-210ENST00000493727 LACTBP83111 547 aaPredicted RBP14.71□□□□□ -0.05
UPF3A-210ENST00000493727 OTUD7AQ8TE49 926 aaPredicted RBP14.71□□□□□ -0.05
UPF3A-210ENST00000493727 EAF2Q96CJ1 260 aaPredicted RBP14.71□□□□□ -0.05
UPF3A-210ENST00000493727 WRNIP1Q96S55 665 aa14.71□□□□□ -0.05
UPF3A-210ENST00000493727 ZNF341Q9BYN7 854 aa14.71□□□□□ -0.05
UPF3A-210ENST00000493727 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.71□□□□□ -0.05
UPF3A-210ENST00000493727 BTBD19C9JJ37 291 aa14.7□□□□□ -0.06
UPF3A-210ENST00000493727 RNF223E7ERA6 249 aa14.7□□□□□ -0.06
UPF3A-210ENST00000493727 CETPP11597 493 aa14.7□□□□□ -0.06
UPF3A-210ENST00000493727 MMP16P51512 607 aa14.7□□□□□ -0.06
UPF3A-210ENST00000493727 TIMM10P62072 90 aa14.7□□□□□ -0.06
UPF3A-210ENST00000493727 SLC4A8Q2Y0W8 1093 aa14.7□□□□□ -0.06
UPF3A-210ENST00000493727 SH3TC2Q8TF17 1288 aa14.7□□□□□ -0.06
UPF3A-210ENST00000493727 FAM151AQ8WW52 585 aa14.7□□□□□ -0.06
UPF3A-210ENST00000493727 SHISA4Q96DD7 197 aa14.7□□□□□ -0.06
UPF3A-210ENST00000493727 XAGE2Q96GT9 111 aa14.7□□□□□ -0.06
UPF3A-210ENST00000493727 DBNDD2Q9BQY9 259 aa14.7□□□□□ -0.06
UPF3A-210ENST00000493727 TLR7Q9NYK1 1049 aaKnown RBP14.7□□□□□ -0.06
UPF3A-210ENST00000493727 H0YGN5 161 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms