RNA–Protein interactions for RNA: ENST00000486828.6

PDLIM7-207, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best)

Gene PDLIM7, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-207ENST00000486828 PRDX5P30044 214 aa20.62■□□□□ 0.89
PDLIM7-207ENST00000486828 TM4SF1P30408 202 aa20.62■□□□□ 0.89
PDLIM7-207ENST00000486828 KRT2P35908 639 aa20.62■□□□□ 0.89
PDLIM7-207ENST00000486828 TMC6Q7Z403 805 aa20.62■□□□□ 0.89
PDLIM7-207ENST00000486828 TSC1Q92574 1164 aa20.62■□□□□ 0.89
PDLIM7-207ENST00000486828 CCNL1Q9UK58 526 aaPredicted RBP20.62■□□□□ 0.89
PDLIM7-207ENST00000486828 SBK1Q52WX2 424 aa20.61■□□□□ 0.89
PDLIM7-207ENST00000486828 TMTC3Q6ZXV5 915 aa20.61■□□□□ 0.89
PDLIM7-207ENST00000486828 ARPP21Q9UBL0 812 aaPredicted RBP20.61■□□□□ 0.89
PDLIM7-207ENST00000486828 PAXBP1Q9Y5B6 917 aa20.61■□□□□ 0.89
PDLIM7-207ENST00000486828 V9GY48 417 aaPredicted RBP20.61■□□□□ 0.89
PDLIM7-207ENST00000486828 FOXN1O15353 648 aa20.61■□□□□ 0.89
PDLIM7-207ENST00000486828 POLR2DO15514 142 aaKnown RBP20.61■□□□□ 0.89
PDLIM7-207ENST00000486828 POSTNQ15063 836 aa20.61■□□□□ 0.89
PDLIM7-207ENST00000486828 CCDC24Q8N4L8 307 aa20.61■□□□□ 0.89
PDLIM7-207ENST00000486828 IRS2Q9Y4H2 1338 aa20.61■□□□□ 0.89
PDLIM7-207ENST00000486828 KIAA1551Q9HCM1 1747 aa20.6■□□□□ 0.89
PDLIM7-207ENST00000486828 TRIM75PA6NK02 468 aa20.6■□□□□ 0.89
PDLIM7-207ENST00000486828 USP27XA6NNY8 438 aa20.6■□□□□ 0.89
PDLIM7-207ENST00000486828 CTIFO43310 598 aaKnown RBP20.6■□□□□ 0.89
PDLIM7-207ENST00000486828 ATP1A3P13637 1013 aa20.6■□□□□ 0.89
PDLIM7-207ENST00000486828 NT5DC1Q5TFE4 455 aa20.6■□□□□ 0.89
PDLIM7-207ENST00000486828 ZNF710Q8N1W2 664 aa20.6■□□□□ 0.89
PDLIM7-207ENST00000486828 ARHGEF1Q92888 912 aaKnown RBP20.6■□□□□ 0.89
PDLIM7-207ENST00000486828 SERTAD1Q9UHV2 236 aa20.6■□□□□ 0.89
PDLIM7-207ENST00000486828 CCDC88AQ3V6T2 1871 aa20.6■□□□□ 0.89
PDLIM7-207ENST00000486828 TNS1Q9HBL0 1735 aaKnown RBP20.6■□□□□ 0.89
PDLIM7-207ENST00000486828 CNTNAP5Q8WYK1 1306 aa20.59■□□□□ 0.89
PDLIM7-207ENST00000486828 PLSCR1O15162 318 aa20.59■□□□□ 0.89
PDLIM7-207ENST00000486828 CBFA2T2O43439 604 aa20.59■□□□□ 0.89
PDLIM7-207ENST00000486828 ATP2B1P20020 1258 aa20.59■□□□□ 0.89
PDLIM7-207ENST00000486828 BMP6P22004 513 aa20.59■□□□□ 0.89
PDLIM7-207ENST00000486828 EVX2Q03828 476 aa20.59■□□□□ 0.89
PDLIM7-207ENST00000486828 ARMCX5Q6P1M9 558 aa20.59■□□□□ 0.89
PDLIM7-207ENST00000486828 NYAP1Q6ZVC0 841 aa20.59■□□□□ 0.89
PDLIM7-207ENST00000486828 MAN1B1Q9UKM7 699 aa20.59■□□□□ 0.89
PDLIM7-207ENST00000486828 CEP135Q66GS9 1140 aa20.59■□□□□ 0.89
PDLIM7-207ENST00000486828 SPTY2D1Q68D10 685 aaPredicted RBP20.59■□□□□ 0.89
PDLIM7-207ENST00000486828 KANK3Q6NY19 840 aa20.59■□□□□ 0.89
PDLIM7-207ENST00000486828 TXNRD3Q86VQ6 643 aa20.59■□□□□ 0.89
PDLIM7-207ENST00000486828 AMIGO3Q86WK7 504 aa20.59■□□□□ 0.89
PDLIM7-207ENST00000486828 CCAR2Q8N163 923 aaKnown RBP20.59■□□□□ 0.89
PDLIM7-207ENST00000486828 CSRNP2Q9H175 543 aa20.59■□□□□ 0.89
PDLIM7-207ENST00000486828 BRMS1Q9HCU9 246 aa20.59■□□□□ 0.89
PDLIM7-207ENST00000486828 TNRC6CQ9HCJ0 1690 aaKnown RBP20.59■□□□□ 0.89
PDLIM7-207ENST00000486828 hCG_1642624A0A1W2PR95 340 aa20.58■□□□□ 0.88
PDLIM7-207ENST00000486828 FAM205CA6NFA0 338 aa20.58■□□□□ 0.88
PDLIM7-207ENST00000486828 ACTN4O43707 911 aaKnown RBP20.58■□□□□ 0.88
PDLIM7-207ENST00000486828 SFPQP23246 707 aaKnown RBP eCLIP20.58■□□□□ 0.88
PDLIM7-207ENST00000486828 SARSP49591 514 aaKnown RBP20.58■□□□□ 0.88
PDLIM7-207ENST00000486828 CTCFLQ8NI51 663 aaPredicted RBP20.58■□□□□ 0.88
PDLIM7-207ENST00000486828 LRRC4BQ9NT99 713 aa20.58■□□□□ 0.88
PDLIM7-207ENST00000486828 IGSF3O75054 1194 aa20.57■□□□□ 0.88
PDLIM7-207ENST00000486828 BMP15O95972 392 aa20.57■□□□□ 0.88
PDLIM7-207ENST00000486828 PRR29P0C7W0 189 aa20.57■□□□□ 0.88
PDLIM7-207ENST00000486828 CYP2D6P10635 497 aa20.57■□□□□ 0.88
PDLIM7-207ENST00000486828 UBASH3AP57075 661 aa20.57■□□□□ 0.88
PDLIM7-207ENST00000486828 PDE4BQ07343 736 aa20.57■□□□□ 0.88
PDLIM7-207ENST00000486828 PTPN14Q15678 1187 aa20.57■□□□□ 0.88
PDLIM7-207ENST00000486828 EARS2Q5JPH6 523 aaKnown RBP20.57■□□□□ 0.88
PDLIM7-207ENST00000486828 CCDC125Q86Z20 511 aa20.57■□□□□ 0.88
PDLIM7-207ENST00000486828 TRIML1Q8N9V2 468 aa20.57■□□□□ 0.88
PDLIM7-207ENST00000486828 SMARCE1Q969G3 411 aa20.57■□□□□ 0.88
PDLIM7-207ENST00000486828 NMT2O60551 498 aa20.57■□□□□ 0.88
PDLIM7-207ENST00000486828 SERPINC1P01008 464 aa20.57■□□□□ 0.88
PDLIM7-207ENST00000486828 KCNJ6P48051 423 aa20.57■□□□□ 0.88
PDLIM7-207ENST00000486828 FAM47AQ5JRC9 791 aa20.57■□□□□ 0.88
PDLIM7-207ENST00000486828 SLC27A3Q5K4L6 730 aa20.57■□□□□ 0.88
PDLIM7-207ENST00000486828 DEFB132Q7Z7B7 95 aa20.57■□□□□ 0.88
PDLIM7-207ENST00000486828 DZIP1Q86YF9 867 aaKnown RBP20.57■□□□□ 0.88
PDLIM7-207ENST00000486828 PROM2Q8N271 834 aa20.57■□□□□ 0.88
PDLIM7-207ENST00000486828 TNFRSF25Q93038 417 aa20.57■□□□□ 0.88
PDLIM7-207ENST00000486828 DACH1Q9UI36 760 aa20.57■□□□□ 0.88
PDLIM7-207ENST00000486828 TAF1LQ8IZX4 1826 aa20.56■□□□□ 0.88
PDLIM7-207ENST00000486828 MORC3Q14149 939 aa20.56■□□□□ 0.88
PDLIM7-207ENST00000486828 NPY5RQ15761 445 aa20.56■□□□□ 0.88
PDLIM7-207ENST00000486828 SRBD1Q8N5C6 995 aaKnown RBP20.56■□□□□ 0.88
PDLIM7-207ENST00000486828 MLKLQ8NB16 471 aa20.56■□□□□ 0.88
PDLIM7-207ENST00000486828 FANCLQ9NW38 375 aa20.56■□□□□ 0.88
PDLIM7-207ENST00000486828 SF3B2Q13435 895 aaKnown RBP20.55■□□□□ 0.88
PDLIM7-207ENST00000486828 TXNRD1Q16881 649 aa20.55■□□□□ 0.88
PDLIM7-207ENST00000486828 USP49Q70CQ1 688 aa20.55■□□□□ 0.88
PDLIM7-207ENST00000486828 DPF2Q92785 391 aa20.55■□□□□ 0.88
PDLIM7-207ENST00000486828 TSPY2A6NKD2 308 aa20.55■□□□□ 0.88
PDLIM7-207ENST00000486828 SOCS7O14512 581 aa20.55■□□□□ 0.88
PDLIM7-207ENST00000486828 NPHP1O15259 732 aa20.55■□□□□ 0.88
PDLIM7-207ENST00000486828 NRDCO43847 1150 aa20.55■□□□□ 0.88
PDLIM7-207ENST00000486828 NT5C2P49902 561 aa20.55■□□□□ 0.88
PDLIM7-207ENST00000486828 PDILTQ8N807 584 aa20.55■□□□□ 0.88
PDLIM7-207ENST00000486828 CCDC112Q8NEF3 446 aa20.55■□□□□ 0.88
PDLIM7-207ENST00000486828 SPATA20Q8TB22 786 aa20.55■□□□□ 0.88
PDLIM7-207ENST00000486828 FERMT2Q96AC1 680 aa20.55■□□□□ 0.88
PDLIM7-207ENST00000486828 TRMT1Q9NXH9 659 aaKnown RBP20.55■□□□□ 0.88
PDLIM7-207ENST00000486828 JAG2Q9Y219 1238 aa20.55■□□□□ 0.88
PDLIM7-207ENST00000486828 EN1Q05925 392 aaPredicted RBP20.54■□□□□ 0.88
PDLIM7-207ENST00000486828 GRAPQ13588 217 aa20.54■□□□□ 0.88
PDLIM7-207ENST00000486828 CFAP100Q494V2 611 aa20.54■□□□□ 0.88
PDLIM7-207ENST00000486828 WDR66Q8TBY9 1149 aa20.54■□□□□ 0.88
PDLIM7-207ENST00000486828 GRAPLQ8TC17 118 aaPredicted RBP20.54■□□□□ 0.88
PDLIM7-207ENST00000486828 MCM9Q9NXL9 1143 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms