RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 MKNK2Q9HBH9 465 aa17.6■□□□□ 0.41
USP4-212ENST00000486549 TMOD4Q9NZQ9 345 aa17.6■□□□□ 0.41
USP4-212ENST00000486549 TAOK2Q9UL54 1235 aa17.6■□□□□ 0.41
USP4-212ENST00000486549 PRDM1O75626 825 aa17.59■□□□□ 0.41
USP4-212ENST00000486549 CYP2C8P10632 490 aa17.59■□□□□ 0.41
USP4-212ENST00000486549 MFAP1P55081 439 aaKnown RBP17.59■□□□□ 0.41
USP4-212ENST00000486549 SP3Q02447 781 aa17.59■□□□□ 0.41
USP4-212ENST00000486549 MLLT1Q03111 559 aaPredicted RBP17.59■□□□□ 0.41
USP4-212ENST00000486549 TMEM179Q6ZVK1 233 aa17.59■□□□□ 0.41
USP4-212ENST00000486549 CLEC10AQ8IUN9 316 aa17.59■□□□□ 0.41
USP4-212ENST00000486549 PROCA1Q8NCQ7 364 aaPredicted RBP17.59■□□□□ 0.41
USP4-212ENST00000486549 PARK7Q99497 189 aaKnown RBP17.59■□□□□ 0.41
USP4-212ENST00000486549 AGTPBP1Q9UPW5 1226 aa17.59■□□□□ 0.41
USP4-212ENST00000486549 HSPD1P10809 573 aaKnown RBP17.58■□□□□ 0.4
USP4-212ENST00000486549 CTDSPL2Q05D32 466 aa17.58■□□□□ 0.4
USP4-212ENST00000486549 SH3D19Q5HYK7 790 aa17.58■□□□□ 0.4
USP4-212ENST00000486549 ACER1Q8TDN7 264 aa17.58■□□□□ 0.4
USP4-212ENST00000486549 CCDC17Q96LX7 622 aa17.58■□□□□ 0.4
USP4-212ENST00000486549 HPS5Q9UPZ3 1129 aa17.58■□□□□ 0.4
USP4-212ENST00000486549 C19orf81C9J6K1 198 aa17.57■□□□□ 0.4
USP4-212ENST00000486549 TLR2O60603 784 aa17.57■□□□□ 0.4
USP4-212ENST00000486549 SLC3A2P08195 630 aaKnown RBP17.57■□□□□ 0.4
USP4-212ENST00000486549 RASA1P20936 1047 aa17.57■□□□□ 0.4
USP4-212ENST00000486549 ICA1Q05084 483 aa17.57■□□□□ 0.4
USP4-212ENST00000486549 USP17L2Q6R6M4 530 aa17.57■□□□□ 0.4
USP4-212ENST00000486549 CPA4Q9UI42 421 aa17.57■□□□□ 0.4
USP4-212ENST00000486549 GREB1LQ9C091 1923 aaPredicted RBP17.57■□□□□ 0.4
USP4-212ENST00000486549 ECM2O94769 699 aaPredicted RBP17.56■□□□□ 0.4
USP4-212ENST00000486549 FGAP02671 866 aa17.56■□□□□ 0.4
USP4-212ENST00000486549 ATP2B2Q01814 1243 aa17.56■□□□□ 0.4
USP4-212ENST00000486549 PDE4BQ07343 736 aa17.56■□□□□ 0.4
USP4-212ENST00000486549 KIF22Q14807 665 aa17.56■□□□□ 0.4
USP4-212ENST00000486549 ZNF444Q8N0Y2 327 aaPredicted RBP17.56■□□□□ 0.4
USP4-212ENST00000486549 CD99L2Q8TCZ2 262 aa17.56■□□□□ 0.4
USP4-212ENST00000486549 SMCR8Q8TEV9 937 aaPredicted RBP17.56■□□□□ 0.4
USP4-212ENST00000486549 IL25Q9H293 177 aa17.56■□□□□ 0.4
USP4-212ENST00000486549 ZNF287Q9HBT7 754 aa17.56■□□□□ 0.4
USP4-212ENST00000486549 SLC45A1Q9Y2W3 748 aa17.56■□□□□ 0.4
USP4-212ENST00000486549 TRIM17Q9Y577 477 aa17.56■□□□□ 0.4
USP4-212ENST00000486549 ZSWIM8A7E2V4 1837 aa17.56■□□□□ 0.4
USP4-212ENST00000486549 ADGRA2Q96PE1 1338 aa17.55■□□□□ 0.4
USP4-212ENST00000486549 CHMLP26374 656 aa17.55■□□□□ 0.4
USP4-212ENST00000486549 USP14P54578 494 aa17.55■□□□□ 0.4
USP4-212ENST00000486549 PABPC4Q13310 644 aaKnown RBP eCLIP17.55■□□□□ 0.4
USP4-212ENST00000486549 ALX1Q15699 326 aa17.55■□□□□ 0.4
USP4-212ENST00000486549 KIAA1683Q9H0B3 1180 aa17.55■□□□□ 0.4
USP4-212ENST00000486549 EFCC1Q9HA90 598 aa17.55■□□□□ 0.4
USP4-212ENST00000486549 ARHGEF10LQ9HCE6 1279 aa17.55■□□□□ 0.4
USP4-212ENST00000486549 EMILIN3Q9NT22 766 aa17.55■□□□□ 0.4
USP4-212ENST00000486549 PPP4R2Q9NY27 417 aa17.55■□□□□ 0.4
USP4-212ENST00000486549 PNMA3Q9UL41 463 aa17.55■□□□□ 0.4
USP4-212ENST00000486549 LAMA4Q16363 1823 aa17.55■□□□□ 0.4
USP4-212ENST00000486549 ZMYM6O95789 1325 aa17.54■□□□□ 0.4
USP4-212ENST00000486549 A0A1W2PRG0 241 aa17.54■□□□□ 0.4
USP4-212ENST00000486549 GNRH1P01148 92 aa17.54■□□□□ 0.4
USP4-212ENST00000486549 OSBPP22059 807 aa17.54■□□□□ 0.4
USP4-212ENST00000486549 HAND2P61296 217 aa17.54■□□□□ 0.4
USP4-212ENST00000486549 OTOP1Q7RTM1 612 aa17.54■□□□□ 0.4
USP4-212ENST00000486549 ASCC2Q9H1I8 757 aaPredicted RBP17.54■□□□□ 0.4
USP4-212ENST00000486549 INCENPQ9NQS7 918 aa17.54■□□□□ 0.4
USP4-212ENST00000486549 RAD50Q92878 1312 aa17.53■□□□□ 0.4
USP4-212ENST00000486549 MYH4Q9Y623 1939 aa17.53■□□□□ 0.4
USP4-212ENST00000486549 EEF2P13639 858 aaKnown RBP17.53■□□□□ 0.4
USP4-212ENST00000486549 IRX3P78415 501 aaPredicted RBP17.53■□□□□ 0.4
USP4-212ENST00000486549 FAM47AQ5JRC9 791 aa17.53■□□□□ 0.4
USP4-212ENST00000486549 ERICH6BQ5W0A0 696 aa17.53■□□□□ 0.4
USP4-212ENST00000486549 C17orf99Q6UX52 265 aa17.53■□□□□ 0.4
USP4-212ENST00000486549 RUFY2Q8WXA3 655 aa17.53■□□□□ 0.4
USP4-212ENST00000486549 KANSL2Q9H9L4 492 aa17.53■□□□□ 0.4
USP4-212ENST00000486549 TOMM22Q9NS69 142 aa17.53■□□□□ 0.4
USP4-212ENST00000486549 RAD21O60216 631 aa17.52■□□□□ 0.4
USP4-212ENST00000486549 TSPY3P0CV98 308 aa17.52■□□□□ 0.4
USP4-212ENST00000486549 TSPY8P0CW00 308 aa17.52■□□□□ 0.4
USP4-212ENST00000486549 VCAM1P19320 739 aa17.52■□□□□ 0.4
USP4-212ENST00000486549 SIAH1Q8IUQ4 282 aa17.52■□□□□ 0.4
USP4-212ENST00000486549 C12orf42Q96LP6 360 aa17.52■□□□□ 0.4
USP4-212ENST00000486549 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.52■□□□□ 0.4
USP4-212ENST00000486549 SH2D4AQ9H788 454 aa17.52■□□□□ 0.4
USP4-212ENST00000486549 ANAPC4Q9UJX5 808 aa17.52■□□□□ 0.4
USP4-212ENST00000486549 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.52■□□□□ 0.4
USP4-212ENST00000486549 TFAP4Q01664 338 aa17.51■□□□□ 0.39
USP4-212ENST00000486549 BMP2KLQ5H9B9 411 aa17.51■□□□□ 0.39
USP4-212ENST00000486549 RRP12Q5JTH9 1297 aaKnown RBP17.51■□□□□ 0.39
USP4-212ENST00000486549 DSCC1Q9BVC3 393 aa17.51■□□□□ 0.39
USP4-212ENST00000486549 ARHGAP39Q9C0H5 1083 aa17.51■□□□□ 0.39
USP4-212ENST00000486549 RPAP3Q9H6T3 665 aaPredicted RBP17.51■□□□□ 0.39
USP4-212ENST00000486549 PTPN22Q9Y2R2 807 aa17.51■□□□□ 0.39
USP4-212ENST00000486549 TMX2Q9Y320 296 aa17.51■□□□□ 0.39
USP4-212ENST00000486549 TACC3Q9Y6A5 838 aa17.51■□□□□ 0.39
USP4-212ENST00000486549 MGAMO43451 1857 aa17.5■□□□□ 0.39
USP4-212ENST00000486549 TSPY2A6NKD2 308 aa17.5■□□□□ 0.39
USP4-212ENST00000486549 RANBP6O60518 1105 aaKnown RBP17.5■□□□□ 0.39
USP4-212ENST00000486549 BCRP11274 1271 aa17.5■□□□□ 0.39
USP4-212ENST00000486549 HOXA7P31268 230 aaPredicted RBP17.5■□□□□ 0.39
USP4-212ENST00000486549 PRMT2P55345 433 aa17.5■□□□□ 0.39
USP4-212ENST00000486549 LACTBP83111 547 aaPredicted RBP17.5■□□□□ 0.39
USP4-212ENST00000486549 CAP1Q01518 475 aa17.5■□□□□ 0.39
USP4-212ENST00000486549 NBPF11Q86T75 865 aa17.5■□□□□ 0.39
USP4-212ENST00000486549 SPICE1Q8N0Z3 855 aa17.5■□□□□ 0.39
USP4-212ENST00000486549 ANKRD13CQ8N6S4 541 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms