RNA–Protein interactions for RNA: ENST00000486572.1

COL1A1-207, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 3

Gene COL1A1, Length 836 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-207ENST00000486572 VPS53Q5VIR6 699 aa21.71■■□□□ 1.07
COL1A1-207ENST00000486572 USP17L2Q6R6M4 530 aa21.71■■□□□ 1.07
COL1A1-207ENST00000486572 ZNF589Q86UQ0 364 aaPredicted RBP21.71■■□□□ 1.07
COL1A1-207ENST00000486572 MCOLN1Q9GZU1 580 aa21.71■■□□□ 1.07
COL1A1-207ENST00000486572 KIAA1683Q9H0B3 1180 aa21.71■■□□□ 1.07
COL1A1-207ENST00000486572 ZNF287Q9HBT7 754 aa21.71■■□□□ 1.07
COL1A1-207ENST00000486572 USP14P54578 494 aa21.7■■□□□ 1.06
COL1A1-207ENST00000486572 PPARAQ07869 468 aa21.7■■□□□ 1.06
COL1A1-207ENST00000486572 CWC27Q6UX04 472 aaKnown RBP21.7■■□□□ 1.06
COL1A1-207ENST00000486572 C17orf99Q6UX52 265 aa21.7■■□□□ 1.06
COL1A1-207ENST00000486572 STK11IPQ8N1F8 1099 aa21.7■■□□□ 1.06
COL1A1-207ENST00000486572 CD99L2Q8TCZ2 262 aa21.7■■□□□ 1.06
COL1A1-207ENST00000486572 ACER1Q8TDN7 264 aa21.7■■□□□ 1.06
COL1A1-207ENST00000486572 SMCR8Q8TEV9 937 aaPredicted RBP21.7■■□□□ 1.06
COL1A1-207ENST00000486572 CCDC136Q96JN2 1154 aa21.7■■□□□ 1.06
COL1A1-207ENST00000486572 MKNK2Q9HBH9 465 aa21.7■■□□□ 1.06
COL1A1-207ENST00000486572 CPA4Q9UI42 421 aa21.7■■□□□ 1.06
COL1A1-207ENST00000486572 SLC3A2P08195 630 aaKnown RBP21.69■■□□□ 1.06
COL1A1-207ENST00000486572 RASA1P20936 1047 aa21.69■■□□□ 1.06
COL1A1-207ENST00000486572 ICA1Q05084 483 aa21.69■■□□□ 1.06
COL1A1-207ENST00000486572 ZYXQ15942 572 aaKnown RBP21.69■■□□□ 1.06
COL1A1-207ENST00000486572 C12orf42Q96LP6 360 aa21.69■■□□□ 1.06
COL1A1-207ENST00000486572 EMILIN3Q9NT22 766 aa21.69■■□□□ 1.06
COL1A1-207ENST00000486572 HSPD1P10809 573 aaKnown RBP21.68■■□□□ 1.06
COL1A1-207ENST00000486572 ALX1Q15699 326 aa21.68■■□□□ 1.06
COL1A1-207ENST00000486572 ZMYM6O95789 1325 aa21.68■■□□□ 1.06
COL1A1-207ENST00000486572 OSBPP22059 807 aa21.67■■□□□ 1.06
COL1A1-207ENST00000486572 HOXA7P31268 230 aaPredicted RBP21.67■■□□□ 1.06
COL1A1-207ENST00000486572 LACTBP83111 547 aaPredicted RBP21.67■■□□□ 1.06
COL1A1-207ENST00000486572 PDE4BQ07343 736 aa21.67■■□□□ 1.06
COL1A1-207ENST00000486572 PKN2Q16513 984 aaKnown RBP21.67■■□□□ 1.06
COL1A1-207ENST00000486572 CLEC10AQ8IUN9 316 aa21.67■■□□□ 1.06
COL1A1-207ENST00000486572 ASCC2Q9H1I8 757 aaPredicted RBP21.67■■□□□ 1.06
COL1A1-207ENST00000486572 ARHGEF10LQ9HCE6 1279 aa21.67■■□□□ 1.06
COL1A1-207ENST00000486572 GREB1LQ9C091 1923 aaPredicted RBP21.67■■□□□ 1.06
COL1A1-207ENST00000486572 A0A1W2PRG0 241 aa21.66■■□□□ 1.06
COL1A1-207ENST00000486572 PRDM1O75626 825 aa21.66■■□□□ 1.06
COL1A1-207ENST00000486572 BCRP11274 1271 aa21.66■■□□□ 1.06
COL1A1-207ENST00000486572 IRX3P78415 501 aaPredicted RBP21.66■■□□□ 1.06
COL1A1-207ENST00000486572 KIF22Q14807 665 aa21.66■■□□□ 1.06
COL1A1-207ENST00000486572 OTOP1Q7RTM1 612 aa21.66■■□□□ 1.06
COL1A1-207ENST00000486572 ABHD8Q96I13 439 aa21.66■■□□□ 1.06
COL1A1-207ENST00000486572 SH2D4AQ9H788 454 aa21.66■■□□□ 1.06
COL1A1-207ENST00000486572 KANSL2Q9H9L4 492 aa21.66■■□□□ 1.06
COL1A1-207ENST00000486572 TRIM17Q9Y577 477 aa21.66■■□□□ 1.06
COL1A1-207ENST00000486572 FGAP02671 866 aa21.65■■□□□ 1.06
COL1A1-207ENST00000486572 VCAM1P19320 739 aa21.65■■□□□ 1.06
COL1A1-207ENST00000486572 ARHGEF6Q15052 776 aa21.65■■□□□ 1.06
COL1A1-207ENST00000486572 ZNF444Q8N0Y2 327 aaPredicted RBP21.65■■□□□ 1.06
COL1A1-207ENST00000486572 EFCC1Q9HA90 598 aa21.65■■□□□ 1.06
COL1A1-207ENST00000486572 ANAPC4Q9UJX5 808 aa21.65■■□□□ 1.06
COL1A1-207ENST00000486572 GCLCP48506 637 aaPredicted RBP21.64■■□□□ 1.05
COL1A1-207ENST00000486572 CAP1Q01518 475 aa21.64■■□□□ 1.05
COL1A1-207ENST00000486572 SIAH1Q8IUQ4 282 aa21.64■■□□□ 1.05
COL1A1-207ENST00000486572 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.64■■□□□ 1.05
COL1A1-207ENST00000486572 TMX2Q9Y320 296 aa21.64■■□□□ 1.05
COL1A1-207ENST00000486572 RAD50Q92878 1312 aa21.63■■□□□ 1.05
COL1A1-207ENST00000486572 EEF2P13639 858 aaKnown RBP21.63■■□□□ 1.05
COL1A1-207ENST00000486572 CTDSPL2Q05D32 466 aa21.63■■□□□ 1.05
COL1A1-207ENST00000486572 FBXO46Q6PJ61 603 aaPredicted RBP21.63■■□□□ 1.05
COL1A1-207ENST00000486572 ARHGAP39Q9C0H5 1083 aa21.63■■□□□ 1.05
COL1A1-207ENST00000486572 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.63■■□□□ 1.05
COL1A1-207ENST00000486572 PLIN4Q96Q06 1357 aa21.62■■□□□ 1.05
COL1A1-207ENST00000486572 ZSWIM8A7E2V4 1837 aa21.62■■□□□ 1.05
COL1A1-207ENST00000486572 USP17L15C9J2P7 530 aa21.62■■□□□ 1.05
COL1A1-207ENST00000486572 USP17L13C9JLJ4 530 aa21.62■■□□□ 1.05
COL1A1-207ENST00000486572 USP17L11C9JVI0 530 aa21.62■■□□□ 1.05
COL1A1-207ENST00000486572 USP17L18D6R9N7 530 aa21.62■■□□□ 1.05
COL1A1-207ENST00000486572 USP17L22D6RA61 530 aa21.62■■□□□ 1.05
COL1A1-207ENST00000486572 USP17L17D6RBQ6 530 aa21.62■■□□□ 1.05
COL1A1-207ENST00000486572 USP17L19D6RCP7 530 aa21.62■■□□□ 1.05
COL1A1-207ENST00000486572 USP17L20D6RJB6 530 aa21.62■■□□□ 1.05
COL1A1-207ENST00000486572 ATP2B2Q01814 1243 aa21.62■■□□□ 1.05
COL1A1-207ENST00000486572 USP17L24Q0WX57 530 aa21.62■■□□□ 1.05
COL1A1-207ENST00000486572 FAM110CQ1W6H9 321 aa21.62■■□□□ 1.05
COL1A1-207ENST00000486572 ANKRD13CQ8N6S4 541 aa21.62■■□□□ 1.05
COL1A1-207ENST00000486572 LPAR1Q92633 364 aa21.62■■□□□ 1.05
COL1A1-207ENST00000486572 GNRH1P01148 92 aa21.61■■□□□ 1.05
COL1A1-207ENST00000486572 TSPY3P0CV98 308 aa21.61■■□□□ 1.05
COL1A1-207ENST00000486572 TSPY8P0CW00 308 aa21.61■■□□□ 1.05
COL1A1-207ENST00000486572 CHMLP26374 656 aa21.61■■□□□ 1.05
COL1A1-207ENST00000486572 HERVK_113P62684 666 aa21.61■■□□□ 1.05
COL1A1-207ENST00000486572 IFFO2Q5TF58 517 aa21.61■■□□□ 1.05
COL1A1-207ENST00000486572 SKAP1Q86WV1 359 aa21.61■■□□□ 1.05
COL1A1-207ENST00000486572 RUFY2Q8WXA3 655 aa21.61■■□□□ 1.05
COL1A1-207ENST00000486572 P2RX7Q99572 595 aaKnown RBP21.61■■□□□ 1.05
COL1A1-207ENST00000486572 DSCC1Q9BVC3 393 aa21.61■■□□□ 1.05
COL1A1-207ENST00000486572 RPAP3Q9H6T3 665 aaPredicted RBP21.61■■□□□ 1.05
COL1A1-207ENST00000486572 VCPKMTQ9H867 229 aa21.61■■□□□ 1.05
COL1A1-207ENST00000486572 IGKV6D-41A0A0C4DH26 115 aa21.6■■□□□ 1.05
COL1A1-207ENST00000486572 PSMC4P43686 418 aa21.6■■□□□ 1.05
COL1A1-207ENST00000486572 CATSPERGQ6ZRH7 1159 aa21.6■■□□□ 1.05
COL1A1-207ENST00000486572 NEDD1Q8NHV4 660 aa21.6■■□□□ 1.05
COL1A1-207ENST00000486572 GTF3C2Q8WUA4 911 aaPredicted RBP21.6■■□□□ 1.05
COL1A1-207ENST00000486572 IL25Q9H293 177 aa21.6■■□□□ 1.05
COL1A1-207ENST00000486572 NYAP2Q9P242 653 aa21.6■■□□□ 1.05
COL1A1-207ENST00000486572 ORC4O43929 436 aa21.59■■□□□ 1.05
COL1A1-207ENST00000486572 ECM2O94769 699 aaPredicted RBP21.59■■□□□ 1.05
COL1A1-207ENST00000486572 CTGFP29279 349 aa21.59■■□□□ 1.05
COL1A1-207ENST00000486572 FCGRTP55899 365 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms