RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 AKT1S1Q96B36 256 aa24.28■■□□□ 1.48
CCDC88B-208ENST00000492980 FBXO2Q9UK22 296 aaPredicted RBP24.28■■□□□ 1.48
CCDC88B-208ENST00000492980 TPM3P06753 285 aa24.28■■□□□ 1.48
CCDC88B-208ENST00000492980 MFSD14BQ5SR56 506 aa24.28■■□□□ 1.48
CCDC88B-208ENST00000492980 ARHGAP30Q7Z6I6 1101 aaPredicted RBP24.28■■□□□ 1.48
CCDC88B-208ENST00000492980 DGKHQ86XP1 1220 aa24.28■■□□□ 1.48
CCDC88B-208ENST00000492980 ANKS1AQ92625 1134 aa24.28■■□□□ 1.48
CCDC88B-208ENST00000492980 NAT10Q9H0A0 1025 aaKnown RBP24.28■■□□□ 1.48
CCDC88B-208ENST00000492980 CABP5Q9NP86 173 aa24.28■■□□□ 1.48
CCDC88B-208ENST00000492980 PTPREP23469 700 aa24.27■■□□□ 1.48
CCDC88B-208ENST00000492980 DPCR1Q3MIW9 517 aa24.27■■□□□ 1.48
CCDC88B-208ENST00000492980 PDZRN4Q6ZMN7 1036 aaPredicted RBP24.27■■□□□ 1.48
CCDC88B-208ENST00000492980 COL23A1Q86Y22 540 aaPredicted RBP24.27■■□□□ 1.48
CCDC88B-208ENST00000492980 FBXW7Q969H0 707 aa24.27■■□□□ 1.48
CCDC88B-208ENST00000492980 BECN2A8MW95 431 aa24.26■■□□□ 1.47
CCDC88B-208ENST00000492980 PLCD1P51178 756 aa24.26■■□□□ 1.47
CCDC88B-208ENST00000492980 RBM6P78332 1123 aaKnown RBP24.26■■□□□ 1.47
CCDC88B-208ENST00000492980 NLGN1Q8N2Q7 840 aa24.26■■□□□ 1.47
CCDC88B-208ENST00000492980 TBC1D22AQ8WUA7 517 aa24.26■■□□□ 1.47
CCDC88B-208ENST00000492980 KAT14Q9H8E8 782 aa24.26■■□□□ 1.47
CCDC88B-208ENST00000492980 MKNK2Q9HBH9 465 aa24.26■■□□□ 1.47
CCDC88B-208ENST00000492980 SAP30BPQ9UHR5 308 aaKnown RBP24.26■■□□□ 1.47
CCDC88B-208ENST00000492980 FAM205AQ6ZU69 1335 aa24.26■■□□□ 1.47
CCDC88B-208ENST00000492980 FAM205CA6NFA0 338 aa24.26■■□□□ 1.47
CCDC88B-208ENST00000492980 PLSCR1O15162 318 aa24.26■■□□□ 1.47
CCDC88B-208ENST00000492980 NLRP12P59046 1061 aa24.26■■□□□ 1.47
CCDC88B-208ENST00000492980 FAM163AQ96GL9 167 aaPredicted RBP24.26■■□□□ 1.47
CCDC88B-208ENST00000492980 KCNF1Q9H3M0 494 aa24.26■■□□□ 1.47
CCDC88B-208ENST00000492980 KCNH3Q9ULD8 1083 aa24.26■■□□□ 1.47
CCDC88B-208ENST00000492980 ATP6V0A2Q9Y487 856 aa24.26■■□□□ 1.47
CCDC88B-208ENST00000492980 ZRSR1Q15695 479 aaKnown RBP24.25■■□□□ 1.47
CCDC88B-208ENST00000492980 NPY5RQ15761 445 aa24.25■■□□□ 1.47
CCDC88B-208ENST00000492980 AOPEPQ8N6M6 819 aa24.25■■□□□ 1.47
CCDC88B-208ENST00000492980 SLC44A5Q8NCS7 719 aa24.25■■□□□ 1.47
CCDC88B-208ENST00000492980 NAP1L5Q96NT1 182 aaPredicted RBP24.25■■□□□ 1.47
CCDC88B-208ENST00000492980 BPIFA3Q9BQP9 254 aa24.25■■□□□ 1.47
CCDC88B-208ENST00000492980 CEP131Q9UPN4 1083 aa24.25■■□□□ 1.47
CCDC88B-208ENST00000492980 GAKO14976 1311 aa24.25■■□□□ 1.47
CCDC88B-208ENST00000492980 KIF5BP33176 963 aa24.25■■□□□ 1.47
CCDC88B-208ENST00000492980 GRIN1Q05586 938 aa24.25■■□□□ 1.47
CCDC88B-208ENST00000492980 EARS2Q5JPH6 523 aaKnown RBP24.25■■□□□ 1.47
CCDC88B-208ENST00000492980 TEX11Q8IYF3 940 aa24.25■■□□□ 1.47
CCDC88B-208ENST00000492980 TCP11L1Q9NUJ3 509 aa24.25■■□□□ 1.47
CCDC88B-208ENST00000492980 PLCG2P16885 1265 aa24.24■■□□□ 1.47
CCDC88B-208ENST00000492980 RHBDL3P58872 404 aa24.24■■□□□ 1.47
CCDC88B-208ENST00000492980 PIBF1Q8WXW3 757 aa24.24■■□□□ 1.47
CCDC88B-208ENST00000492980 TNFRSF25Q93038 417 aa24.24■■□□□ 1.47
CCDC88B-208ENST00000492980 TUBE1Q9UJT0 475 aa24.24■■□□□ 1.47
CCDC88B-208ENST00000492980 FOCADQ5VW36 1801 aa24.24■■□□□ 1.47
CCDC88B-208ENST00000492980 COL11A2P13942 1736 aaPredicted RBP24.24■■□□□ 1.47
CCDC88B-208ENST00000492980 USP17L3A6NCW0 530 aa24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 USP17L4A6NCW7 530 aa24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 BIN1O00499 593 aa24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 SRGNP10124 158 aa24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 ATP2B1P20020 1258 aa24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 CDC25BP30305 580 aa24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 CCDC178Q5BJE1 867 aa24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 USP17L1Q7RTZ2 530 aa24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 SLF2Q8IX21 1173 aa24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 PNMA1Q8ND90 353 aa24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 BRMS1Q9HCU9 246 aa24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 MORC2Q9Y6X9 1032 aaPredicted RBP24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 TSPY3P0CV98 308 aa24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 TSPY8P0CW00 308 aa24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 SCG2P13521 617 aa24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 RASA1P20936 1047 aa24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 PFKFB3Q16875 520 aaPredicted RBP24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 LONRF3Q496Y0 759 aa24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 SPECC1Q5M775 1068 aa24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 KRBA2Q6ZNG9 492 aa24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 ZNF579Q8NAF0 562 aaKnown RBP24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 SRPRBQ9Y5M8 271 aaKnown RBP24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 FLT1P17948 1338 aa24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 MYH1P12882 1939 aa24.23■■□□□ 1.47
CCDC88B-208ENST00000492980 SNED1Q8TER0 1413 aa24.22■■□□□ 1.47
CCDC88B-208ENST00000492980 ZNF444Q8N0Y2 327 aaPredicted RBP24.22■■□□□ 1.47
CCDC88B-208ENST00000492980 TRIM75PA6NK02 468 aa24.22■■□□□ 1.47
CCDC88B-208ENST00000492980 APBA3O96018 575 aa24.22■■□□□ 1.47
CCDC88B-208ENST00000492980 NPR1P16066 1061 aa24.22■■□□□ 1.47
CCDC88B-208ENST00000492980 PTGS1P23219 599 aa24.22■■□□□ 1.47
CCDC88B-208ENST00000492980 METTL16Q86W50 562 aaKnown RBP24.22■■□□□ 1.47
CCDC88B-208ENST00000492980 DRC7Q8IY82 874 aa24.22■■□□□ 1.47
CCDC88B-208ENST00000492980 COA1Q9GZY4 146 aa24.22■■□□□ 1.47
CCDC88B-208ENST00000492980 FAM13BQ9NYF5 915 aa24.22■■□□□ 1.47
CCDC88B-208ENST00000492980 RIMBP2O15034 1052 aa24.21■■□□□ 1.47
CCDC88B-208ENST00000492980 GTF2IP78347 998 aa24.21■■□□□ 1.47
CCDC88B-208ENST00000492980 PNOCQ13519 176 aa24.21■■□□□ 1.47
CCDC88B-208ENST00000492980 GRM4Q14833 912 aa24.21■■□□□ 1.47
CCDC88B-208ENST00000492980 C16orf86Q6ZW13 317 aa24.21■■□□□ 1.47
CCDC88B-208ENST00000492980 MRFAP1L1Q96HT8 127 aa24.21■■□□□ 1.47
CCDC88B-208ENST00000492980 BAZ2BQ9UIF8 2168 aaKnown RBP24.21■■□□□ 1.47
CCDC88B-208ENST00000492980 QSER1Q2KHR3 1735 aa24.21■■□□□ 1.47
CCDC88B-208ENST00000492980 ELOA2Q8IYF1 753 aaPredicted RBP24.2■■□□□ 1.47
CCDC88B-208ENST00000492980 CNNM3Q8NE01 707 aa24.2■■□□□ 1.47
CCDC88B-208ENST00000492980 NOM1Q5C9Z4 860 aaKnown RBP24.2■■□□□ 1.46
CCDC88B-208ENST00000492980 AEBP2Q6ZN18 517 aaPredicted RBP24.2■■□□□ 1.46
CCDC88B-208ENST00000492980 ZNF287Q9HBT7 754 aa24.2■■□□□ 1.46
CCDC88B-208ENST00000492980 CLIP2Q9UDT6 1046 aa24.2■■□□□ 1.46
CCDC88B-208ENST00000492980 NRBP1Q9UHY1 535 aa24.2■■□□□ 1.46
CCDC88B-208ENST00000492980 VEGFAP15692 232 aaPredicted RBP24.19■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms