RNA–Protein interactions for RNA: ENST00000488921.5

SPTLC1-207, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 3

Gene SPTLC1, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-207ENST00000488921 APPBP2Q92624 585 aa16.59■□□□□ 0.25
SPTLC1-207ENST00000488921 GCC1Q96CN9 775 aa16.59■□□□□ 0.25
SPTLC1-207ENST00000488921 PUS7LQ9H0K6 701 aaKnown RBP16.59■□□□□ 0.25
SPTLC1-207ENST00000488921 ARPP21Q9UBL0 812 aaPredicted RBP16.59■□□□□ 0.25
SPTLC1-207ENST00000488921 GABRQQ9UN88 632 aa16.59■□□□□ 0.25
SPTLC1-207ENST00000488921 PLXNB2O15031 1838 aa16.59■□□□□ 0.25
SPTLC1-207ENST00000488921 USP17L15C9J2P7 530 aa16.58■□□□□ 0.24
SPTLC1-207ENST00000488921 USP17L13C9JLJ4 530 aa16.58■□□□□ 0.24
SPTLC1-207ENST00000488921 USP17L11C9JVI0 530 aa16.58■□□□□ 0.24
SPTLC1-207ENST00000488921 USP17L18D6R9N7 530 aa16.58■□□□□ 0.24
SPTLC1-207ENST00000488921 USP17L22D6RA61 530 aa16.58■□□□□ 0.24
SPTLC1-207ENST00000488921 USP17L17D6RBQ6 530 aa16.58■□□□□ 0.24
SPTLC1-207ENST00000488921 USP17L19D6RCP7 530 aa16.58■□□□□ 0.24
SPTLC1-207ENST00000488921 USP17L20D6RJB6 530 aa16.58■□□□□ 0.24
SPTLC1-207ENST00000488921 ADCY3O60266 1144 aa16.58■□□□□ 0.24
SPTLC1-207ENST00000488921 MYCP01106 439 aaPredicted RBP16.58■□□□□ 0.24
SPTLC1-207ENST00000488921 CYP2D6P10635 497 aa16.58■□□□□ 0.24
SPTLC1-207ENST00000488921 EN2P19622 333 aaPredicted RBP16.58■□□□□ 0.24
SPTLC1-207ENST00000488921 USP17L24Q0WX57 530 aa16.58■□□□□ 0.24
SPTLC1-207ENST00000488921 C12orf60Q5U649 245 aa16.58■□□□□ 0.24
SPTLC1-207ENST00000488921 NKX2-3Q8TAU0 364 aa16.58■□□□□ 0.24
SPTLC1-207ENST00000488921 CCDC17Q96LX7 622 aa16.58■□□□□ 0.24
SPTLC1-207ENST00000488921 P2RX7Q99572 595 aaKnown RBP16.58■□□□□ 0.24
SPTLC1-207ENST00000488921 USP17L12C9JPN9 530 aa16.57■□□□□ 0.24
SPTLC1-207ENST00000488921 USP17L21D6R901 530 aa16.57■□□□□ 0.24
SPTLC1-207ENST00000488921 RNF113AO15541 343 aaKnown RBP16.57■□□□□ 0.24
SPTLC1-207ENST00000488921 CHGBP05060 677 aa16.57■□□□□ 0.24
SPTLC1-207ENST00000488921 VCAM1P19320 739 aa16.57■□□□□ 0.24
SPTLC1-207ENST00000488921 MX1P20591 662 aa16.57■□□□□ 0.24
SPTLC1-207ENST00000488921 HDAC1Q13547 482 aaPredicted RBP16.57■□□□□ 0.24
SPTLC1-207ENST00000488921 SEPT2Q15019 361 aa16.57■□□□□ 0.24
SPTLC1-207ENST00000488921 PRPF38BQ5VTL8 546 aaKnown RBP16.57■□□□□ 0.24
SPTLC1-207ENST00000488921 GIMAP6Q6P9H5 292 aa16.57■□□□□ 0.24
SPTLC1-207ENST00000488921 C16orf86Q6ZW13 317 aa16.57■□□□□ 0.24
SPTLC1-207ENST00000488921 GPRC5AQ8NFJ5 357 aa16.57■□□□□ 0.24
SPTLC1-207ENST00000488921 PI4K2BQ8TCG2 481 aa16.57■□□□□ 0.24
SPTLC1-207ENST00000488921 SH2D4AQ9H788 454 aa16.57■□□□□ 0.24
SPTLC1-207ENST00000488921 MKI67P46013 3256 aaKnown RBP16.57■□□□□ 0.24
SPTLC1-207ENST00000488921 GREB1LQ9C091 1923 aaPredicted RBP16.57■□□□□ 0.24
SPTLC1-207ENST00000488921 A0A0G2JMZ2 1700 aa16.56■□□□□ 0.24
SPTLC1-207ENST00000488921 GNAT2P19087 354 aa16.56■□□□□ 0.24
SPTLC1-207ENST00000488921 GUCY1A2P33402 732 aa16.56■□□□□ 0.24
SPTLC1-207ENST00000488921 ERVK-9P63128 1117 aa16.56■□□□□ 0.24
SPTLC1-207ENST00000488921 ERVK-24P63145 666 aa16.56■□□□□ 0.24
SPTLC1-207ENST00000488921 EVX2Q03828 476 aa16.56■□□□□ 0.24
SPTLC1-207ENST00000488921 MTFR1Q15390 333 aa16.56■□□□□ 0.24
SPTLC1-207ENST00000488921 CCAR1Q8IX12 1150 aaKnown RBP16.56■□□□□ 0.24
SPTLC1-207ENST00000488921 SLC44A5Q8NCS7 719 aa16.56■□□□□ 0.24
SPTLC1-207ENST00000488921 ACER1Q8TDN7 264 aa16.56■□□□□ 0.24
SPTLC1-207ENST00000488921 DYNLL2Q96FJ2 89 aa16.56■□□□□ 0.24
SPTLC1-207ENST00000488921 STRBPQ96SI9 672 aaKnown RBP16.56■□□□□ 0.24
SPTLC1-207ENST00000488921 ARHGEF10LQ9HCE6 1279 aa16.56■□□□□ 0.24
SPTLC1-207ENST00000488921 PARP14Q460N5 1801 aa16.56■□□□□ 0.24
SPTLC1-207ENST00000488921 CCL5P13501 91 aa16.55■□□□□ 0.24
SPTLC1-207ENST00000488921 MAPK4P31152 587 aa16.55■□□□□ 0.24
SPTLC1-207ENST00000488921 CDK8P49336 464 aa16.55■□□□□ 0.24
SPTLC1-207ENST00000488921 ICA1Q05084 483 aa16.55■□□□□ 0.24
SPTLC1-207ENST00000488921 ANKRD45Q5TZF3 282 aa16.55■□□□□ 0.24
SPTLC1-207ENST00000488921 CTR9Q6PD62 1173 aa16.55■□□□□ 0.24
SPTLC1-207ENST00000488921 CATSPERGQ6ZRH7 1159 aa16.55■□□□□ 0.24
SPTLC1-207ENST00000488921 SOCS4Q8WXH5 440 aa16.55■□□□□ 0.24
SPTLC1-207ENST00000488921 PAGR1Q9BTK6 254 aa16.55■□□□□ 0.24
SPTLC1-207ENST00000488921 FSD1Q9BTV5 496 aa16.55■□□□□ 0.24
SPTLC1-207ENST00000488921 RABGAP1Q9Y3P9 1069 aa16.55■□□□□ 0.24
SPTLC1-207ENST00000488921 ROBO3Q96MS0 1386 aa16.54■□□□□ 0.24
SPTLC1-207ENST00000488921 CYP2D7A0A087X1C5 515 aa16.54■□□□□ 0.24
SPTLC1-207ENST00000488921 GPAA1O43292 621 aa16.54■□□□□ 0.24
SPTLC1-207ENST00000488921 INHAP05111 366 aa16.54■□□□□ 0.24
SPTLC1-207ENST00000488921 GJB1P08034 283 aa16.54■□□□□ 0.24
SPTLC1-207ENST00000488921 AKR1B1P15121 316 aa16.54■□□□□ 0.24
SPTLC1-207ENST00000488921 ELNP15502 786 aa16.54■□□□□ 0.24
SPTLC1-207ENST00000488921 CAPN2P17655 700 aa16.54■□□□□ 0.24
SPTLC1-207ENST00000488921 CCNA1P78396 465 aa16.54■□□□□ 0.24
SPTLC1-207ENST00000488921 SBK1Q52WX2 424 aa16.54■□□□□ 0.24
SPTLC1-207ENST00000488921 LBX2Q6XYB7 198 aa16.54■□□□□ 0.24
SPTLC1-207ENST00000488921 LPAR1Q92633 364 aa16.54■□□□□ 0.24
SPTLC1-207ENST00000488921 OSBP2Q969R2 916 aa16.54■□□□□ 0.24
SPTLC1-207ENST00000488921 RNF208Q9H0X6 261 aa16.54■□□□□ 0.24
SPTLC1-207ENST00000488921 RPAP3Q9H6T3 665 aaPredicted RBP16.54■□□□□ 0.24
SPTLC1-207ENST00000488921 CWC22Q9HCG8 908 aaKnown RBP16.54■□□□□ 0.24
SPTLC1-207ENST00000488921 TXNRD2Q9NNW7 524 aa16.54■□□□□ 0.24
SPTLC1-207ENST00000488921 RBPJLQ9UBG7 517 aa16.54■□□□□ 0.24
SPTLC1-207ENST00000488921 RLFQ13129 1914 aa16.53■□□□□ 0.24
SPTLC1-207ENST00000488921 MYH4Q9Y623 1939 aa16.53■□□□□ 0.24
SPTLC1-207ENST00000488921 SALL3Q9BXA9 1300 aa16.53■□□□□ 0.24
SPTLC1-207ENST00000488921 OTUD7AQ8TE49 926 aaPredicted RBP16.53■□□□□ 0.24
SPTLC1-207ENST00000488921 NUDT12Q9BQG2 462 aa16.53■□□□□ 0.24
SPTLC1-207ENST00000488921 A0A1W2PRG0 241 aa16.52■□□□□ 0.24
SPTLC1-207ENST00000488921 GSG1L2A8MUP6 293 aa16.52■□□□□ 0.24
SPTLC1-207ENST00000488921 HMGCRP04035 888 aa16.52■□□□□ 0.24
SPTLC1-207ENST00000488921 GJA8P48165 433 aa16.52■□□□□ 0.24
SPTLC1-207ENST00000488921 TDO2P48775 406 aa16.52■□□□□ 0.24
SPTLC1-207ENST00000488921 NACAP1Q9BZK3 213 aa16.52■□□□□ 0.24
SPTLC1-207ENST00000488921 TANGO6Q9C0B7 1094 aa16.52■□□□□ 0.24
SPTLC1-207ENST00000488921 ZNF287Q9HBT7 754 aa16.52■□□□□ 0.24
SPTLC1-207ENST00000488921 GJD2Q9UKL4 321 aa16.52■□□□□ 0.24
SPTLC1-207ENST00000488921 ZNF236Q9UL36 1845 aa16.52■□□□□ 0.23
SPTLC1-207ENST00000488921 SPDYE16A6NNV3 312 aaPredicted RBP16.51■□□□□ 0.23
SPTLC1-207ENST00000488921 M0R2C6 588 aa16.51■□□□□ 0.23
SPTLC1-207ENST00000488921 APPP05067 770 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms