RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 PI4K2BQ8TCG2 481 aa6.86□□□□□ -1.31
VPS41-213ENST00000485955 Q96M66 194 aa6.86□□□□□ -1.31
VPS41-213ENST00000485955 ATP13A1Q9HD20 1204 aa6.86□□□□□ -1.31
VPS41-213ENST00000485955 UBP1Q9NZI7 540 aa6.86□□□□□ -1.31
VPS41-213ENST00000485955 KLHL3Q9UH77 587 aa6.86□□□□□ -1.31
VPS41-213ENST00000485955 ROBO2Q9HCK4 1378 aa6.85□□□□□ -1.31
VPS41-213ENST00000485955 H3BS24 57 aa6.85□□□□□ -1.31
VPS41-213ENST00000485955 ITGB5P18084 799 aa6.85□□□□□ -1.31
VPS41-213ENST00000485955 YARSP54577 528 aaKnown RBP6.85□□□□□ -1.31
VPS41-213ENST00000485955 IKZF1Q13422 519 aa6.85□□□□□ -1.31
VPS41-213ENST00000485955 BAHD1Q8TBE0 780 aaPredicted RBP6.85□□□□□ -1.31
VPS41-213ENST00000485955 CYB5D2Q8WUJ1 264 aa6.85□□□□□ -1.31
VPS41-213ENST00000485955 LRRC3Q9BY71 257 aa6.85□□□□□ -1.31
VPS41-213ENST00000485955 PCDHB14Q9Y5E9 798 aa6.85□□□□□ -1.31
VPS41-213ENST00000485955 WASH4PA8MWX3 477 aa6.84□□□□□ -1.31
VPS41-213ENST00000485955 LRRN2O75325 713 aa6.84□□□□□ -1.31
VPS41-213ENST00000485955 CYP7A1P22680 504 aa6.84□□□□□ -1.31
VPS41-213ENST00000485955 ETV3P41162 512 aa6.84□□□□□ -1.31
VPS41-213ENST00000485955 FANCCQ00597 558 aa6.84□□□□□ -1.31
VPS41-213ENST00000485955 ZP2Q05996 745 aa6.84□□□□□ -1.31
VPS41-213ENST00000485955 CWF19L2Q2TBE0 894 aaKnown RBP6.84□□□□□ -1.31
VPS41-213ENST00000485955 LRRN4CLQ8ND94 238 aa6.84□□□□□ -1.31
VPS41-213ENST00000485955 UBE2FQ969M7 185 aa6.84□□□□□ -1.31
VPS41-213ENST00000485955 BCL11AQ9H165 835 aa6.84□□□□□ -1.31
VPS41-213ENST00000485955 SLC22A31A6NKX4 558 aa6.83□□□□□ -1.32
VPS41-213ENST00000485955 ZNF76P36508 570 aa6.83□□□□□ -1.32
VPS41-213ENST00000485955 KIR3DL1P43629 444 aa6.83□□□□□ -1.32
VPS41-213ENST00000485955 SEZ6Q53EL9 994 aa6.83□□□□□ -1.32
VPS41-213ENST00000485955 ZNF394Q53GI3 561 aa6.83□□□□□ -1.32
VPS41-213ENST00000485955 SLC23A3Q6PIS1 610 aa6.83□□□□□ -1.32
VPS41-213ENST00000485955 EAF1Q96JC9 268 aaPredicted RBP6.83□□□□□ -1.32
VPS41-213ENST00000485955 COX4I2Q96KJ9 171 aa6.83□□□□□ -1.32
VPS41-213ENST00000485955 RC3H2Q9HBD1 1191 aaKnown RBP6.83□□□□□ -1.32
VPS41-213ENST00000485955 ZSWIM5Q9P217 1185 aa6.83□□□□□ -1.32
VPS41-213ENST00000485955 ATE1O95260 518 aa6.82□□□□□ -1.32
VPS41-213ENST00000485955 PAPLNO95428 1278 aa6.82□□□□□ -1.32
VPS41-213ENST00000485955 CLCQ05315 142 aa6.82□□□□□ -1.32
VPS41-213ENST00000485955 KIF2CQ99661 725 aa6.82□□□□□ -1.32
VPS41-213ENST00000485955 DUSP15Q9H1R2 295 aaPredicted RBP6.82□□□□□ -1.32
VPS41-213ENST00000485955 EHMT1Q9H9B1 1298 aa6.82□□□□□ -1.32
VPS41-213ENST00000485955 CARS2Q9HA77 564 aaKnown RBP6.82□□□□□ -1.32
VPS41-213ENST00000485955 PCDHGB7Q9Y5F8 929 aa6.82□□□□□ -1.32
VPS41-213ENST00000485955 PAX4O43316 350 aa6.81□□□□□ -1.32
VPS41-213ENST00000485955 RECKO95980 971 aa6.81□□□□□ -1.32
VPS41-213ENST00000485955 APOBRQ0VD83 1088 aa6.81□□□□□ -1.32
VPS41-213ENST00000485955 KRTAP1-3Q8IUG1 177 aa6.81□□□□□ -1.32
VPS41-213ENST00000485955 PIWIL2Q8TC59 973 aaKnown RBP6.81□□□□□ -1.32
VPS41-213ENST00000485955 CCDC74BQ96LY2 380 aa6.81□□□□□ -1.32
VPS41-213ENST00000485955 FMNL2Q96PY5 1086 aa6.81□□□□□ -1.32
VPS41-213ENST00000485955 NT5C1AQ9BXI3 368 aa6.81□□□□□ -1.32
VPS41-213ENST00000485955 LMCD1Q9NZU5 365 aa6.81□□□□□ -1.32
VPS41-213ENST00000485955 RNF114Q9Y508 228 aa6.81□□□□□ -1.32
VPS41-213ENST00000485955 TNNI2P48788 182 aa6.8□□□□□ -1.32
VPS41-213ENST00000485955 RACK1P63244 317 aaKnown RBP6.8□□□□□ -1.32
VPS41-213ENST00000485955 ARSHQ5FYA8 562 aa6.8□□□□□ -1.32
VPS41-213ENST00000485955 GK5Q6ZS86 529 aa6.8□□□□□ -1.32
VPS41-213ENST00000485955 THAP5Q7Z6K1 395 aa6.8□□□□□ -1.32
VPS41-213ENST00000485955 USP48Q86UV5 1035 aa6.8□□□□□ -1.32
VPS41-213ENST00000485955 KIAA0825Q8IV33 1275 aa6.8□□□□□ -1.32
VPS41-213ENST00000485955 SLITRK4Q8IW52 837 aa6.8□□□□□ -1.32
VPS41-213ENST00000485955 PHACTR4Q8IZ21 702 aa6.8□□□□□ -1.32
VPS41-213ENST00000485955 DTWD2Q8NBA8 298 aa6.8□□□□□ -1.32
VPS41-213ENST00000485955 RGS22Q8NE09 1264 aa6.8□□□□□ -1.32
VPS41-213ENST00000485955 VWCEQ96DN2 955 aa6.8□□□□□ -1.32
VPS41-213ENST00000485955 KREMEN1Q96MU8 473 aa6.8□□□□□ -1.32
VPS41-213ENST00000485955 SPON2Q9BUD6 331 aa6.8□□□□□ -1.32
VPS41-213ENST00000485955 ANTXR1Q9H6X2 564 aa6.8□□□□□ -1.32
VPS41-213ENST00000485955 CARMIL2Q6F5E8 1435 aa6.79□□□□□ -1.32
VPS41-213ENST00000485955 UNCXA6NJT0 531 aa6.79□□□□□ -1.32
VPS41-213ENST00000485955 RGS13O14921 159 aa6.79□□□□□ -1.32
VPS41-213ENST00000485955 UBOX5O94941 541 aa6.79□□□□□ -1.32
VPS41-213ENST00000485955 ESR1P03372 595 aa6.79□□□□□ -1.32
VPS41-213ENST00000485955 SRFP11831 508 aa6.79□□□□□ -1.32
VPS41-213ENST00000485955 JUNBP17275 347 aaPredicted RBP6.79□□□□□ -1.32
VPS41-213ENST00000485955 VAMP1P23763 118 aa6.79□□□□□ -1.32
VPS41-213ENST00000485955 POLR2BP30876 1174 aaKnown RBP6.79□□□□□ -1.32
VPS41-213ENST00000485955 MCM4P33991 863 aa6.79□□□□□ -1.32
VPS41-213ENST00000485955 ATG4DQ86TL0 474 aaPredicted RBP6.79□□□□□ -1.32
VPS41-213ENST00000485955 REXO1Q8N1G1 1221 aaKnown RBP6.79□□□□□ -1.32
VPS41-213ENST00000485955 RNF141Q8WVD5 230 aa6.79□□□□□ -1.32
VPS41-213ENST00000485955 NKD1Q969G9 470 aa6.79□□□□□ -1.32
VPS41-213ENST00000485955 METTL5Q9NRN9 209 aaKnown RBP6.79□□□□□ -1.32
VPS41-213ENST00000485955 KIAA1522Q9P206 1035 aaPredicted RBP6.79□□□□□ -1.32
VPS41-213ENST00000485955 OVOS1Q6IE37 1185 aa6.78□□□□□ -1.32
VPS41-213ENST00000485955 RNF34Q969K3 372 aa6.78□□□□□ -1.32
VPS41-213ENST00000485955 ATG4CQ96DT6 458 aa6.78□□□□□ -1.32
VPS41-213ENST00000485955 C19orf73Q9NVV2 129 aa6.78□□□□□ -1.32
VPS41-213ENST00000485955 GMIPQ9P107 970 aa6.78□□□□□ -1.32
VPS41-213ENST00000485955 DDX41Q9UJV9 622 aaKnown RBP6.78□□□□□ -1.32
VPS41-213ENST00000485955 RAG1P15918 1043 aa6.77□□□□□ -1.33
VPS41-213ENST00000485955 TPP2P29144 1249 aaPredicted RBP6.77□□□□□ -1.33
VPS41-213ENST00000485955 GBP1P32455 592 aa6.77□□□□□ -1.33
VPS41-213ENST00000485955 MLECQ14165 292 aa6.77□□□□□ -1.33
VPS41-213ENST00000485955 GAB4Q2WGN9 574 aa6.77□□□□□ -1.33
VPS41-213ENST00000485955 CDCP2Q5VXM1 449 aa6.77□□□□□ -1.33
VPS41-213ENST00000485955 METTL16Q86W50 562 aaKnown RBP6.77□□□□□ -1.33
VPS41-213ENST00000485955 MRRFQ96E11 262 aaKnown RBP6.77□□□□□ -1.33
VPS41-213ENST00000485955 ASIC4Q96FT7 647 aa6.77□□□□□ -1.33
VPS41-213ENST00000485955 GPR62Q9BZJ7 368 aa6.77□□□□□ -1.33
VPS41-213ENST00000485955 CNNM2Q9H8M5 875 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 115.4 ms