RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 SPAG5Q96R06 1193 aa14.39□□□□□ -0.11
SHOX2-205ENST00000490689 VIRMAQ69YN4 1812 aaKnown RBP14.38□□□□□ -0.11
SHOX2-205ENST00000490689 VSNL1P62760 191 aa14.38□□□□□ -0.11
SHOX2-205ENST00000490689 PDE4DQ08499 809 aa14.38□□□□□ -0.11
SHOX2-205ENST00000490689 ICE2Q659A1 982 aa14.38□□□□□ -0.11
SHOX2-205ENST00000490689 PYM1Q9BRP8 204 aaKnown RBP14.38□□□□□ -0.11
SHOX2-205ENST00000490689 POLD4Q9HCU8 107 aa14.38□□□□□ -0.11
SHOX2-205ENST00000490689 TBC1D8O95759 1140 aa14.38□□□□□ -0.11
SHOX2-205ENST00000490689 MAGEA1P43355 309 aa14.38□□□□□ -0.11
SHOX2-205ENST00000490689 PPFIA1Q13136 1202 aa14.38□□□□□ -0.11
SHOX2-205ENST00000490689 B4GALNT4Q76KP1 1039 aa14.38□□□□□ -0.11
SHOX2-205ENST00000490689 C2CD5Q86YS7 1000 aa14.38□□□□□ -0.11
SHOX2-205ENST00000490689 UIMC1Q96RL1 719 aa14.38□□□□□ -0.11
SHOX2-205ENST00000490689 MRPL44Q9H9J2 332 aaKnown RBP14.38□□□□□ -0.11
SHOX2-205ENST00000490689 ADGRB3O60242 1522 aa14.38□□□□□ -0.11
SHOX2-205ENST00000490689 TCHHQ07283 1943 aa14.38□□□□□ -0.11
SHOX2-205ENST00000490689 AMPD3Q01432 767 aa14.38□□□□□ -0.11
SHOX2-205ENST00000490689 ZNF444Q8N0Y2 327 aaPredicted RBP14.38□□□□□ -0.11
SHOX2-205ENST00000490689 RIN2Q8WYP3 895 aaPredicted RBP14.38□□□□□ -0.11
SHOX2-205ENST00000490689 HDAC6Q9UBN7 1215 aa14.38□□□□□ -0.11
SHOX2-205ENST00000490689 SEC63Q9UGP8 760 aaKnown RBP14.38□□□□□ -0.11
SHOX2-205ENST00000490689 COL3A1P02461 1466 aaPredicted RBP14.38□□□□□ -0.11
SHOX2-205ENST00000490689 KIF5BP33176 963 aa14.37□□□□□ -0.11
SHOX2-205ENST00000490689 COPB1P53618 953 aaKnown RBP14.37□□□□□ -0.11
SHOX2-205ENST00000490689 TRIM14Q14142 442 aa14.37□□□□□ -0.11
SHOX2-205ENST00000490689 SRLQ86TD4 932 aa14.37□□□□□ -0.11
SHOX2-205ENST00000490689 ZNF654Q8IZM8 581 aa14.37□□□□□ -0.11
SHOX2-205ENST00000490689 UBLCP1Q8WVY7 318 aaPredicted RBP14.37□□□□□ -0.11
SHOX2-205ENST00000490689 TRIM31Q9BZY9 425 aa14.37□□□□□ -0.11
SHOX2-205ENST00000490689 E7EVH7 732 aa14.37□□□□□ -0.11
SHOX2-205ENST00000490689 FGFR1OPO95684 399 aaKnown RBP14.37□□□□□ -0.11
SHOX2-205ENST00000490689 SLC7A5Q01650 507 aa14.37□□□□□ -0.11
SHOX2-205ENST00000490689 NAA25Q14CX7 972 aa14.37□□□□□ -0.11
SHOX2-205ENST00000490689 IFIH1Q9BYX4 1025 aaKnown RBP14.37□□□□□ -0.11
SHOX2-205ENST00000490689 NLRC4Q9NPP4 1024 aa14.37□□□□□ -0.11
SHOX2-205ENST00000490689 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.37□□□□□ -0.11
SHOX2-205ENST00000490689 EZRP15311 586 aaKnown RBP14.37□□□□□ -0.11
SHOX2-205ENST00000490689 C2orf54Q08AI8 447 aa14.37□□□□□ -0.11
SHOX2-205ENST00000490689 AKNAD1Q5T1N1 836 aa14.37□□□□□ -0.11
SHOX2-205ENST00000490689 RBM43Q6ZSC3 357 aaKnown RBP14.37□□□□□ -0.11
SHOX2-205ENST00000490689 MYCBPQ99417 103 aaPredicted RBP14.37□□□□□ -0.11
SHOX2-205ENST00000490689 SELENOSQ9BQE4 189 aa14.37□□□□□ -0.11
SHOX2-205ENST00000490689 ADGRG1Q9Y653 693 aa14.37□□□□□ -0.11
SHOX2-205ENST00000490689 SETBP1Q9Y6X0 1596 aa14.37□□□□□ -0.11
SHOX2-205ENST00000490689 MYOM1P52179 1685 aa14.37□□□□□ -0.11
SHOX2-205ENST00000490689 SH3TC1Q8TE82 1336 aa14.37□□□□□ -0.11
SHOX2-205ENST00000490689 CALRP27797 417 aaKnown RBP14.37□□□□□ -0.11
SHOX2-205ENST00000490689 PTGDRQ13258 359 aa14.37□□□□□ -0.11
SHOX2-205ENST00000490689 EFCC1Q9HA90 598 aa14.37□□□□□ -0.11
SHOX2-205ENST00000490689 FDPSP14324 419 aaKnown RBP14.36□□□□□ -0.11
SHOX2-205ENST00000490689 PDE6AP16499 860 aa14.36□□□□□ -0.11
SHOX2-205ENST00000490689 MAP3K9P80192 1104 aa14.36□□□□□ -0.11
SHOX2-205ENST00000490689 METTL16Q86W50 562 aaKnown RBP14.36□□□□□ -0.11
SHOX2-205ENST00000490689 POTEDQ86YR6 584 aa14.36□□□□□ -0.11
SHOX2-205ENST00000490689 CCDC51Q96ER9 411 aa14.36□□□□□ -0.11
SHOX2-205ENST00000490689 HAUS4Q9H6D7 363 aa14.36□□□□□ -0.11
SHOX2-205ENST00000490689 MAGEB6P1A0A0J9YX57 407 aa14.36□□□□□ -0.11
SHOX2-205ENST00000490689 BUB1O43683 1085 aa14.36□□□□□ -0.11
SHOX2-205ENST00000490689 NEFHP12036 1026 aa14.36□□□□□ -0.11
SHOX2-205ENST00000490689 MAGEA9P43362 315 aa14.36□□□□□ -0.11
SHOX2-205ENST00000490689 LETM2Q2VYF4 491 aa14.36□□□□□ -0.11
SHOX2-205ENST00000490689 DZIP1Q86YF9 867 aaKnown RBP14.36□□□□□ -0.11
SHOX2-205ENST00000490689 FANCBQ8NB91 859 aa14.36□□□□□ -0.11
SHOX2-205ENST00000490689 ZCRB1Q8TBF4 217 aaKnown RBP14.36□□□□□ -0.11
SHOX2-205ENST00000490689 ZCCHC11Q5TAX3 1644 aaKnown RBP14.36□□□□□ -0.11
SHOX2-205ENST00000490689 FMR1Q06787 632 aaKnown RBP eCLIP14.36□□□□□ -0.11
SHOX2-205ENST00000490689 PDE4BQ07343 736 aa14.36□□□□□ -0.11
SHOX2-205ENST00000490689 MSL1Q68DK7 614 aa14.36□□□□□ -0.11
SHOX2-205ENST00000490689 TRIML1Q8N9V2 468 aa14.36□□□□□ -0.11
SHOX2-205ENST00000490689 TSGA10IPQ3SY00 556 aa14.35□□□□□ -0.11
SHOX2-205ENST00000490689 IFNL3Q8IZI9 196 aa14.35□□□□□ -0.11
SHOX2-205ENST00000490689 BPIFA3Q9BQP9 254 aa14.35□□□□□ -0.11
SHOX2-205ENST00000490689 ERCC5P28715 1186 aaPredicted RBP14.35□□□□□ -0.11
SHOX2-205ENST00000490689 RRAGAQ7L523 313 aa14.35□□□□□ -0.11
SHOX2-205ENST00000490689 REXO1L1PQ8IX06 675 aa14.35□□□□□ -0.11
SHOX2-205ENST00000490689 SDR42E1Q8WUS8 393 aa14.35□□□□□ -0.11
SHOX2-205ENST00000490689 CABS1Q96KC9 395 aa14.35□□□□□ -0.11
SHOX2-205ENST00000490689 MFAP3LO75121 409 aa14.35□□□□□ -0.11
SHOX2-205ENST00000490689 PPFIA4O75335 1185 aa14.35□□□□□ -0.11
SHOX2-205ENST00000490689 RAPGEF1Q13905 1077 aa14.35□□□□□ -0.11
SHOX2-205ENST00000490689 RESP18Q5W5W9 173 aa14.35□□□□□ -0.11
SHOX2-205ENST00000490689 CCDC43Q96MW1 224 aaKnown RBP14.35□□□□□ -0.11
SHOX2-205ENST00000490689 ZSWIM5Q9P217 1185 aa14.35□□□□□ -0.11
SHOX2-205ENST00000490689 MYO3AQ8NEV4 1616 aa14.35□□□□□ -0.11
SHOX2-205ENST00000490689 TMEM266Q2M3C6 531 aa14.34□□□□□ -0.11
SHOX2-205ENST00000490689 TRMT1LQ7Z2T5 733 aaKnown RBP14.34□□□□□ -0.11
SHOX2-205ENST00000490689 DDX17Q92841 729 aaKnown RBP14.34□□□□□ -0.11
SHOX2-205ENST00000490689 TBX22Q9Y458 520 aa14.34□□□□□ -0.11
SHOX2-205ENST00000490689 ZNF609O15014 1411 aa14.34□□□□□ -0.11
SHOX2-205ENST00000490689 CDC27P30260 824 aa14.34□□□□□ -0.11
SHOX2-205ENST00000490689 DYMQ7RTS9 669 aa14.34□□□□□ -0.11
SHOX2-205ENST00000490689 VPS36Q86VN1 386 aa14.34□□□□□ -0.11
SHOX2-205ENST00000490689 USP42Q9H9J4 1324 aaKnown RBP14.34□□□□□ -0.11
SHOX2-205ENST00000490689 B4DLN1 442 aa14.34□□□□□ -0.11
SHOX2-205ENST00000490689 TFRCP02786 760 aaKnown RBP14.34□□□□□ -0.11
SHOX2-205ENST00000490689 PHKA1P46020 1223 aa14.34□□□□□ -0.11
SHOX2-205ENST00000490689 EXOSC10Q01780 885 aaKnown RBP14.34□□□□□ -0.11
SHOX2-205ENST00000490689 PNMA8AQ86V59 439 aaPredicted RBP14.34□□□□□ -0.11
SHOX2-205ENST00000490689 EFCAB13Q8IY85 973 aa14.34□□□□□ -0.11
SHOX2-205ENST00000490689 A0A087WUV0 522 aaPredicted RBP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms