RNA–Protein interactions for RNA: ENST00000488186.5

C9orf3-219, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,211 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-219ENST00000488186 WDR18Q9BV38 432 aa18.62■□□□□ 0.57
C9orf3-219ENST00000488186 KANSL2Q9H9L4 492 aa18.62■□□□□ 0.57
C9orf3-219ENST00000488186 ZCCHC17Q9NP64 241 aaKnown RBP18.62■□□□□ 0.57
C9orf3-219ENST00000488186 PRDM10Q9NQV6 1147 aa18.62■□□□□ 0.57
C9orf3-219ENST00000488186 KCNH4Q9UQ05 1017 aa18.62■□□□□ 0.57
C9orf3-219ENST00000488186 USP17L10C9JJH3 530 aa18.61■□□□□ 0.57
C9orf3-219ENST00000488186 FOXN1O15353 648 aa18.61■□□□□ 0.57
C9orf3-219ENST00000488186 ORC4O43929 436 aa18.61■□□□□ 0.57
C9orf3-219ENST00000488186 ICA1Q05084 483 aa18.61■□□□□ 0.57
C9orf3-219ENST00000488186 RNF20Q5VTR2 975 aa18.61■□□□□ 0.57
C9orf3-219ENST00000488186 GADL1Q6ZQY3 521 aa18.61■□□□□ 0.57
C9orf3-219ENST00000488186 FASTKD5Q7L8L6 764 aaKnown RBP18.61■□□□□ 0.57
C9orf3-219ENST00000488186 ESR2Q92731 530 aa18.61■□□□□ 0.57
C9orf3-219ENST00000488186 CNNM2Q9H8M5 875 aa18.61■□□□□ 0.57
C9orf3-219ENST00000488186 ARHGEF10LQ9HCE6 1279 aa18.61■□□□□ 0.57
C9orf3-219ENST00000488186 TMOD4Q9NZQ9 345 aa18.61■□□□□ 0.57
C9orf3-219ENST00000488186 PHIPQ8WWQ0 1821 aa18.6■□□□□ 0.57
C9orf3-219ENST00000488186 C19orf81C9J6K1 198 aa18.6■□□□□ 0.57
C9orf3-219ENST00000488186 PPP4R3BQ5MIZ7 849 aa18.6■□□□□ 0.57
C9orf3-219ENST00000488186 TBC1D10CQ8IV04 446 aa18.6■□□□□ 0.57
C9orf3-219ENST00000488186 KRT23Q9C075 422 aa18.6■□□□□ 0.57
C9orf3-219ENST00000488186 SH2D4AQ9H788 454 aa18.6■□□□□ 0.57
C9orf3-219ENST00000488186 RNF186Q9NXI6 227 aa18.6■□□□□ 0.57
C9orf3-219ENST00000488186 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.6■□□□□ 0.57
C9orf3-219ENST00000488186 ATAD5Q96QE3 1844 aa18.6■□□□□ 0.57
C9orf3-219ENST00000488186 MYH8P13535 1937 aa18.59■□□□□ 0.57
C9orf3-219ENST00000488186 CYP21A2P08686 494 aa18.59■□□□□ 0.57
C9orf3-219ENST00000488186 GUCY1A2P33402 732 aa18.59■□□□□ 0.57
C9orf3-219ENST00000488186 USP14P54578 494 aa18.59■□□□□ 0.57
C9orf3-219ENST00000488186 BACE1P56817 501 aa18.59■□□□□ 0.57
C9orf3-219ENST00000488186 MTMR2Q13614 643 aa18.59■□□□□ 0.57
C9orf3-219ENST00000488186 ZYXQ15942 572 aaKnown RBP18.59■□□□□ 0.57
C9orf3-219ENST00000488186 IFNL1Q8IU54 200 aa18.59■□□□□ 0.57
C9orf3-219ENST00000488186 NEDD1Q8NHV4 660 aa18.59■□□□□ 0.57
C9orf3-219ENST00000488186 PTPRFP10586 1907 aa18.59■□□□□ 0.57
C9orf3-219ENST00000488186 A0A0G2JLL6 359 aaPredicted RBP18.58■□□□□ 0.56
C9orf3-219ENST00000488186 RAD21O60216 631 aa18.58■□□□□ 0.56
C9orf3-219ENST00000488186 FGRP09769 529 aa18.58■□□□□ 0.56
C9orf3-219ENST00000488186 HSPA8P11142 646 aaKnown RBP18.58■□□□□ 0.56
C9orf3-219ENST00000488186 ZKSCAN1P17029 563 aaPredicted RBP18.58■□□□□ 0.56
C9orf3-219ENST00000488186 NT5C2P49902 561 aa18.58■□□□□ 0.56
C9orf3-219ENST00000488186 HMGCS2P54868 508 aa18.58■□□□□ 0.56
C9orf3-219ENST00000488186 USP17L2Q6R6M4 530 aa18.58■□□□□ 0.56
C9orf3-219ENST00000488186 PRRT2Q7Z6L0 340 aaPredicted RBP18.58■□□□□ 0.56
C9orf3-219ENST00000488186 RALYLQ86SE5 291 aaKnown RBP18.58■□□□□ 0.56
C9orf3-219ENST00000488186 BRI3BPQ8WY22 251 aa18.58■□□□□ 0.56
C9orf3-219ENST00000488186 NBPF3Q9H094 633 aa18.58■□□□□ 0.56
C9orf3-219ENST00000488186 CLIP2Q9UDT6 1046 aa18.58■□□□□ 0.56
C9orf3-219ENST00000488186 EEF2P13639 858 aaKnown RBP18.57■□□□□ 0.56
C9orf3-219ENST00000488186 CREB3L3Q68CJ9 461 aa18.57■□□□□ 0.56
C9orf3-219ENST00000488186 ACER1Q8TDN7 264 aa18.57■□□□□ 0.56
C9orf3-219ENST00000488186 TACC3Q9Y6A5 838 aa18.57■□□□□ 0.56
C9orf3-219ENST00000488186 NEDD4P46934 1319 aa18.56■□□□□ 0.56
C9orf3-219ENST00000488186 B4E1Z4 1266 aa18.56■□□□□ 0.56
C9orf3-219ENST00000488186 SLC27A2O14975 620 aa18.56■□□□□ 0.56
C9orf3-219ENST00000488186 KDM4AO75164 1064 aa18.56■□□□□ 0.56
C9orf3-219ENST00000488186 TTLL1O95922 423 aa18.56■□□□□ 0.56
C9orf3-219ENST00000488186 MCCP23508 829 aa18.56■□□□□ 0.56
C9orf3-219ENST00000488186 PABPC4Q13310 644 aaKnown RBP eCLIP18.56■□□□□ 0.56
C9orf3-219ENST00000488186 NECTIN1Q15223 517 aa18.56■□□□□ 0.56
C9orf3-219ENST00000488186 CCDC178Q5BJE1 867 aa18.56■□□□□ 0.56
C9orf3-219ENST00000488186 IQCA1Q86XH1 822 aa18.56■□□□□ 0.56
C9orf3-219ENST00000488186 CLEC10AQ8IUN9 316 aa18.56■□□□□ 0.56
C9orf3-219ENST00000488186 PROCA1Q8NCQ7 364 aaPredicted RBP18.56■□□□□ 0.56
C9orf3-219ENST00000488186 NCOA7Q8NI08 942 aa18.56■□□□□ 0.56
C9orf3-219ENST00000488186 NYAP2Q9P242 653 aa18.56■□□□□ 0.56
C9orf3-219ENST00000488186 STX8Q9UNK0 236 aa18.56■□□□□ 0.56
C9orf3-219ENST00000488186 BTBD19C9JJ37 291 aa18.55■□□□□ 0.56
C9orf3-219ENST00000488186 E7EWF7 191 aa18.55■□□□□ 0.56
C9orf3-219ENST00000488186 TRPA1O75762 1119 aa18.55■□□□□ 0.56
C9orf3-219ENST00000488186 SH3D19Q5HYK7 790 aa18.55■□□□□ 0.56
C9orf3-219ENST00000488186 ANKRD23Q86SG2 305 aa18.55■□□□□ 0.56
C9orf3-219ENST00000488186 CEP95Q96GE4 821 aa18.55■□□□□ 0.56
C9orf3-219ENST00000488186 PTPN18Q99952 460 aa18.55■□□□□ 0.56
C9orf3-219ENST00000488186 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.55■□□□□ 0.56
C9orf3-219ENST00000488186 KIAA1683Q9H0B3 1180 aa18.55■□□□□ 0.56
C9orf3-219ENST00000488186 GOPCQ9HD26 462 aa18.55■□□□□ 0.56
C9orf3-219ENST00000488186 MTMR4Q9NYA4 1195 aa18.55■□□□□ 0.56
C9orf3-219ENST00000488186 PDHXO00330 501 aa18.54■□□□□ 0.56
C9orf3-219ENST00000488186 IGF2BP3O00425 579 aaKnown RBP eCLIP18.54■□□□□ 0.56
C9orf3-219ENST00000488186 UBAC1Q9BSL1 405 aa18.54■□□□□ 0.56
C9orf3-219ENST00000488186 SLC45A1Q9Y2W3 748 aa18.54■□□□□ 0.56
C9orf3-219ENST00000488186 TMX2Q9Y320 296 aa18.54■□□□□ 0.56
C9orf3-219ENST00000488186 IGKV6D-41A0A0C4DH26 115 aa18.53■□□□□ 0.56
C9orf3-219ENST00000488186 A0A1W2PRG0 241 aa18.53■□□□□ 0.56
C9orf3-219ENST00000488186 EPB41L2O43491 1005 aaKnown RBP18.53■□□□□ 0.56
C9orf3-219ENST00000488186 NMT2O60551 498 aa18.53■□□□□ 0.56
C9orf3-219ENST00000488186 OSBPP22059 807 aa18.53■□□□□ 0.56
C9orf3-219ENST00000488186 LBX1P52954 281 aa18.53■□□□□ 0.56
C9orf3-219ENST00000488186 KRT32Q14532 448 aa18.53■□□□□ 0.56
C9orf3-219ENST00000488186 TAF1CQ15572 869 aaPredicted RBP18.53■□□□□ 0.56
C9orf3-219ENST00000488186 FAM43AQ8N2R8 423 aa18.53■□□□□ 0.56
C9orf3-219ENST00000488186 ZKSCAN3Q9BRR0 538 aa18.53■□□□□ 0.56
C9orf3-219ENST00000488186 EMILIN3Q9NT22 766 aa18.53■□□□□ 0.56
C9orf3-219ENST00000488186 TCP11L1Q9NUJ3 509 aa18.53■□□□□ 0.56
C9orf3-219ENST00000488186 ZSWIM5Q9P217 1185 aa18.53■□□□□ 0.56
C9orf3-219ENST00000488186 PNMA3Q9UL41 463 aa18.53■□□□□ 0.56
C9orf3-219ENST00000488186 AGTPBP1Q9UPW5 1226 aa18.53■□□□□ 0.56
C9orf3-219ENST00000488186 PLIN4Q96Q06 1357 aa18.53■□□□□ 0.56
C9orf3-219ENST00000488186 ERICH2A1L162 156 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms