RNA–Protein interactions for RNA: ENST00000490851.5

HDAC9-225, Transcript of histone deacetylase 9, humanhuman

TSL 2

Gene HDAC9, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-225ENST00000490851 NBPF9Q3BBW0 867 aa11.68□□□□□ -0.54
HDAC9-225ENST00000490851 CDC42EP5Q6NZY7 148 aa11.68□□□□□ -0.54
HDAC9-225ENST00000490851 GAS2L3Q86XJ1 694 aa11.68□□□□□ -0.54
HDAC9-225ENST00000490851 LARGE2Q8N3Y3 721 aa11.68□□□□□ -0.54
HDAC9-225ENST00000490851 MTA3Q9BTC8 594 aa11.68□□□□□ -0.54
HDAC9-225ENST00000490851 BAZ2BQ9UIF8 2168 aaKnown RBP11.68□□□□□ -0.54
HDAC9-225ENST00000490851 MYH1P12882 1939 aa11.68□□□□□ -0.54
HDAC9-225ENST00000490851 YDJCA8MPS7 323 aa11.68□□□□□ -0.54
HDAC9-225ENST00000490851 KIF28PB7ZC32 967 aa11.68□□□□□ -0.54
HDAC9-225ENST00000490851 WDHD1O75717 1129 aaPredicted RBP11.68□□□□□ -0.54
HDAC9-225ENST00000490851 RAD17O75943 681 aa11.68□□□□□ -0.54
HDAC9-225ENST00000490851 CDK8P49336 464 aa11.68□□□□□ -0.54
HDAC9-225ENST00000490851 TCP10Q12799 353 aa11.68□□□□□ -0.54
HDAC9-225ENST00000490851 NFIAQ12857 509 aa11.68□□□□□ -0.54
HDAC9-225ENST00000490851 GNL2Q13823 731 aaKnown RBP11.68□□□□□ -0.54
HDAC9-225ENST00000490851 ILDR1Q86SU0 546 aaPredicted RBP11.68□□□□□ -0.54
HDAC9-225ENST00000490851 CCDC125Q86Z20 511 aa11.68□□□□□ -0.54
HDAC9-225ENST00000490851 TRIM22Q8IYM9 498 aa11.68□□□□□ -0.54
HDAC9-225ENST00000490851 SUPT20HQ8NEM7 779 aa11.68□□□□□ -0.54
HDAC9-225ENST00000490851 LEO1Q8WVC0 666 aaPredicted RBP11.68□□□□□ -0.54
HDAC9-225ENST00000490851 IL17RBQ9NRM6 502 aa11.68□□□□□ -0.54
HDAC9-225ENST00000490851 STX8Q9UNK0 236 aa11.68□□□□□ -0.54
HDAC9-225ENST00000490851 CCDC196A0A1B0GTZ2 297 aa11.67□□□□□ -0.54
HDAC9-225ENST00000490851 SYCE3A1L190 88 aa11.67□□□□□ -0.54
HDAC9-225ENST00000490851 GOLGA6L4A6NEF3 574 aa11.67□□□□□ -0.54
HDAC9-225ENST00000490851 FMNL1O95466 1100 aaPredicted RBP11.67□□□□□ -0.54
HDAC9-225ENST00000490851 SLURP2P0DP57 97 aa11.67□□□□□ -0.54
HDAC9-225ENST00000490851 IFNAR1P17181 557 aa11.67□□□□□ -0.54
HDAC9-225ENST00000490851 RASA1P20936 1047 aa11.67□□□□□ -0.54
HDAC9-225ENST00000490851 TRIM29Q14134 588 aa11.67□□□□□ -0.54
HDAC9-225ENST00000490851 KRT40Q6A162 431 aa11.67□□□□□ -0.54
HDAC9-225ENST00000490851 APOBEC3HQ6NTF7 200 aaKnown RBP11.67□□□□□ -0.54
HDAC9-225ENST00000490851 KAT14Q9H8E8 782 aa11.67□□□□□ -0.54
HDAC9-225ENST00000490851 ROBO3Q96MS0 1386 aa11.67□□□□□ -0.54
HDAC9-225ENST00000490851 SNED1Q8TER0 1413 aa11.67□□□□□ -0.54
HDAC9-225ENST00000490851 ECM29Q5VYK3 1845 aa11.67□□□□□ -0.54
HDAC9-225ENST00000490851 CRACR2BQ8N4Y2 399 aaPredicted RBP11.67□□□□□ -0.54
HDAC9-225ENST00000490851 SCAND2PQ9GZW5 306 aaPredicted RBP11.67□□□□□ -0.54
HDAC9-225ENST00000490851 KCNJ14Q9UNX9 436 aa11.67□□□□□ -0.54
HDAC9-225ENST00000490851 LETM1O95202 739 aaPredicted RBP11.66□□□□□ -0.54
HDAC9-225ENST00000490851 TROAPQ12815 778 aa11.66□□□□□ -0.54
HDAC9-225ENST00000490851 SEMA3FQ13275 785 aa11.66□□□□□ -0.54
HDAC9-225ENST00000490851 RCSD1Q6JBY9 416 aa11.66□□□□□ -0.54
HDAC9-225ENST00000490851 HHIPL2Q6UWX4 724 aa11.66□□□□□ -0.54
HDAC9-225ENST00000490851 C16orf86Q6ZW13 317 aa11.66□□□□□ -0.54
HDAC9-225ENST00000490851 ZFPM1Q8IX07 1006 aa11.66□□□□□ -0.54
HDAC9-225ENST00000490851 RTKN2Q8IZC4 609 aa11.66□□□□□ -0.54
HDAC9-225ENST00000490851 USP28Q96RU2 1077 aa11.66□□□□□ -0.54
HDAC9-225ENST00000490851 MTFR1LQ9H019 292 aa11.66□□□□□ -0.54
HDAC9-225ENST00000490851 DLEC1Q9Y238 1755 aa11.66□□□□□ -0.54
HDAC9-225ENST00000490851 DDX60LQ5H9U9 1706 aaKnown RBP11.66□□□□□ -0.54
HDAC9-225ENST00000490851 AKAP17AQ02040 695 aaKnown RBP11.66□□□□□ -0.54
HDAC9-225ENST00000490851 KIF23Q02241 960 aaPredicted RBP11.66□□□□□ -0.54
HDAC9-225ENST00000490851 RASGRP2Q7LDG7 609 aa11.66□□□□□ -0.54
HDAC9-225ENST00000490851 MTERF4Q7Z6M4 381 aaKnown RBP11.66□□□□□ -0.54
HDAC9-225ENST00000490851 EXOC8Q8IYI6 725 aa11.66□□□□□ -0.54
HDAC9-225ENST00000490851 CTCFLQ8NI51 663 aaPredicted RBP11.66□□□□□ -0.54
HDAC9-225ENST00000490851 GTPBP4Q9BZE4 634 aaKnown RBP11.66□□□□□ -0.54
HDAC9-225ENST00000490851 PIM2Q9P1W9 311 aa11.66□□□□□ -0.54
HDAC9-225ENST00000490851 NID2Q14112 1375 aa11.65□□□□□ -0.54
HDAC9-225ENST00000490851 IRF6O14896 467 aa11.65□□□□□ -0.54
HDAC9-225ENST00000490851 PNMA1Q8ND90 353 aa11.65□□□□□ -0.54
HDAC9-225ENST00000490851 ZNF287Q9HBT7 754 aa11.65□□□□□ -0.54
HDAC9-225ENST00000490851 CFAP45Q9UL16 551 aa11.65□□□□□ -0.54
HDAC9-225ENST00000490851 V9GY48 417 aaPredicted RBP11.65□□□□□ -0.54
HDAC9-225ENST00000490851 STK36Q9NRP7 1315 aa11.65□□□□□ -0.55
HDAC9-225ENST00000490851 FAM196BA6NMK8 535 aa11.65□□□□□ -0.55
HDAC9-225ENST00000490851 DDAH1O94760 285 aa11.65□□□□□ -0.55
HDAC9-225ENST00000490851 CALM1P0DP23 149 aa11.65□□□□□ -0.55
HDAC9-225ENST00000490851 CALM2P0DP24 149 aa11.65□□□□□ -0.55
HDAC9-225ENST00000490851 CALM3P0DP25 149 aa11.65□□□□□ -0.55
HDAC9-225ENST00000490851 EIF6P56537 245 aaKnown RBP11.65□□□□□ -0.55
HDAC9-225ENST00000490851 CLEC10AQ8IUN9 316 aa11.65□□□□□ -0.55
HDAC9-225ENST00000490851 ZSCAN29Q8IWY8 852 aaPredicted RBP11.65□□□□□ -0.55
HDAC9-225ENST00000490851 BICD2Q8TD16 824 aa11.65□□□□□ -0.55
HDAC9-225ENST00000490851 ZDHHC15Q96MV8 337 aa11.65□□□□□ -0.55
HDAC9-225ENST00000490851 ZNF396Q96N95 335 aaPredicted RBP11.65□□□□□ -0.55
HDAC9-225ENST00000490851 OSBPL5Q9H0X9 879 aaPredicted RBP11.65□□□□□ -0.55
HDAC9-225ENST00000490851 ZBTB12Q9Y330 459 aaPredicted RBP11.65□□□□□ -0.55
HDAC9-225ENST00000490851 COL4A5P29400 1685 aa11.64□□□□□ -0.55
HDAC9-225ENST00000490851 FSD2A1L4K1 749 aa11.64□□□□□ -0.55
HDAC9-225ENST00000490851 PSMD14O00487 310 aa11.64□□□□□ -0.55
HDAC9-225ENST00000490851 DEXIO95424 95 aa11.64□□□□□ -0.55
HDAC9-225ENST00000490851 LIG1P18858 919 aa11.64□□□□□ -0.55
HDAC9-225ENST00000490851 RCAN1P53805 252 aa11.64□□□□□ -0.55
HDAC9-225ENST00000490851 DALRD3Q5D0E6 543 aaKnown RBP11.64□□□□□ -0.55
HDAC9-225ENST00000490851 OTUD6BQ8N6M0 293 aa11.64□□□□□ -0.55
HDAC9-225ENST00000490851 WASF1Q92558 559 aa11.64□□□□□ -0.55
HDAC9-225ENST00000490851 SYAP1Q96A49 352 aaPredicted RBP11.64□□□□□ -0.55
HDAC9-225ENST00000490851 PGBD1Q96JS3 809 aa11.64□□□□□ -0.55
HDAC9-225ENST00000490851 TDRD3Q9H7E2 651 aaKnown RBP11.64□□□□□ -0.55
HDAC9-225ENST00000490851 VPS54Q9P1Q0 977 aa11.64□□□□□ -0.55
HDAC9-225ENST00000490851 FOCADQ5VW36 1801 aa11.64□□□□□ -0.55
HDAC9-225ENST00000490851 CFAP100Q494V2 611 aa11.64□□□□□ -0.55
HDAC9-225ENST00000490851 TMTC3Q6ZXV5 915 aa11.64□□□□□ -0.55
HDAC9-225ENST00000490851 SRBD1Q8N5C6 995 aaKnown RBP11.64□□□□□ -0.55
HDAC9-225ENST00000490851 RBM28Q9NW13 759 aaKnown RBP11.64□□□□□ -0.55
HDAC9-225ENST00000490851 CLIC4Q9Y696 253 aa11.64□□□□□ -0.55
HDAC9-225ENST00000490851 MYH15Q9Y2K3 1946 aa11.63□□□□□ -0.55
HDAC9-225ENST00000490851 ELP1O95163 1332 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms