RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 IRF2BP1Q8IU81 584 aa6.94□□□□□ -1.3
SMC4-220ENST00000488017 CXorf38Q8TB03 319 aa6.94□□□□□ -1.3
SMC4-220ENST00000488017 GAL3ST3Q96A11 431 aa6.94□□□□□ -1.3
SMC4-220ENST00000488017 OSBPL7Q9BZF2 842 aa6.94□□□□□ -1.3
SMC4-220ENST00000488017 RTEL1Q9NZ71 1219 aa6.94□□□□□ -1.3
SMC4-220ENST00000488017 WIPI1Q5MNZ9 446 aaPredicted RBP6.93□□□□□ -1.3
SMC4-220ENST00000488017 PRRT2Q7Z6L0 340 aaPredicted RBP6.93□□□□□ -1.3
SMC4-220ENST00000488017 LILRA2Q8N149 483 aa6.93□□□□□ -1.3
SMC4-220ENST00000488017 ADAMTS10Q9H324 1103 aa6.93□□□□□ -1.3
SMC4-220ENST00000488017 PEX10O60683 326 aa6.92□□□□□ -1.3
SMC4-220ENST00000488017 ETV3P41162 512 aa6.92□□□□□ -1.3
SMC4-220ENST00000488017 PDE4CQ08493 712 aa6.92□□□□□ -1.3
SMC4-220ENST00000488017 SKOR2Q2VWA4 1001 aaPredicted RBP6.92□□□□□ -1.3
SMC4-220ENST00000488017 SV2BQ7L1I2 683 aa6.92□□□□□ -1.3
SMC4-220ENST00000488017 CREG2Q8IUH2 290 aa6.92□□□□□ -1.3
SMC4-220ENST00000488017 PDZD8Q8NEN9 1154 aa6.92□□□□□ -1.3
SMC4-220ENST00000488017 RNF32Q9H0A6 362 aa6.92□□□□□ -1.3
SMC4-220ENST00000488017 SLC6A17Q9H1V8 727 aa6.92□□□□□ -1.3
SMC4-220ENST00000488017 TRIT1Q9H3H1 467 aaKnown RBP6.92□□□□□ -1.3
SMC4-220ENST00000488017 SEMA7AO75326 666 aa6.91□□□□□ -1.3
SMC4-220ENST00000488017 GRK4P32298 578 aa6.91□□□□□ -1.3
SMC4-220ENST00000488017 GAB4Q2WGN9 574 aa6.91□□□□□ -1.3
SMC4-220ENST00000488017 ALG1LQ6GMV1 187 aa6.91□□□□□ -1.3
SMC4-220ENST00000488017 CDH24Q86UP0 819 aa6.91□□□□□ -1.3
SMC4-220ENST00000488017 OXR1Q8N573 874 aa6.91□□□□□ -1.3
SMC4-220ENST00000488017 BAHD1Q8TBE0 780 aaPredicted RBP6.91□□□□□ -1.3
SMC4-220ENST00000488017 XAGE3Q8WTP9 111 aa6.91□□□□□ -1.3
SMC4-220ENST00000488017 SP110Q9HB58 689 aa6.91□□□□□ -1.3
SMC4-220ENST00000488017 BIN2Q9UBW5 565 aaPredicted RBP6.91□□□□□ -1.3
SMC4-220ENST00000488017 TPP2P29144 1249 aaPredicted RBP6.9□□□□□ -1.3
SMC4-220ENST00000488017 DLG4P78352 724 aa6.9□□□□□ -1.3
SMC4-220ENST00000488017 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.9□□□□□ -1.3
SMC4-220ENST00000488017 MRPL41Q8IXM3 137 aaKnown RBP6.9□□□□□ -1.3
SMC4-220ENST00000488017 MARCH10Q8NA82 808 aaPredicted RBP6.9□□□□□ -1.3
SMC4-220ENST00000488017 MCOLN1Q9GZU1 580 aa6.9□□□□□ -1.3
SMC4-220ENST00000488017 DUSP15Q9H1R2 295 aaPredicted RBP6.9□□□□□ -1.3
SMC4-220ENST00000488017 CWC22Q9HCG8 908 aaKnown RBP6.9□□□□□ -1.3
SMC4-220ENST00000488017 FAM8A1Q9UBU6 413 aa6.9□□□□□ -1.3
SMC4-220ENST00000488017 SPG7Q9UQ90 795 aa6.9□□□□□ -1.3
SMC4-220ENST00000488017 ADRB1P08588 477 aa6.89□□□□□ -1.31
SMC4-220ENST00000488017 MAPK1P28482 360 aa6.89□□□□□ -1.31
SMC4-220ENST00000488017 KRTAP1-1Q07627 177 aa6.89□□□□□ -1.31
SMC4-220ENST00000488017 NR0B2Q15466 257 aa6.89□□□□□ -1.31
SMC4-220ENST00000488017 SLC6A19Q695T7 634 aa6.89□□□□□ -1.31
SMC4-220ENST00000488017 Q96M66 194 aa6.89□□□□□ -1.31
SMC4-220ENST00000488017 C12orf49Q9H741 205 aa6.89□□□□□ -1.31
SMC4-220ENST00000488017 FITM1A5D6W6 292 aa6.88□□□□□ -1.31
SMC4-220ENST00000488017 GFRA2O00451 464 aa6.88□□□□□ -1.31
SMC4-220ENST00000488017 ZGLP1P0C6A0 271 aa6.88□□□□□ -1.31
SMC4-220ENST00000488017 TRHRP34981 398 aaPredicted RBP6.88□□□□□ -1.31
SMC4-220ENST00000488017 RPS26P62854 115 aaKnown RBP6.88□□□□□ -1.31
SMC4-220ENST00000488017 FMR1Q06787 632 aaKnown RBP eCLIP6.88□□□□□ -1.31
SMC4-220ENST00000488017 TTBK2Q6IQ55 1244 aa6.88□□□□□ -1.31
SMC4-220ENST00000488017 DHX38Q92620 1227 aaKnown RBP6.88□□□□□ -1.31
SMC4-220ENST00000488017 GPR62Q9BZJ7 368 aa6.88□□□□□ -1.31
SMC4-220ENST00000488017 GPATCH2Q9NW75 528 aa6.88□□□□□ -1.31
SMC4-220ENST00000488017 TJP2Q9UDY2 1190 aa6.88□□□□□ -1.31
SMC4-220ENST00000488017 DUSP13Q9UII6 198 aa6.88□□□□□ -1.31
SMC4-220ENST00000488017 TEX51A0A1B0GUA7 166 aa6.87□□□□□ -1.31
SMC4-220ENST00000488017 USP17L7P0C7H9 530 aa6.87□□□□□ -1.31
SMC4-220ENST00000488017 MAPK8P45983 427 aa6.87□□□□□ -1.31
SMC4-220ENST00000488017 CDK8P49336 464 aa6.87□□□□□ -1.31
SMC4-220ENST00000488017 DNAJB8Q8NHS0 232 aa6.87□□□□□ -1.31
SMC4-220ENST00000488017 GNEQ9Y223 722 aaKnown RBP6.87□□□□□ -1.31
SMC4-220ENST00000488017 YBX2Q9Y2T7 364 aaKnown RBP6.87□□□□□ -1.31
SMC4-220ENST00000488017 MYOCOSA0A1B0GUC4 107 aa6.86□□□□□ -1.31
SMC4-220ENST00000488017 WASH4PA8MWX3 477 aa6.86□□□□□ -1.31
SMC4-220ENST00000488017 EGR3Q06889 387 aa6.86□□□□□ -1.31
SMC4-220ENST00000488017 SNX17Q15036 470 aa6.86□□□□□ -1.31
SMC4-220ENST00000488017 ZNF385BQ569K4 471 aa6.86□□□□□ -1.31
SMC4-220ENST00000488017 TCERG1LQ5VWI1 586 aa6.86□□□□□ -1.31
SMC4-220ENST00000488017 TSPYL5Q86VY4 417 aaPredicted RBP6.86□□□□□ -1.31
SMC4-220ENST00000488017 INTS4Q96HW7 963 aaKnown RBP6.86□□□□□ -1.31
SMC4-220ENST00000488017 TMEM87BQ96K49 555 aa6.86□□□□□ -1.31
SMC4-220ENST00000488017 C19orf44Q9H6X5 657 aa6.86□□□□□ -1.31
SMC4-220ENST00000488017 ZNF552Q9H707 407 aaPredicted RBP6.86□□□□□ -1.31
SMC4-220ENST00000488017 CNOT6Q9ULM6 557 aaKnown RBP6.86□□□□□ -1.31
SMC4-220ENST00000488017 CEP131Q9UPN4 1083 aa6.86□□□□□ -1.31
SMC4-220ENST00000488017 RFXAPO00287 272 aa6.85□□□□□ -1.31
SMC4-220ENST00000488017 PGRP06401 933 aa6.85□□□□□ -1.31
SMC4-220ENST00000488017 ATP2B2Q01814 1243 aa6.85□□□□□ -1.31
SMC4-220ENST00000488017 ZNF605Q86T29 641 aa6.85□□□□□ -1.31
SMC4-220ENST00000488017 SPPL2CQ8IUH8 684 aa6.85□□□□□ -1.31
SMC4-220ENST00000488017 TMEM151BQ8IW70 566 aa6.85□□□□□ -1.31
SMC4-220ENST00000488017 SYTL4Q96C24 671 aaPredicted RBP6.85□□□□□ -1.31
SMC4-220ENST00000488017 FRMD6Q96NE9 622 aa6.85□□□□□ -1.31
SMC4-220ENST00000488017 KCNH3Q9ULD8 1083 aa6.85□□□□□ -1.31
SMC4-220ENST00000488017 TTF2Q9UNY4 1162 aaKnown RBP6.85□□□□□ -1.31
SMC4-220ENST00000488017 TRIM13O60858 407 aa6.84□□□□□ -1.31
SMC4-220ENST00000488017 CELA3BP08861 270 aa6.84□□□□□ -1.31
SMC4-220ENST00000488017 LMNB1P20700 586 aa6.84□□□□□ -1.31
SMC4-220ENST00000488017 CHRNEQ04844 493 aa6.84□□□□□ -1.31
SMC4-220ENST00000488017 PDE4BQ07343 736 aa6.84□□□□□ -1.31
SMC4-220ENST00000488017 MCATQ8IVS2 390 aaKnown RBP6.84□□□□□ -1.31
SMC4-220ENST00000488017 ZSCAN29Q8IWY8 852 aaPredicted RBP6.84□□□□□ -1.31
SMC4-220ENST00000488017 SETDB2Q96T68 719 aa6.84□□□□□ -1.31
SMC4-220ENST00000488017 DPH2Q9BQC3 489 aaPredicted RBP6.84□□□□□ -1.31
SMC4-220ENST00000488017 ADAM30Q9UKF2 790 aa6.84□□□□□ -1.31
SMC4-220ENST00000488017 RBAK-RBAKDNI3L0D1 243 aa6.83□□□□□ -1.32
SMC4-220ENST00000488017 TIGD5Q53EQ6 642 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms