RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 HOXD10P28358 340 aa8.46□□□□□ -1.06
VPS50-218ENST00000485994 BACE1P56817 501 aa8.46□□□□□ -1.06
VPS50-218ENST00000485994 SPP2Q13103 211 aa8.46□□□□□ -1.06
VPS50-218ENST00000485994 PABPC4Q13310 644 aaKnown RBP eCLIP8.46□□□□□ -1.06
VPS50-218ENST00000485994 CRACR2BQ8N4Y2 399 aaPredicted RBP8.46□□□□□ -1.06
VPS50-218ENST00000485994 MIGA1Q8NAN2 632 aa8.46□□□□□ -1.06
VPS50-218ENST00000485994 GPATCH3Q96I76 525 aa8.46□□□□□ -1.06
VPS50-218ENST00000485994 ZFP91Q96JP5 570 aaPredicted RBP8.46□□□□□ -1.06
VPS50-218ENST00000485994 PARK7Q99497 189 aaKnown RBP8.46□□□□□ -1.06
VPS50-218ENST00000485994 DNAJC2Q99543 621 aaKnown RBP8.46□□□□□ -1.06
VPS50-218ENST00000485994 DCP1AQ9NPI6 582 aaPredicted RBP8.46□□□□□ -1.06
VPS50-218ENST00000485994 ATAD5Q96QE3 1844 aa8.45□□□□□ -1.06
VPS50-218ENST00000485994 FAM196BA6NMK8 535 aa8.45□□□□□ -1.06
VPS50-218ENST00000485994 USP17L10C9JJH3 530 aa8.45□□□□□ -1.06
VPS50-218ENST00000485994 ERC2O15083 957 aa8.45□□□□□ -1.06
VPS50-218ENST00000485994 CAPN2P17655 700 aa8.45□□□□□ -1.06
VPS50-218ENST00000485994 PLCD1P51178 756 aa8.45□□□□□ -1.06
VPS50-218ENST00000485994 CAP1Q01518 475 aa8.45□□□□□ -1.06
VPS50-218ENST00000485994 LRRFIP1Q32MZ4 808 aaKnown RBP8.45□□□□□ -1.06
VPS50-218ENST00000485994 CERKLQ49MI3 558 aaPredicted RBP8.45□□□□□ -1.06
VPS50-218ENST00000485994 GIMAP6Q6P9H5 292 aa8.45□□□□□ -1.06
VPS50-218ENST00000485994 NBPF11Q86T75 865 aa8.45□□□□□ -1.06
VPS50-218ENST00000485994 KBTBD3Q8NAB2 608 aa8.45□□□□□ -1.06
VPS50-218ENST00000485994 ARMC5Q96C12 935 aa8.45□□□□□ -1.06
VPS50-218ENST00000485994 EDC3Q96F86 508 aaKnown RBP8.45□□□□□ -1.06
VPS50-218ENST00000485994 TRIM34Q9BYJ4 488 aa8.45□□□□□ -1.06
VPS50-218ENST00000485994 PLA2G2EQ9NZK7 142 aa8.45□□□□□ -1.06
VPS50-218ENST00000485994 STAP2Q9UGK3 403 aa8.45□□□□□ -1.06
VPS50-218ENST00000485994 PNMA3Q9UL41 463 aa8.45□□□□□ -1.06
VPS50-218ENST00000485994 TRIM75PA6NK02 468 aa8.44□□□□□ -1.06
VPS50-218ENST00000485994 GLRX3O76003 335 aaKnown RBP8.44□□□□□ -1.06
VPS50-218ENST00000485994 POLR3DP05423 398 aaPredicted RBP8.44□□□□□ -1.06
VPS50-218ENST00000485994 PSMC4P43686 418 aa8.44□□□□□ -1.06
VPS50-218ENST00000485994 GCLCP48506 637 aaPredicted RBP8.44□□□□□ -1.06
VPS50-218ENST00000485994 JAG1P78504 1218 aa8.44□□□□□ -1.06
VPS50-218ENST00000485994 MLLT1Q03111 559 aaPredicted RBP8.44□□□□□ -1.06
VPS50-218ENST00000485994 GADL1Q6ZQY3 521 aa8.44□□□□□ -1.06
VPS50-218ENST00000485994 C12orf42Q96LP6 360 aa8.44□□□□□ -1.06
VPS50-218ENST00000485994 CCDC17Q96LX7 622 aa8.44□□□□□ -1.06
VPS50-218ENST00000485994 CRBNQ96SW2 442 aa8.44□□□□□ -1.06
VPS50-218ENST00000485994 CABP5Q9NP86 173 aa8.44□□□□□ -1.06
VPS50-218ENST00000485994 MCM9Q9NXL9 1143 aa8.44□□□□□ -1.06
VPS50-218ENST00000485994 SRRDQ9UH36 339 aa8.44□□□□□ -1.06
VPS50-218ENST00000485994 SWAP70Q9UH65 585 aa8.44□□□□□ -1.06
VPS50-218ENST00000485994 SAP30BPQ9UHR5 308 aaKnown RBP8.44□□□□□ -1.06
VPS50-218ENST00000485994 ZBTB21Q9ULJ3 1066 aa8.44□□□□□ -1.06
VPS50-218ENST00000485994 SALL3Q9BXA9 1300 aa8.44□□□□□ -1.06
VPS50-218ENST00000485994 HTTP42858 3142 aa8.44□□□□□ -1.06
VPS50-218ENST00000485994 MGAMO43451 1857 aa8.43□□□□□ -1.06
VPS50-218ENST00000485994 RNF113AO15541 343 aaKnown RBP8.43□□□□□ -1.06
VPS50-218ENST00000485994 CYP2C8P10632 490 aa8.43□□□□□ -1.06
VPS50-218ENST00000485994 GNAT2P19087 354 aa8.43□□□□□ -1.06
VPS50-218ENST00000485994 OSBPP22059 807 aa8.43□□□□□ -1.06
VPS50-218ENST00000485994 CTGFP29279 349 aa8.43□□□□□ -1.06
VPS50-218ENST00000485994 SHMT1P34896 483 aa8.43□□□□□ -1.06
VPS50-218ENST00000485994 USP14P54578 494 aa8.43□□□□□ -1.06
VPS50-218ENST00000485994 HMGCS2P54868 508 aa8.43□□□□□ -1.06
VPS50-218ENST00000485994 FAM110CQ1W6H9 321 aa8.43□□□□□ -1.06
VPS50-218ENST00000485994 SBK1Q52WX2 424 aa8.43□□□□□ -1.06
VPS50-218ENST00000485994 C12orf60Q5U649 245 aa8.43□□□□□ -1.06
VPS50-218ENST00000485994 USP17L2Q6R6M4 530 aa8.43□□□□□ -1.06
VPS50-218ENST00000485994 SMC5Q8IY18 1101 aa8.43□□□□□ -1.06
VPS50-218ENST00000485994 LCORLQ8N3X6 602 aa8.43□□□□□ -1.06
VPS50-218ENST00000485994 PI4K2BQ8TCG2 481 aa8.43□□□□□ -1.06
VPS50-218ENST00000485994 GTF3C2Q8WUA4 911 aaPredicted RBP8.43□□□□□ -1.06
VPS50-218ENST00000485994 APPBP2Q92624 585 aa8.43□□□□□ -1.06
VPS50-218ENST00000485994 TRIM47Q96LD4 638 aa8.43□□□□□ -1.06
VPS50-218ENST00000485994 STRBPQ96SI9 672 aaKnown RBP8.43□□□□□ -1.06
VPS50-218ENST00000485994 KIAA1683Q9H0B3 1180 aa8.43□□□□□ -1.06
VPS50-218ENST00000485994 PUS7LQ9H0K6 701 aaKnown RBP8.43□□□□□ -1.06
VPS50-218ENST00000485994 RWDD1Q9H446 243 aaPredicted RBP8.43□□□□□ -1.06
VPS50-218ENST00000485994 MORF4L1Q9UBU8 362 aa8.43□□□□□ -1.06
VPS50-218ENST00000485994 CPA4Q9UI42 421 aa8.43□□□□□ -1.06
VPS50-218ENST00000485994 LOC285556D6RIA3 1793 aa8.43□□□□□ -1.06
VPS50-218ENST00000485994 CENPFP49454 3210 aa8.42□□□□□ -1.06
VPS50-218ENST00000485994 MBD4O95243 580 aa8.42□□□□□ -1.06
VPS50-218ENST00000485994 GDF11O95390 407 aa8.42□□□□□ -1.06
VPS50-218ENST00000485994 GH2P01242 217 aa8.42□□□□□ -1.06
VPS50-218ENST00000485994 GUCY1A2P33402 732 aa8.42□□□□□ -1.06
VPS50-218ENST00000485994 FCGRTP55899 365 aa8.42□□□□□ -1.06
VPS50-218ENST00000485994 IRF5Q13568 498 aa8.42□□□□□ -1.06
VPS50-218ENST00000485994 ABCB5Q2M3G0 1257 aa8.42□□□□□ -1.06
VPS50-218ENST00000485994 TREML2Q5T2D2 321 aa8.42□□□□□ -1.06
VPS50-218ENST00000485994 ANKRD45Q5TZF3 282 aa8.42□□□□□ -1.06
VPS50-218ENST00000485994 CTR9Q6PD62 1173 aa8.42□□□□□ -1.06
VPS50-218ENST00000485994 LBX2Q6XYB7 198 aa8.42□□□□□ -1.06
VPS50-218ENST00000485994 C16orf86Q6ZW13 317 aa8.42□□□□□ -1.06
VPS50-218ENST00000485994 CCDC84Q86UT8 332 aaPredicted RBP8.42□□□□□ -1.06
VPS50-218ENST00000485994 PXYLP1Q8TE99 480 aa8.42□□□□□ -1.06
VPS50-218ENST00000485994 SDR42E1Q8WUS8 393 aa8.42□□□□□ -1.06
VPS50-218ENST00000485994 OSBP2Q969R2 916 aa8.42□□□□□ -1.06
VPS50-218ENST00000485994 DDRGK1Q96HY6 314 aa8.42□□□□□ -1.06
VPS50-218ENST00000485994 ZNF333Q96JL9 665 aa8.42□□□□□ -1.06
VPS50-218ENST00000485994 ASCC2Q9H1I8 757 aaPredicted RBP8.42□□□□□ -1.06
VPS50-218ENST00000485994 ARMT1Q9H993 441 aa8.42□□□□□ -1.06
VPS50-218ENST00000485994 EMILIN3Q9NT22 766 aa8.42□□□□□ -1.06
VPS50-218ENST00000485994 TMOD4Q9NZQ9 345 aa8.42□□□□□ -1.06
VPS50-218ENST00000485994 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.42□□□□□ -1.06
VPS50-218ENST00000485994 BAZ2AQ9UIF9 1905 aaKnown RBP8.42□□□□□ -1.06
VPS50-218ENST00000485994 DDX60LQ5H9U9 1706 aaKnown RBP8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms